Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p03010 Brassica napus HOM05D002529 ORTHO05D002664 8.7e-78 293.5 143 100.0
BraA07t31059Z Brassica rapa HOM05D002529 ORTHO05D002664 1.0e-49 200.3 100 99.0
BraA08t33207Z Brassica rapa HOM05D002529 ORTHO05D002664 1.0e-49 200.3 100 99.0
A09p05120 Brassica napus HOM05D002529 ORTHO05D002664 2.9e-49 198.7 100 98.0
BraA09t36151Z Brassica rapa HOM05D002529 ORTHO05D002664 2.9e-49 198.7 100 98.0
C09p05530 Brassica napus HOM05D002529 ORTHO05D002664 2.5e-48 195.7 100 96.0
BolC9t53482H Brassica oleracea HOM05D002529 ORTHO05D002664 2.5e-48 195.7 100 96.0
A07p20840 Brassica napus HOM05D002529 ORTHO05D002664 5.5e-48 194.5 100 96.0
BraA06t25802Z Brassica rapa HOM05D002529 ORTHO05D002664 5.5e-48 194.5 100 96.0
BcaB04g19649 Brassica carinata HOM05D002529 ORTHO05D002664 1.6e-47 193.0 100 94.0
BcaC04g23706 Brassica carinata HOM05D002529 ORTHO05D002664 2.7e-47 192.2 100 94.0
BcaC04g23704 Brassica carinata HOM05D002529 ORTHO05D002664 1.8e-46 189.5 100 95.0
BraA06t24789Z Brassica rapa HOM05D002529 ORTHO05D002664 4.4e-45 184.9 114 84.2
Sp2g20320 Schrenkiella parvula HOM05D002529 ORTHO05D002664 2.7e-42 175.6 98 87.8
Thhalv10004943m.g Eutrema salsugineum HOM05D002529 ORTHO05D002664 3.8e-41 171.8 100 85.0
BcaNung04257 Brassica carinata HOM05D002529 ORTHO05D002664 1.5e-40 169.9 102 81.4
BraA06t26698Z Brassica rapa HOM05D002529 ORTHO05D002664 2.5e-40 169.1 102 80.4
A06p37790 Brassica napus HOM05D002529 ORTHO05D002664 1.2e-39 166.8 102 80.4
Aa31LG11G8810 Aethionema arabicum HOM05D002529 ORTHO05D002664 2.7e-34 149.1 100 76.0
CARHR185680 Cardamine hirsuta HOM05D002529 ORTHO05D002664 2.3e-30 136.0 105 66.7
THA.LOC104821691 Tarenaya hassleriana HOM05D002529 ORTHO05D002664 1.2e-29 133.7 100 71.0
AT5G27990 Arabidopsis thaliana HOM05D002529 ORTHO05D002664 5.4e-27 124.8 100 58.0
Carub.0006s2547 Capsella rubella HOM05D002529 ORTHO05D002664 7.0e-27 124.4 100 62.0
AL6G40160 Arabidopsis lyrata HOM05D002529 ORTHO05D002664 6.6e-25 117.9 97 56.7
Cpa.g.sc114.63 Carica papaya HOM05D002529 ORTHO05D002664 5.8e-21 104.8 104 51.9
Duzib128G1976 Durio zibethinus HOM05D002529 ORTHO05D002664 1.2e-18 97.1 95 50.5
Gohir.D11G313300 Gossypium hirsutum HOM05D002529 ORTHO05D002664 8.6e-17 90.9 95 48.4
Gorai.007G344500 Gossypium raimondii HOM05D002529 ORTHO05D002664 8.6e-17 90.9 95 48.4
Thecc.05G290400 Theobroma cacao HOM05D002529 ORTHO05D002664 2.5e-16 89.4 96 50.0
