Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p01790 Brassica napus HOM05D000278 ORTHO05D033088 2.7e-55 218.4 109 100.0
AL3G23390 Arabidopsis lyrata HOM05D000278 ORTHO05D004794 2.8e-15 85.5 59 76.3
AT3G11830 Arabidopsis thaliana HOM05D000278 ORTHO05D004794 2.8e-15 85.5 59 76.3
BcaB04g18663 Brassica carinata HOM05D000278 ORTHO05D004794 2.8e-15 85.5 59 76.3
BcaB04g21115 Brassica carinata HOM05D000278 ORTHO05D004794 2.8e-15 85.5 59 76.3
BcaB06g25572 Brassica carinata HOM05D000278 ORTHO05D004794 2.8e-15 85.5 59 76.3
BcaC01g04077 Brassica carinata HOM05D000278 ORTHO05D004794 2.8e-15 85.5 59 76.3
BcaC09g48192 Brassica carinata HOM05D000278 ORTHO05D004794 2.8e-15 85.5 59 76.3
A03p37310 Brassica napus HOM05D000278 ORTHO05D004794 2.8e-15 85.5 59 76.3
BolC1t05287H Brassica oleracea HOM05D000278 ORTHO05D004794 2.8e-15 85.5 59 76.3
BraA01t04158Z Brassica rapa HOM05D000278 ORTHO05D004794 2.8e-15 85.5 59 76.3
BraA03t12891Z Brassica rapa HOM05D000278 ORTHO05D004794 2.8e-15 85.5 59 76.3
SHI25343 Sapria himalayana HOM05D000278 ORTHO05D004794 2.8e-15 85.5 58 75.9
Sp3g10060 Schrenkiella parvula HOM05D000278 ORTHO05D004794 2.8e-15 85.5 59 76.3
Aa31LG3G5320 Aethionema arabicum HOM05D000278 ORTHO05D004794 3.6e-15 85.1 59 74.6
A07p40000 Brassica napus HOM05D000278 ORTHO05D033088 3.6e-15 85.1 44 100.0
Carub.0003s1118 Capsella rubella HOM05D000278 ORTHO05D004794 6.1e-15 84.3 59 74.6
Thhalv10020422m.g Eutrema salsugineum HOM05D000278 ORTHO05D004794 6.1e-15 84.3 59 74.6
Aqoxy6G02051 Aquilegia oxysepala HOM05D000278 ORTHO05D004794 8.0e-15 84.0 59 74.6
Ah.04g164010 Amaranthus hybridus HOM05D000278 ORTHO05D004794 1.0e-14 83.6 59 74.6
CARHR086380 Cardamine hirsuta HOM05D000278 ORTHO05D004794 1.0e-14 83.6 59 74.6
Duzib264G0906 Durio zibethinus HOM05D000278 ORTHO05D004794 1.0e-14 83.6 59 74.6
Gohir.A11G230300 Gossypium hirsutum HOM05D000278 ORTHO05D004794 1.0e-14 83.6 59 74.6
Gohir.D11G229500 Gossypium hirsutum HOM05D000278 ORTHO05D004794 1.0e-14 83.6 59 74.6
Gorai.003G068300 Gossypium raimondii HOM05D000278 ORTHO05D004794 1.0e-14 83.6 59 74.6
Manes.11G109600 Manihot esculenta HOM05D000278 ORTHO05D004794 1.0e-14 83.6 59 74.6
QL01p020501 Quercus lobata HOM05D000278 ORTHO05D004794 1.0e-14 83.6 59 74.6
Sc03g0004270 Simmondsia chinensis HOM05D000278 ORTHO05D004794 1.0e-14 83.6 59 74.6
THA.LOC104826479 Tarenaya hassleriana HOM05D000278 ORTHO05D004794 1.0e-14 83.6 59 74.6
TWI75G0864 Tripterygium wilfordii HOM05D000278 ORTHO05D004794 1.0e-14 83.6 59 74.6
arahy.Tifrunner.gnm1.ann1.H62ZJF Arachis hypogaea HOM05D000278 ORTHO05D004794 1.4e-14 83.2 59 72.9
CSS0017916 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004794 1.4e-14 83.2 59 72.9
TPR.G11653 Trifolium pratense HOM05D000278 ORTHO05D004794 1.4e-14 83.2 59 72.9
MSTRG.11745 Avicennia marina HOM05D000278 ORTHO05D004794 1.8e-14 82.8 59 72.9
Gohir.A12G001300 Gossypium hirsutum HOM05D000278 ORTHO05D004794 1.8e-14 82.8 59 72.9
