Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p03770 Brassica napus HOM05D004717 ORTHO05D005636 9.6e-124 446.8 221 100.0
BraA03t09724Z Brassica rapa HOM05D004717 ORTHO05D005636 3.1e-106 388.7 197 98.0
C03p04250 Brassica napus HOM05D004717 ORTHO05D005636 1.1e-103 380.2 197 95.9
BolC3t12957H Brassica oleracea HOM05D004717 ORTHO05D005636 1.1e-103 380.2 197 95.9
BcaB01g05612 Brassica carinata HOM05D004717 ORTHO05D005636 8.7e-101 370.5 197 92.9
AL6G18770 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 7.1e-95 350.9 197 85.3
AT5G08335 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 2.1e-94 349.4 197 84.3
Carub.0006s0723 Capsella rubella HOM05D004717 ORTHO05D005636 3.5e-94 348.6 196 86.2
Thhalv10014725m.g Eutrema salsugineum HOM05D004717 ORTHO05D005636 1.0e-93 347.1 197 84.8
CARHR204740 Cardamine hirsuta HOM05D004717 ORTHO05D005636 6.7e-93 344.4 197 84.3
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 8.7e-93 344.0 216 77.8
Carub.0006s2109 Capsella rubella HOM05D004717 ORTHO05D005636 4.6e-86 321.6 195 75.9
Sp6g34610 Schrenkiella parvula HOM05D004717 ORTHO05D005636 3.9e-85 318.5 178 87.1
AL6G34580 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 6.7e-85 317.8 196 76.5
AT5G23320 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 9.7e-84 313.9 196 76.0
CARHR190220 Cardamine hirsuta HOM05D004717 ORTHO05D005636 3.1e-82 308.9 196 74.5
THA.LOC104800704 Tarenaya hassleriana HOM05D004717 ORTHO05D005636 5.3e-82 308.1 195 74.4
CiPaw.05G171400 Carya illinoinensis HOM05D004717 ORTHO05D005636 1.4e-77 293.5 197 67.5
TPR.G28016 Trifolium pratense HOM05D004717 ORTHO05D005636 2.3e-77 292.7 197 67.5
CiPaw.06G062200 Carya illinoinensis HOM05D004717 ORTHO05D005636 5.1e-77 291.6 197 67.0
Haze_11783 Corylus avellana HOM05D004717 ORTHO05D005636 5.1e-77 291.6 195 68.2
Duzib132G0983 Durio zibethinus HOM05D004717 ORTHO05D005636 3.3e-76 288.9 194 68.6
Gohir.A12G132100 Gossypium hirsutum HOM05D004717 ORTHO05D005636 3.3e-76 288.9 196 67.9
Potri.007G074500 Populus trichocarpa HOM05D004717 ORTHO05D005636 3.3e-76 288.9 196 67.3
TWI74G1267 Tripterygium wilfordii HOM05D004717 ORTHO05D005636 1.3e-75 287.0 196 68.4
CSS0046676 Camellia sinensis var. sinensis HOM05D004717 ORTHO05D005636 2.8e-75 285.8 197 68.0
Manes.08G039100 Manihot esculenta HOM05D004717 ORTHO05D005636 3.7e-75 285.4 195 66.2
CiPaw.05G171500 Carya illinoinensis HOM05D004717 ORTHO05D005636 6.3e-75 284.6 197 66.0
MELO3C022525.2 Cucumis melo HOM05D004717 ORTHO05D005636 6.3e-75 284.6 196 69.4
Gorai.008G146900 Gossypium raimondii HOM05D004717 ORTHO05D005636 6.3e-75 284.6 194 67.5
Potri.005G089500 Populus trichocarpa HOM05D004717 ORTHO05D005636 6.3e-75 284.6 196 66.8