Potri.005G047901 Populus trichocarpa HOM05D002529 ORTHO05D002664 5.6e-16 88.2 95 45.3
CiPaw.08G178400 Carya illinoinensis HOM05D002529 ORTHO05D002664 7.3e-16 87.8 93 45.2
Gohir.A11G298500 Gossypium hirsutum HOM05D002529 ORTHO05D002664 7.3e-16 87.8 95 47.4
Lj4g0005583 Lotus japonicus HOM05D002529 ORTHO05D002664 2.1e-15 86.3 104 42.3
QL08p059718 Quercus lobata HOM05D002529 ORTHO05D002664 2.1e-15 86.3 95 46.3
Sabra13G0034100 Salix brachista HOM05D004408 ORTHO05D005486 2.1e-15 86.3 95 43.2
Potri.013G035000 Populus trichocarpa HOM05D002529 ORTHO05D002664 4.7e-15 85.1 87 44.8
CiPaw.07G007900 Carya illinoinensis HOM05D002529 ORTHO05D002664 6.2e-15 84.7 102 41.2
Manes.08G120700 Manihot esculenta HOM05D002529 ORTHO05D002664 6.2e-15 84.7 95 43.2
VMungo1383G2706 Vigna mungo HOM05D002529 ORTHO05D002664 6.2e-15 84.7 86 47.7
VMungo0251G2818 Vigna mungo HOM05D002529 ORTHO05D002664 1.1e-14 84.0 101 40.6
Ca_23953_v3 Cicer arietinum L. HOM05D002529 ORTHO05D002664 3.1e-14 82.4 103 42.7
Ca_23959_v3 Cicer arietinum L. HOM05D002529 ORTHO05D002664 3.1e-14 82.4 103 42.7
Glyma.13G169100 Glycine max HOM05D002529 ORTHO05D002664 3.1e-14 82.4 103 41.7
Lj1g0004297 Lotus japonicus HOM05D002529 ORTHO05D002664 3.1e-14 82.4 96 40.6
Phvul.003G288900 Phaseolus vulgaris HOM05D002529 ORTHO05D002664 3.1e-14 82.4 95 43.2
Psat2g156040 Pisum sativum HOM05D002529 ORTHO05D002664 3.1e-14 82.4 89 43.8
Medtr8g043450 Medicago truncatula HOM05D002529 ORTHO05D002664 5.2e-14 81.6 94 45.7
GSVIVG01021882001 Vitis vinifera HOM05D002529 ORTHO05D002664 6.8e-14 81.3 99 38.4
Ciclev10002511m.g Citrus clementina HOM05D002529 ORTHO05D002664 8.9e-14 80.9 95 42.1
TWI12G0397 Tripterygium wilfordii HOM05D002529 ORTHO05D002664 8.9e-14 80.9 87 44.8
TWI12G0415 Tripterygium wilfordii HOM05D000460 ORTHO05D000333 8.9e-14 80.9 87 44.8
ClCG05G009860 Citrullus lanatus HOM05D002529 ORTHO05D002664 1.2e-13 80.5 89 46.1
Eucgr.H04397 Eucalyptus grandis HOM05D002529 ORTHO05D002664 2.0e-13 79.7 87 44.8
Glyma.18G147100 Glycine max HOM05D002529 ORTHO05D002664 2.0e-13 79.7 95 41.1
Glyma.19G009300 Glycine max HOM05D002529 ORTHO05D002664 2.0e-13 79.7 86 45.3
Prupe.6G025700 Prunus persica HOM05D002529 ORTHO05D002664 2.0e-13 79.7 87 42.5
Rhsim05G0150200 Rhododendron simsii HOM05D002529 ORTHO05D002664 2.0e-13 79.7 87 44.8
Aqoxy2G03402 Aquilegia oxysepala HOM05D002529 ORTHO05D002664 2.6e-13 79.3 94 42.6
Lsat_1_v5_gn_2_115920 Lactuca sativa HOM05D002529 ORTHO05D002664 2.6e-13 79.3 100 38.0
