Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 2.5e-174 615.5 353 100.0
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 2.5e-174 615.5 353 100.0
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 4.5e-168 594.7 353 96.3
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 3.6e-165 585.1 353 94.6
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 2.6e-163 578.9 356 93.0
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 3.0e-156 555.4 357 84.6
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 5.9e-152 541.2 357 83.2
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 1.3e-146 523.5 355 87.6
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 4.9e-146 521.5 351 82.1
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 4.7e-141 505.0 376 75.3
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 1.2e-139 500.4 346 85.3
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 1.2e-139 500.4 346 85.3
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 1.3e-138 496.9 344 85.5
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 1.1e-137 493.8 343 84.8
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 3.5e-136 488.8 352 77.6
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 1.1e-134 483.8 390 74.4
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 3.6e-133 478.8 368 73.4
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 1.7e-127 459.9 353 73.1
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 3.4e-115 419.1 353 69.1
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 1.1e-94 350.9 352 60.2
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 2.5e-94 349.7 352 60.5
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 5.7e-94 348.6 356 60.1
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 9.6e-94 347.8 351 59.5
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 9.6e-94 347.8 351 59.5
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 4.1e-92 342.4 350 58.9
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 2.5e-89 333.2 352 57.7
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 8.7e-87 324.7 351 55.8
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 7.4e-86 321.6 354 56.2
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 2.2e-85 320.1 333 60.1
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 2.2e-85 320.1 349 55.6
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 6.3e-85 318.5 328 60.1
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 8.2e-85 318.2 354 55.6
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 1.1e-84 317.8 350 57.4
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 5.3e-84 315.5 330 57.0
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 2.0e-83 313.5 354 55.9
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 5.9e-83 312.0 327 57.8
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 6.5e-82 308.5 346 56.1
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 1.4e-81 307.4 354 54.0
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 4.2e-81 305.8 357 53.8
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 5.5e-81 305.4 354 52.8
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 1.6e-80 303.9 352 53.4
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 1.6e-80 303.9 352 53.4
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 1.0e-79 301.2 330 56.7
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 1.4e-79 300.8 351 54.1
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 9.7e-78 294.7 360 51.7
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 4.8e-77 292.4 350 53.4
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 1.4e-76 290.8 331 54.1
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 1.8e-76 290.4 336 52.4
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 3.1e-76 289.7 358 53.6
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 6.9e-76 288.5 358 53.6
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 1.2e-75 287.7 330 53.9
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.0e-75 287.0 358 53.6
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 2.6e-75 286.6 354 52.3
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 1.3e-74 284.3 321 54.2
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 1.7e-74 283.9 330 52.1
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 5.0e-74 282.3 372 50.8
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 5.0e-74 282.3 356 52.8
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 8.5e-74 281.6 365 52.1
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 1.1e-73 281.2 358 52.5
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.1e-73 281.2 358 52.5
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 1.4e-73 280.8 351 52.7
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 2.5e-73 280.0 355 51.0
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 4.2e-73 279.3 354 51.4
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 4.2e-73 279.3 354 51.4
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 1.2e-72 277.7 348 50.6
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 3.6e-72 276.2 361 48.8
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 4.7e-72 275.8 333 54.1
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 1.8e-71 273.9 330 52.4
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 2.3e-71 273.5 359 49.0
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 3.9e-71 272.7 352 50.3
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 1.5e-70 270.8 355 49.6
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 1.5e-70 270.8 331 51.4
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 2.6e-70 270.0 350 50.3
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 9.7e-70 268.1 356 50.0
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 3.7e-69 266.2 351 49.9