Thecc.02G155400 Theobroma cacao HOM05D004717 ORTHO05D005636 6.3e-75 284.6 194 68.0
GSVIVG01026135001 Vitis vinifera HOM05D004717 ORTHO05D005636 8.2e-75 284.3 196 66.8
Oeu003437.1 Olea europaea HOM05D004717 ORTHO05D005636 1.1e-74 283.9 196 67.3
Prupe.1G348900 Prunus persica HOM05D004717 ORTHO05D005636 1.1e-74 283.9 196 65.3
MD16G1003900 Malus domestica HOM05D004717 ORTHO05D005636 1.4e-74 283.5 196 65.3
AUR62001133 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.8e-74 283.1 194 66.0
Sed0013821 Sechium edule HOM05D004717 ORTHO05D005636 1.8e-74 283.1 196 67.3
ClCG06G000120 Citrullus lanatus HOM05D004717 ORTHO05D005636 3.1e-74 282.3 188 70.2
RcHm_v2.0_Chr4g0446911 Rosa chinensis HOM05D004717 ORTHO05D005636 3.1e-74 282.3 196 65.8
CsaV3_6G005870 Cucumis sativus L. HOM05D004717 ORTHO05D005636 6.9e-74 281.2 196 68.9
Medtr6g075160 Medicago truncatula HOM05D004717 ORTHO05D005636 6.9e-74 281.2 197 65.0
Dinv02673 Davidia involucrata HOM05D004717 ORTHO05D005636 9.1e-74 280.8 195 67.2
Sabra07G0063200 Salix brachista HOM05D004717 ORTHO05D005636 1.2e-73 280.4 195 65.6
Lsat_1_v5_gn_9_25720 Lactuca sativa HOM05D004717 ORTHO05D005636 1.5e-73 280.0 196 66.8
GSVIVG01038782001 Vitis vinifera HOM05D004717 ORTHO05D005636 2.0e-73 279.6 195 67.7
Nitab4.5_0004808g0010 Nicotiana tabacum HOM05D004717 ORTHO05D005636 2.6e-73 279.3 195 64.6
FAN12G1282 Fragaria x ananassa HOM05D004717 ORTHO05D005636 3.4e-73 278.9 196 65.3
QL04p036464 Quercus lobata HOM05D004717 ORTHO05D005636 3.4e-73 278.9 197 64.5
Oeu033041.1 Olea europaea HOM05D004717 ORTHO05D005636 4.5e-73 278.5 196 65.3
Eucgr.G02601 Eucalyptus grandis HOM05D004717 ORTHO05D005636 7.7e-73 277.7 197 65.5
Atru.chr11.1095 Acer truncatum HOM05D004717 ORTHO05D005636 1.3e-72 276.9 195 67.2
Ciclev10016775m.g Citrus clementina HOM05D004717 ORTHO05D005636 1.3e-72 276.9 196 66.3
MD13G1003500 Malus domestica HOM05D004717 ORTHO05D005636 1.7e-72 276.6 196 64.8
QL04p036080 Quercus lobata HOM05D004717 ORTHO05D005636 1.7e-72 276.6 195 64.6
TPR.G9035 Trifolium pratense HOM05D004717 ORTHO05D005636 1.7e-72 276.6 196 65.8
EL10Ac7g17906 Beta vulgaris HOM05D004717 ORTHO05D005636 2.9e-72 275.8 190 67.9
Cc11_g03470 Coffea canephora HOM05D004717 ORTHO05D005636 2.9e-72 275.8 196 65.8
Peaxi162Scf00681g00024 Petunia axillaris HOM05D004717 ORTHO05D005636 2.9e-72 275.8 195 65.1
Rhsim02G0075200 Rhododendron simsii HOM05D004717 ORTHO05D005636 2.9e-72 275.8 196 66.3
Sed0025396 Sechium edule HOM05D004717 ORTHO05D005636 3.8e-72 275.4 195 66.2
PGSC0003DMG400011510 Solanum tuberosum HOM05D004717 ORTHO05D005636 3.8e-72 275.4 196 63.8
vmacro15638 Vaccinium macrocarpon HOM05D004717 ORTHO05D005636 3.8e-72 275.4 195 66.2