Nn1g02343 Nelumbo nucifera HOM05D002529 ORTHO05D002664 2.6e-13 79.3 100 41.0
Prupe.6G337800 Prunus persica HOM05D002529 ORTHO05D002664 2.6e-13 79.3 87 44.8
MD03G1029600 Malus domestica HOM05D002529 ORTHO05D002664 3.4e-13 79.0 95 40.0
ClCG11G014280 Citrullus lanatus HOM05D002529 ORTHO05D002664 4.4e-13 78.6 89 43.8
RcHm_v2.0_Chr5g0076411 Rosa chinensis HOM05D002529 ORTHO05D002664 4.4e-13 78.6 92 40.2
arahy.Tifrunner.gnm1.ann1.2T97DK Arachis hypogaea HOM05D002529 ORTHO05D002664 5.8e-13 78.2 85 43.5
arahy.Tifrunner.gnm1.ann1.A0H8UL Arachis hypogaea HOM05D002529 ORTHO05D002664 5.8e-13 78.2 85 43.5
arahy.Tifrunner.gnm1.ann1.DGU1VQ Arachis hypogaea HOM05D002529 ORTHO05D002664 5.8e-13 78.2 85 43.5
arahy.Tifrunner.gnm1.ann1.EKEG73 Arachis hypogaea HOM05D002529 ORTHO05D002664 5.8e-13 78.2 85 43.5
COL.COLO4_15255 Corchorus olitorius HOM05D002529 ORTHO05D002664 7.5e-13 77.8 95 46.3
Hma1.2p1_0083F.1_g042670 Hydrangea macrophylla HOM05D002529 ORTHO05D002664 7.5e-13 77.8 87 44.8
TAR636G3415 Trochodendron aralioides HOM05D002529 ORTHO05D002664 7.5e-13 77.8 100 41.0
vmacro19828 Vaccinium macrocarpon HOM05D002529 ORTHO05D002664 7.5e-13 77.8 87 42.5
FvH4_5g30310 Fragaria vesca HOM05D002529 ORTHO05D002664 9.9e-13 77.4 99 38.4
MD04G1217800 Malus domestica HOM05D002529 ORTHO05D002664 9.9e-13 77.4 87 43.7
Atru.chr2.663 Acer truncatum HOM05D002529 ORTHO05D002664 1.3e-12 77.0 95 38.9
Lalb_Chr04g0264001 Lupinus albus HOM05D002529 ORTHO05D002664 1.3e-12 77.0 94 40.4
Sed0025735 Sechium edule HOM05D002529 ORTHO05D002664 1.7e-12 76.6 89 41.6
arahy.Tifrunner.gnm1.ann1.2EE7P6 Arachis hypogaea HOM05D002529 ORTHO05D002664 2.2e-12 76.3 85 41.2
arahy.Tifrunner.gnm1.ann1.418MG4 Arachis hypogaea HOM05D002529 ORTHO05D002664 2.2e-12 76.3 85 41.2
arahy.Tifrunner.gnm1.ann1.G3F6T9 Arachis hypogaea HOM05D002529 ORTHO05D002664 2.2e-12 76.3 85 41.2
CANSAT54G0996 Cannabis sativa HOM05D002529 ORTHO05D002664 2.2e-12 76.3 95 42.1
RcHm_v2.0_Chr1g0334081 Rosa chinensis HOM05D002529 ORTHO05D002664 2.2e-12 76.3 92 38.0
Dinv05119 Davidia involucrata HOM05D002529 ORTHO05D002664 2.9e-12 75.9 89 40.4
Lsat_1_v5_gn_1_56180 Lactuca sativa HOM05D002529 ORTHO05D002664 3.7e-12 75.5 95 37.9
Dinv02599 Davidia involucrata HOM05D002529 ORTHO05D002664 6.4e-12 74.7 87 40.2
FAN08G0687 Fragaria x ananassa HOM05D002529 ORTHO05D002664 6.4e-12 74.7 92 38.0
CSS0013639 Camellia sinensis var. sinensis HOM05D002529 ORTHO05D002664 1.1e-11 73.9 90 37.8