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 3.1e-68 263.1 355 49.0
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 5.3e-68 262.3 318 50.3
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 2.6e-67 260.0 342 50.9
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 4.5e-67 259.2 356 49.2
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 7.7e-67 258.5 351 46.4
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 1.3e-66 257.7 362 48.9
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 6.5e-66 255.4 311 53.1
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 8.5e-66 255.0 347 49.3
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 1.1e-65 254.6 328 50.3
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 1.5e-65 254.2 362 49.4
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 3.2e-65 253.1 320 52.2
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 3.2e-65 253.1 349 47.0
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 7.2e-65 251.9 374 43.9
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 6.1e-64 248.8 370 46.5
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 1.5e-62 244.2 355 45.9
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 4.4e-62 242.7 356 47.2
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 1.3e-61 241.1 356 47.2
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 3.7e-61 239.6 301 48.8
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 3.5e-59 233.0 351 45.6
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 4.5e-59 232.6 340 45.0
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 1.3e-58 231.1 332 49.1
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 1.3e-58 231.1 273 52.7
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 1.7e-58 230.7 367 44.7
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 3.2e-57 226.5 362 44.8
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 1.6e-56 224.2 334 49.4
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 2.7e-56 223.4 352 45.5
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 3.6e-56 223.0 325 43.7
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 1.2e-54 218.0 330 49.7
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 3.4e-54 216.5 361 44.0
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 3.4e-54 216.5 324 42.9
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 7.5e-54 215.3 343 42.9
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 9.8e-54 214.9 325 42.8
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 9.8e-54 214.9 327 44.0
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.1e-52 211.5 338 43.2
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 3.1e-52 209.9 339 44.0
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 1.1e-49 201.4 338 42.0
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 8.0e-48 195.3 327 41.9
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 8.0e-48 195.3 327 41.9
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 2.0e-46 190.7 357 40.6
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 2.6e-46 190.3 300 45.3
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 9.8e-46 188.3 362 45.0
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 1.7e-45 187.6 361 37.7
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 6.3e-45 185.7 176 61.9
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 5.9e-43 179.1 341 41.6
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 6.1e-40 169.1 350 44.6
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 5.2e-39 166.0 344 39.0
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 5.2e-39 166.0 334 39.8
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 8.9e-39 165.2 130 72.3
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 2.0e-38 164.1 309 39.5
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 1.1e-36 158.3 227 47.6
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 1.7e-34 151.0 127 64.6
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 6.6e-34 149.1 376 35.9
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 5.6e-33 146.0 324 36.1
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 9.5e-33 145.2 314 38.9
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 6.2e-32 142.5 293 39.9
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 8.0e-32 142.1 320 35.9
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 2.0e-27 127.5 220 42.3
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 1.3e-26 124.8 321 34.9
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 1.5e-22 111.3 424 29.2
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 1.5e-22 111.3 188 49.5
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 4.4e-22 109.8 106 55.7
unitig_22.g5967 Utricularia gibba HOM05D004638 ORTHO05D005443 1.2e-19 101.7 101 57.4
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 3.0e-18 97.1 331 33.8
Manes.12G121700 Manihot esculenta HOM05D004638 ORTHO05D005443 3.3e-17 93.6 196 39.8
Actinidia16422 Actinidia chinensis HOM05D004638 ORTHO05D005443 4.7e-16 89.7 140 48.6
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 8.1e-16 89.0 145 41.4
arahy.Tifrunner.gnm1.ann1.EFW0VL Arachis hypogaea HOM05D004638 ORTHO05D005443 5.8e-14 82.8 173 35.3
Lj3g0021975 Lotus japonicus HOM05D004638 ORTHO05D005443 3.2e-12 77.0 140 42.9
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 1.1e-09 68.6 84 47.6
Cre02.g082300 Chlamydomonas reinhardtii HOM05D004638 ORTHO05D005443 3.6e-08 63.5 411 26.0
Lsat_1_v5_gn_9_30260 Lactuca sativa HOM05D004638 ORTHO05D005443 5.2e-07 59.7 60 58.3
Nitab4.5_0000047g0220 Nicotiana tabacum HOM05D004638 ORTHO05D005443 6.9e-07 59.3 202 30.7
Medtr2g079040 Medicago truncatula HOM05D004638 ORTHO05D005443 9.0e-07 58.9 50 62.0
Nitab4.5_0000047g0240 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.5e-06 58.2 87 42.5


User provided reference genes

Program Settings