HanXRQChr08g0237151 Helianthus annuus HOM05D004717 ORTHO05D005636 6.5e-72 274.6 195 67.7
Lj6P708T54 Lonicera japonica HOM05D004717 ORTHO05D005636 8.5e-72 274.2 196 65.8
Nitab4.5_0004979g0110 Nicotiana tabacum HOM05D004717 ORTHO05D005636 8.5e-72 274.2 195 63.1
Solyc04g009010.2 Solanum lycopersicum HOM05D004717 ORTHO05D005636 8.5e-72 274.2 196 63.3
PGR142G4258 Punica granatum HOM05D004717 ORTHO05D005636 1.1e-71 273.9 194 66.5
arahy.Tifrunner.gnm1.ann1.TS1LPS Arachis hypogaea HOM05D004717 ORTHO05D005636 1.9e-71 273.1 197 65.0
Glyma.16G218800 Glycine max HOM05D004717 ORTHO05D005636 1.9e-71 273.1 196 65.3
Gohir.D12G135700 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.9e-71 273.1 181 68.5
arahy.Tifrunner.gnm1.ann1.8YZR55 Arachis hypogaea HOM05D004717 ORTHO05D005636 4.2e-71 271.9 197 64.5
Migut.L01402 Erythranthe guttata HOM05D004717 ORTHO05D005636 7.2e-71 271.2 196 65.8
PGR142G2311 Punica granatum HOM05D004717 ORTHO05D005636 7.2e-71 271.2 196 64.3
Ah.01g024100 Amaranthus hybridus HOM05D004717 ORTHO05D005636 1.2e-70 270.4 196 65.3
CAN.G274.13 Capsicum annuum HOM05D004717 ORTHO05D005636 1.2e-70 270.4 195 63.6
Hma1.2p1_0513F.1_g169470 Hydrangea macrophylla HOM05D004717 ORTHO05D005636 1.2e-70 270.4 196 68.4
Psat1g123480 Pisum sativum HOM05D004717 ORTHO05D005636 1.6e-70 270.0 197 62.4
Lj5g0015714 Lotus japonicus HOM05D004717 ORTHO05D005636 2.1e-70 269.6 197 62.9
Lalb_Chr24g0398391 Lupinus albus HOM05D004717 ORTHO05D005636 2.1e-70 269.6 197 64.0
VMungo0464G0417 Vigna mungo HOM05D004717 ORTHO05D005636 3.6e-70 268.9 196 62.2
Eucgr.G02666 Eucalyptus grandis HOM05D004717 ORTHO05D005636 4.7e-70 268.5 196 63.3
Thecc.05G241200 Theobroma cacao HOM05D004717 ORTHO05D005636 7.9e-70 267.7 184 67.4
Sc17g0002110 Simmondsia chinensis HOM05D004717 ORTHO05D005636 1.4e-69 266.9 193 66.8
CANSAT11G2572 Cannabis sativa HOM05D004717 ORTHO05D005636 1.8e-69 266.5 197 63.5
Nn2g12497 Nelumbo nucifera HOM05D004717 ORTHO05D005636 1.8e-69 266.5 196 62.2
Phvul.004G144800 Phaseolus vulgaris HOM05D004717 ORTHO05D005636 1.8e-69 266.5 196 62.8
Sc08g0003750 Simmondsia chinensis HOM05D004717 ORTHO05D005636 1.8e-69 266.5 194 63.4
DCAR_027608 Daucus carota HOM05D004717 ORTHO05D005636 3.0e-69 265.8 182 65.9
Gohir.A11G227800 Gossypium hirsutum HOM05D004717 ORTHO05D005636 3.0e-69 265.8 184 65.2
Lj2g0014996 Lotus japonicus HOM05D004717 ORTHO05D005636 3.0e-69 265.8 197 61.4
MSTRG.7889 Avicennia marina HOM05D004717 ORTHO05D005636 3.9e-69 265.4 196 62.2
Lj3g0022258 Lotus japonicus HOM05D004717 ORTHO05D005636 5.2e-69 265.0 197 61.9
EL10Ac9g21225 Beta vulgaris HOM05D004717 ORTHO05D005636 1.1e-68 263.8 196 63.8