HanXRQChr07g0200741 Helianthus annuus HOM05D002529 ORTHO05D002664 1.1e-11 73.9 87 41.4
HanXRQChr14g0457681 Helianthus annuus HOM05D002529 ORTHO05D002664 1.1e-11 73.9 101 39.6
Nn5g28120 Nelumbo nucifera HOM05D002529 ORTHO05D002664 1.1e-11 73.9 100 39.0
Hund06996 Selenicereus undatus HOM05D002529 ORTHO05D002664 1.1e-11 73.9 89 41.6
MELO3C003557.2 Cucumis melo HOM05D002529 ORTHO05D002664 1.4e-11 73.6 87 41.4
ECA236G0123 Erigeron canadensis HOM05D002529 ORTHO05D002664 1.4e-11 73.6 97 34.0
FAN13G2107 Fragaria x ananassa HOM05D002529 ORTHO05D002664 1.4e-11 73.6 92 38.0
Aqoxy1G03767 Aquilegia oxysepala HOM05D002529 ORTHO05D002664 2.4e-11 72.8 96 42.7
CsaV3_3G047670 Cucumis sativus L. HOM05D002529 ORTHO05D002664 3.2e-11 72.4 87 40.2
ECA238G0509 Erigeron canadensis HOM05D002529 ORTHO05D002664 3.2e-11 72.4 87 37.9
Dinv02597 Davidia involucrata HOM05D002529 ORTHO05D002664 4.1e-11 72.0 85 40.0
Zm00001eb218130 Zea mays HOM05D002529 ORTHO05D002664 7.1e-11 71.2 88 40.9
Migut.L01786 Erythranthe guttata HOM05D002529 ORTHO05D002664 1.2e-10 70.5 90 38.9
Os08g0508600 Oryza sativa ssp. japonica HOM05D002529 ORTHO05D002664 1.2e-10 70.5 96 38.5
PSO210G6081 Papaver somniferum HOM05D002529 ORTHO05D002664 1.2e-10 70.5 97 34.0
PSO832G3905 Papaver somniferum HOM05D002529 ORTHO05D002664 1.2e-10 70.5 97 34.0
FAN18G2811 Fragaria x ananassa HOM05D002529 ORTHO05D002664 2.1e-10 69.7 121 32.2
AUR62005008 Chenopodium quinoa HOM05D002529 ORTHO05D002664 3.5e-10 68.9 99 39.4
PSO761G0286 Papaver somniferum HOM05D002529 ORTHO05D002664 3.5e-10 68.9 92 41.3
AUR62000960 Chenopodium quinoa HOM05D002529 ORTHO05D002664 4.6e-10 68.6 99 41.4
Nn6g34079 Nelumbo nucifera HOM05D002529 ORTHO05D002664 4.6e-10 68.6 88 36.4
PGSC0003DMG400027508 Solanum tuberosum HOM05D002529 ORTHO05D002664 4.6e-10 68.6 90 37.8
Aqoxy3G00616 Aquilegia oxysepala HOM05D002529 ORTHO05D002664 6.0e-10 68.2 96 40.6
C07p40440 Brassica napus HOM05D002529 ORTHO05D002664 6.0e-10 68.2 49 69.4
Nitab4.5_0003586g0050 Nicotiana tabacum HOM05D002529 ORTHO05D002664 7.8e-10 67.8 90 36.7
Solyc01g096760.3 Solanum lycopersicum HOM05D002529 ORTHO05D002664 1.0e-09 67.4 90 36.7
Sopen01g040470 Solanum pennellii HOM05D002529 ORTHO05D002664 1.0e-09 67.4 90 36.7
TWI09G0630 Tripterygium wilfordii HOM05D002529 ORTHO05D002664 1.3e-09 67.0 80 42.5
CDE08G0620 Ceratophyllum demersum HOM05D007486 ORTHO05D003673 1.7e-09 66.6 94 35.1
SalBow3G3572 Salvia bowleyana HOM05D002529 ORTHO05D002664 1.7e-09 66.6 89 37.1