Gorai.008G000400 Gossypium raimondii HOM05D000278 ORTHO05D004794 1.8e-14 82.8 59 72.9
Aa31LG5G8530 Aethionema arabicum HOM05D000278 ORTHO05D004794 2.3e-14 82.4 59 74.6
BcaC05g29321 Brassica carinata HOM05D000278 ORTHO05D004794 2.3e-14 82.4 59 74.6
A05p37520 Brassica napus HOM05D000278 ORTHO05D004794 2.3e-14 82.4 59 74.6
C05p56080 Brassica napus HOM05D000278 ORTHO05D004794 2.3e-14 82.4 59 74.6
BolC5t34275H Brassica oleracea HOM05D000278 ORTHO05D004794 2.3e-14 82.4 59 74.6
BraA05t22550Z Brassica rapa HOM05D000278 ORTHO05D004794 2.3e-14 82.4 59 74.6
Cc11_g01300 Coffea canephora HOM05D000278 ORTHO05D004794 2.3e-14 82.4 59 72.9
Haze_23638 Corylus avellana HOM05D000278 ORTHO05D004794 2.3e-14 82.4 59 72.9
Duzib147G1120 Durio zibethinus HOM05D000278 ORTHO05D004794 2.3e-14 82.4 59 72.9
Duzib187G1092 Durio zibethinus HOM05D000278 ORTHO05D004794 2.3e-14 82.4 59 72.9
Nn6g31931 Nelumbo nucifera HOM05D000278 ORTHO05D004794 2.3e-14 82.4 59 72.9
Potri.009G157400 Populus trichocarpa HOM05D000278 ORTHO05D004794 2.3e-14 82.4 59 72.9
C03p45300 Brassica napus HOM05D000278 ORTHO05D004794 3.0e-14 82.0 59 74.6
BolC3t16793H Brassica oleracea HOM05D000278 ORTHO05D004794 3.0e-14 82.0 59 74.6
CANSAT35G1978 Cannabis sativa HOM05D000278 ORTHO05D004794 3.0e-14 82.0 58 74.1
Gohir.D12G001100 Gossypium hirsutum HOM05D000278 ORTHO05D004794 4.0e-14 81.6 59 72.9
Hund02336 Selenicereus undatus HOM05D000278 ORTHO05D004794 4.0e-14 81.6 58 74.1
TWI31G0144 Tripterygium wilfordii HOM05D000278 ORTHO05D004794 4.0e-14 81.6 59 71.2
Ciclev10014771m.g Citrus clementina HOM05D000278 ORTHO05D004794 5.2e-14 81.3 59 72.9
COL.COLO4_14011 Corchorus olitorius HOM05D000278 ORTHO05D004794 5.2e-14 81.3 59 72.9
ECA238G3358 Erigeron canadensis HOM05D000278 ORTHO05D004794 5.2e-14 81.3 59 72.9
Eucgr.J00618 Eucalyptus grandis HOM05D000278 ORTHO05D004794 5.2e-14 81.3 59 72.9
HanXRQChr12g0378161 Helianthus annuus HOM05D000278 ORTHO05D004794 5.2e-14 81.3 59 72.9
Hma1.2p1_1466F.1_g285420 Hydrangea macrophylla HOM05D000278 ORTHO05D004794 5.2e-14 81.3 59 72.9
Lalb_Chr04g0249751 Lupinus albus HOM05D000278 ORTHO05D004794 5.2e-14 81.3 59 72.9
Lalb_Chr10g0105841 Lupinus albus HOM05D000278 ORTHO05D004794 5.2e-14 81.3 59 72.9
Medtr5g087560 Medicago truncatula HOM05D000278 ORTHO05D004794 5.2e-14 81.3 59 71.2
PGR119G0569 Punica granatum HOM05D000278 ORTHO05D004794 5.2e-14 81.3 59 72.9
SalBow8G4259 Salvia bowleyana HOM05D000278 ORTHO05D004794 5.2e-14 81.3 59 72.9
SalBow8G4293 Salvia bowleyana HOM05D000278 ORTHO05D004794 5.2e-14 81.3 59 72.9
Thecc.01G126500 Theobroma cacao HOM05D000278 ORTHO05D004794 5.2e-14 81.3 59 72.9
TAR381G1107 Trochodendron aralioides HOM05D000278 ORTHO05D004794 5.2e-14 81.3 59 72.9
unitig_749.g13821 Utricularia gibba HOM05D000278 ORTHO05D004794 5.2e-14 81.3 59 72.9
GSVIVG01002278001 Vitis vinifera HOM05D000278 ORTHO05D004794 5.2e-14 81.3 59 72.9