Ah.08g214600 Amaranthus hybridus HOM05D004717 ORTHO05D005636 2.0e-68 263.1 192 66.7
Gohir.D11G240300 Gossypium hirsutum HOM05D004717 ORTHO05D005636 2.0e-68 263.1 184 64.7
Gorai.007G253700 Gossypium raimondii HOM05D004717 ORTHO05D005636 2.0e-68 263.1 184 64.7
AUR62012906 Chenopodium quinoa HOM05D004717 ORTHO05D005636 2.6e-68 262.7 196 64.3
Duzib106G0072 Durio zibethinus HOM05D004717 ORTHO05D005636 2.6e-68 262.7 184 66.3
ECA247G4036 Erigeron canadensis HOM05D004717 ORTHO05D005636 7.4e-68 261.2 196 62.8
PSO782G0831 Papaver somniferum HOM05D004717 ORTHO05D005636 9.7e-68 260.8 197 62.4
Lsat_1_v5_gn_5_170960 Lactuca sativa HOM05D004717 ORTHO05D005636 1.3e-67 260.4 196 61.2
Lj6P714T12 Lonicera japonica HOM05D004717 ORTHO05D005636 2.2e-67 259.6 181 65.7
Duzib177G0848 Durio zibethinus HOM05D004717 ORTHO05D005636 4.8e-67 258.5 184 65.2
SGA_v2.0_scaffold62G21625 Striga asiatica HOM05D004717 ORTHO05D005636 1.1e-66 257.3 196 61.7
CDE02G0493 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 1.4e-66 256.9 196 61.2
GSVIVG01038778001 Vitis vinifera HOM05D004717 ORTHO05D005636 4.1e-66 255.4 196 60.2
SGA_v2.0_scaffold8G04231 Striga asiatica HOM05D004717 ORTHO05D005636 7.0e-66 254.6 196 60.7
Lalb_Chr16g0386851 Lupinus albus HOM05D004717 ORTHO05D005636 1.2e-65 253.8 197 61.4
Migut.E00157 Erythranthe guttata HOM05D004717 ORTHO05D005636 2.9e-64 249.2 197 61.4
MBI14_g08135_MAGBIO Magnolia biondii HOM05D004717 ORTHO05D005636 3.8e-64 248.8 196 60.2
Aqoxy6G00094 Aquilegia oxysepala HOM05D004717 ORTHO05D005636 8.5e-64 247.7 195 59.0
unitig_8.g3169 Utricularia gibba HOM05D004717 ORTHO05D005636 1.5e-63 246.9 196 58.7
HanXRQChr01g0011051 Helianthus annuus HOM05D004717 ORTHO05D005636 2.5e-63 246.1 196 59.7
Aa31LG11G2780 Aethionema arabicum HOM05D004717 ORTHO05D005636 4.2e-63 245.4 142 78.2
SHI07248 Sapria himalayana HOM05D004717 ORTHO05D005636 5.5e-63 245.0 196 60.7
HPP92_018371 Vanilla planifolia HOM05D004717 ORTHO05D005636 2.7e-62 242.7 186 58.6
Lj3P847T27 Lonicera japonica HOM05D004717 ORTHO05D005636 1.0e-61 240.7 180 61.7
PSO170G2864 Papaver somniferum HOM05D004717 ORTHO05D005636 1.8e-58 229.9 170 64.1
Cpa.g.sc59.26 Carica papaya HOM05D004717 ORTHO05D005636 7.7e-57 224.6 194 56.7
Actinidia35903 Actinidia chinensis HOM05D004717 ORTHO05D005636 1.0e-56 224.2 181 59.1
DCAR_023472 Daucus carota HOM05D004717 ORTHO05D005636 4.2e-55 218.8 143 68.5
CDE04G3142 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 3.0e-53 212.6 169 59.8
Pp3c3_35430 Physcomitrium patens HOM05D004717 ORTHO05D005636 2.0e-52 209.9 189 53.4
AUR62011721 Chenopodium quinoa HOM05D004717 ORTHO05D005636 7.5e-52 208.0 142 66.2
HanXRQChr17g0556721 Helianthus annuus HOM05D004717 ORTHO05D005636 7.5e-52 208.0 155 65.8