Duzib177G0239 Durio zibethinus HOM05D000460 ORTHO05D000333 2.3e-09 66.2 98 37.8
CBR_g54098 Chara braunii HOM05D003427 ORTHO05D003927 3.0e-09 65.9 96 36.5
PSO210G7021 Papaver somniferum HOM05D002529 ORTHO05D002664 3.0e-09 65.9 97 40.2
DCAR_018312 Daucus carota HOM05D002529 ORTHO05D002664 3.9e-09 65.5 89 37.1
AUR62036909 Chenopodium quinoa HOM05D002529 ORTHO05D002664 5.1e-09 65.1 89 40.4
AUR62039687 Chenopodium quinoa HOM05D002529 ORTHO05D002664 5.1e-09 65.1 89 40.4
Sed0014372 Sechium edule HOM05D002529 ORTHO05D002664 5.1e-09 65.1 85 38.8
SMO351G0221 Selaginella moellendorffii HOM05D002529 ORTHO05D002664 5.1e-09 65.1 103 35.9
MSTRG.5850 Avicennia marina HOM05D002529 ORTHO05D002664 6.6e-09 64.7 85 37.6
CAN.G134.40 Capsicum annuum HOM05D002529 ORTHO05D002664 6.6e-09 64.7 90 35.6
SGA_v2.0_scaffold31G12908 Striga asiatica HOM05D002529 ORTHO05D002664 6.6e-09 64.7 91 36.3
CDE08G1586 Ceratophyllum demersum HOM05D002529 ORTHO05D002664 8.6e-09 64.3 94 34.0
Pp3c3_31460 Physcomitrium patens HOM05D002529 ORTHO05D002664 1.1e-08 63.9 106 35.8
ATR0697G145 Amborella trichopoda HOM05D002529 ORTHO05D002664 1.5e-08 63.5 100 37.0
Oeu006310.1 Olea europaea HOM05D002529 ORTHO05D002664 1.5e-08 63.5 95 33.7
Oeu021565.1 Olea europaea HOM05D002529 ORTHO05D002664 1.9e-08 63.2 95 31.6
Sed0006923 Sechium edule HOM05D002529 ORTHO05D002664 2.5e-08 62.8 88 40.9
ATR0730G133 Amborella trichopoda HOM05D002529 ORTHO05D002664 3.3e-08 62.4 96 37.5
Mapoly0005s0148 Marchantia polymorpha HOM05D002529 ORTHO05D002664 3.3e-08 62.4 96 33.3
TPR.G33676 Trifolium pratense HOM05D002529 ORTHO05D002664 3.3e-08 62.4 88 37.5
Cfa007075 Carpinus fangiana HOM05D001516 ORTHO05D001357 4.3e-08 62.0 98 35.7
PGR042G2960 Punica granatum HOM05D002529 ORTHO05D002664 4.3e-08 62.0 85 41.2
Migut.G00316 Erythranthe guttata HOM05D002529 ORTHO05D002664 5.6e-08 61.6 89 34.8
Peaxi162Scf00220g00009 Petunia axillaris HOM05D002529 ORTHO05D002664 5.6e-08 61.6 90 35.6
Psat4g143200 Pisum sativum HOM05D002529 ORTHO05D002664 7.3e-08 61.2 90 37.8
arahy.Tifrunner.gnm1.ann1.C65CX3 Arachis hypogaea HOM05D002529 ORTHO05D002664 1.2e-07 60.5 85 36.5
MELO3C031694.2 Cucumis melo HOM05D002529 ORTHO05D002664 1.2e-07 60.5 105 35.2
Medtr1g035200 Medicago truncatula HOM05D002529 ORTHO05D002664 1.2e-07 60.5 102 34.3
CDE02G1669 Ceratophyllum demersum HOM05D001659 ORTHO05D001659 2.1e-07 59.7 91 33.0
Atru.chr4.2452 Acer truncatum HOM05D002529 ORTHO05D002664 3.6e-07 58.9 82 39.0
BolC7t44579H Brassica oleracea HOM05D002529 ORTHO05D002664 3.6e-07 58.9 47 61.7
Cc06_g23700 Coffea canephora HOM05D002529 ORTHO05D002664 3.6e-07 58.9 95 30.5
unitig_578.g16363 Utricularia gibba HOM05D000550 ORTHO05D000400 3.6e-07 58.9 97 29.9
GSVIVG01017990001 Vitis vinifera HOM05D002529 ORTHO05D002664 4.7e-07 58.5 81 37.0
Duzib212G0919 Durio zibethinus HOM05D002529 ORTHO05D002664 6.2e-07 58.2 81 39.5
ECA236G2527 Erigeron canadensis HOM05D002529 ORTHO05D002664 6.2e-07 58.2 118 31.4
TPR.G20395 Trifolium pratense HOM05D002529 ORTHO05D002664 6.2e-07 58.2 62 43.5
Peaxi162Scf00220g00008 Petunia axillaris HOM05D002529 ORTHO05D002664 8.1e-07 57.8 90 33.3
ClCG05G005150 Citrullus lanatus HOM05D002529 ORTHO05D002664 1.1e-06 57.4 83 39.8
Migut.J01026 Erythranthe guttata HOM05D002529 ORTHO05D002664 1.1e-06 57.4 88 34.1
Sabra05G0043300 Salix brachista HOM05D002529 ORTHO05D002664 1.1e-06 57.4 64 42.2
EL10Ac3g07204 Beta vulgaris HOM05D002529 ORTHO05D002664 1.8e-06 56.6 89 36.0
TPR.G7728 Trifolium pratense HOM05D002529 ORTHO05D002664 1.8e-06 56.6 62 40.3
Gohir.A09G056400 Gossypium hirsutum HOM05D002529 ORTHO05D002664 2.4e-06 56.2 89 39.3
Ah.02g122140 Amaranthus hybridus HOM05D002529 ORTHO05D002664 3.1e-06 55.8 105 33.3
MD11G1033000 Malus domestica HOM05D002529 ORTHO05D002664 3.1e-06 55.8 100 33.0
Sc09g0003730 Simmondsia chinensis HOM05D002529 ORTHO05D002664 3.1e-06 55.8 100 34.0
CDE02G3900 Ceratophyllum demersum HOM05D002529 ORTHO05D002664 4.0e-06 55.5 92 37.0
Cc03_g03880 Coffea canephora HOM05D002529 ORTHO05D002664 4.0e-06 55.5 85 36.5
Gohir.D09G055800 Gossypium hirsutum HOM05D002529 ORTHO05D002664 4.0e-06 55.5 81 39.5
Gorai.006G068900 Gossypium raimondii HOM05D002529 ORTHO05D002664 5.2e-06 55.1 81 39.5
Manes.15G029600 Manihot esculenta HOM05D002529 ORTHO05D002664 5.2e-06 55.1 82 37.8
Nitab4.5_0004903g0030 Nicotiana tabacum HOM05D002529 ORTHO05D002664 5.2e-06 55.1 90 34.4
RcHm_v2.0_Chr4g0416031 Rosa chinensis HOM05D002529 ORTHO05D002664 5.2e-06 55.1 81 38.3
Thecc.04G233300 Theobroma cacao HOM05D002529 ORTHO05D002664 5.2e-06 55.1 81 37.0
Dinv14000 Davidia involucrata HOM05D002529 ORTHO05D002664 8.9e-06 54.3 80 38.8
MD12G1235200 Malus domestica HOM05D002529 ORTHO05D002664 8.9e-06 54.3 64 42.2
MD16G1195200 Malus domestica HOM05D002529 ORTHO05D002664 8.9e-06 54.3 80 40.0


User provided reference genes

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