Zm00001eb144100 Zea mays HOM05D004717 ORTHO05D005636 5.9e-49 198.4 159 55.3
ATR0580G192 Amborella trichopoda HOM05D004717 ORTHO05D005636 4.2e-47 192.2 142 57.0
SMO117G0139 Selaginella moellendorffii HOM05D004717 ORTHO05D005636 4.2e-47 192.2 185 47.6
Rhsim02G0074800 Rhododendron simsii HOM05D004717 ORTHO05D005636 3.0e-45 186.0 195 50.8
Mapoly0062s0094 Marchantia polymorpha HOM05D004717 ORTHO05D005636 2.2e-43 179.9 196 44.9
Sopen04g004190 Solanum pennellii HOM05D004717 ORTHO05D005636 2.7e-41 172.9 112 66.1
TAR381G0283 Trochodendron aralioides HOM05D004717 ORTHO05D005636 4.3e-39 165.6 125 64.0
COL.COLO4_20086 Corchorus olitorius HOM05D004717 ORTHO05D005636 3.0e-37 159.5 96 71.9
Glyma.09G169200 Glycine max HOM05D004717 ORTHO05D005636 2.0e-36 156.8 196 44.9
MCO05G386 Micromonas commoda HOM05D004717 ORTHO05D005636 7.5e-36 154.8 183 47.0
SalBow2G2042 Salvia bowleyana HOM05D004717 ORTHO05D005636 1.1e-34 151.0 196 42.9
Haze_27496 Corylus avellana HOM05D004717 ORTHO05D005636 5.0e-32 142.1 184 42.4
PRCOL_00002165 Prasinoderma coloniale HOM05D004717 ORTHO05D005636 6.6e-32 141.7 181 45.3
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 2.4e-26 123.2 194 42.3
Cfa021666 Carpinus fangiana HOM05D004717 ORTHO05D005636 5.0e-24 115.5 186 34.4
Hund05579 Selenicereus undatus HOM05D004717 ORTHO05D005636 4.3e-23 112.5 118 44.9
Ca_23673_v3 Cicer arietinum L. HOM05D004717 ORTHO05D005636 7.3e-23 111.7 134 46.3
SEGI_39005 Sequoiadendron giganteum HOM05D004717 ORTHO05D005636 2.8e-22 109.8 81 56.8
ECA247G3377 Erigeron canadensis HOM05D004717 ORTHO05D005636 2.0e-20 103.6 83 59.0
AagrBONN_evm.TU.Sc2ySwM_344.2327 Anthoceros agrestis HOM05D004717 ORTHO05D005636 3.2e-18 96.3 107 45.8
Os04g0602900 Oryza sativa ssp. japonica HOM05D004717 ORTHO05D005636 5.4e-18 95.5 71 57.7
AagrBONN_evm.TU.Sc2ySwM_117.4144 Anthoceros agrestis HOM05D004717 ORTHO05D005636 1.0e-16 91.3 123 43.1
Eucgr.D01405 Eucalyptus grandis HOM05D004717 ORTHO05D005636 8.6e-16 88.2 64 54.7
RhsimUnG0160700 Rhododendron simsii HOM05D004717 ORTHO05D005636 6.4e-11 72.0 56 62.5
A03p68120 Brassica napus HOM05D004375 ORTHO05D008558 3.5e-09 66.2 38 84.2
A01p02140 Brassica napus HOM05D040038 ORTHO05D033345 2.5e-07 60.1 40 77.5
BolC1t00223H Brassica oleracea HOM05D040038 ORTHO05D033345 3.3e-07 59.7 41 75.6
BraA01t00203Z Brassica rapa HOM05D040038 ORTHO05D033345 2.8e-06 56.6 40 75.0
Cre03.g145427 Chlamydomonas reinhardtii HOM05D037009 ORTHO05D034383 2.8e-06 56.6 141 28.4
BolC9t59603H Brassica oleracea HOM05D004717 ORTHO05D005636 4.7e-06 55.8 87 41.4


User provided reference genes

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