Zm00001eb207780 Zea mays HOM05D000278 ORTHO05D004794 5.2e-14 81.3 59 72.9
CiPaw.14G092200 Carya illinoinensis HOM05D000278 ORTHO05D004794 6.8e-14 80.9 59 72.9
Glyma.02G273200 Glycine max HOM05D000278 ORTHO05D004794 6.8e-14 80.9 59 71.2
Glyma.14G043400 Glycine max HOM05D000278 ORTHO05D004794 6.8e-14 80.9 59 71.2
LjContig00564g0022207 Lotus japonicus HOM05D000278 ORTHO05D004794 6.8e-14 80.9 59 71.2
MD03G1164100 Malus domestica HOM05D000278 ORTHO05D004794 6.8e-14 80.9 59 72.9
VMungo0647G0629 Vigna mungo HOM05D000278 ORTHO05D004794 6.8e-14 80.9 59 71.2
AUR62013959 Chenopodium quinoa HOM05D000278 ORTHO05D004794 8.9e-14 80.5 59 71.2
AUR62019654 Chenopodium quinoa HOM05D000278 ORTHO05D004794 8.9e-14 80.5 59 71.2
Nitab4.5_0003976g0060 Nicotiana tabacum HOM05D000278 ORTHO05D004794 8.9e-14 80.5 59 71.2
Nitab4.5_0005873g0040 Nicotiana tabacum HOM05D000278 ORTHO05D004794 8.9e-14 80.5 59 71.2
Phvul.008G208800 Phaseolus vulgaris HOM05D000278 ORTHO05D004794 8.9e-14 80.5 59 71.2
THA.LOC104816967 Tarenaya hassleriana HOM05D000278 ORTHO05D004794 8.9e-14 80.5 59 71.2
TAR625G0442 Trochodendron aralioides HOM05D000278 ORTHO05D004794 8.9e-14 80.5 58 74.1
Dinv32114 Davidia involucrata HOM05D000278 ORTHO05D004794 1.2e-13 80.1 59 71.2
Migut.A00285 Erythranthe guttata HOM05D000278 ORTHO05D004794 1.2e-13 80.1 59 71.2
Migut.E01490 Erythranthe guttata HOM05D000278 ORTHO05D004794 1.2e-13 80.1 59 71.2
Peaxi162Scf00038g02039 Petunia axillaris HOM05D000278 ORTHO05D004794 1.2e-13 80.1 59 71.2
Peaxi162Scf00275g00008 Petunia axillaris HOM05D000278 ORTHO05D004794 1.2e-13 80.1 59 71.2
Prupe.6G154400 Prunus persica HOM05D000278 ORTHO05D004794 1.2e-13 80.1 59 72.9
Sabra09G0123000 Salix brachista HOM05D000278 ORTHO05D004794 1.2e-13 80.1 59 71.2
Solyc06g065520.3 Solanum lycopersicum HOM05D000278 ORTHO05D004794 1.2e-13 80.1 59 71.2
Sopen06g024160 Solanum pennellii HOM05D000278 ORTHO05D004794 1.2e-13 80.1 59 71.2
PGSC0003DMG400026124 Solanum tuberosum HOM05D000278 ORTHO05D004794 1.2e-13 80.1 59 71.2
SGA_v2.0_scaffold169G38626 Striga asiatica HOM05D000278 ORTHO05D004794 1.2e-13 80.1 59 71.2
SGA_v2.0_scaffold4G02195 Striga asiatica HOM05D000278 ORTHO05D004794 1.2e-13 80.1 59 71.2
HPP92_007029 Vanilla planifolia HOM05D000278 ORTHO05D004794 1.2e-13 80.1 59 71.2
Actinidia22468 Actinidia chinensis HOM05D000278 ORTHO05D004794 1.5e-13 79.7 59 69.5
FAN16G1090 Fragaria x ananassa HOM05D000278 ORTHO05D004794 1.5e-13 79.7 59 71.2
FAN16G3564 Fragaria x ananassa HOM05D000278 ORTHO05D004794 1.5e-13 79.7 59 71.2
FAN25G3467 Fragaria x ananassa HOM05D000278 ORTHO05D004794 1.5e-13 79.7 59 71.2
RcHm_v2.0_Chr2g0128841 Rosa chinensis HOM05D000278 ORTHO05D004794 1.5e-13 79.7 59 71.2
RcHm_v2.0_Chr5g0049871 Rosa chinensis HOM05D000278 ORTHO05D004794 1.5e-13 79.7 59 71.2
Sabra04G0132500 Salix brachista HOM05D000278 ORTHO05D004794 1.5e-13 79.7 59 71.2
Lj2A907T33 Lonicera japonica HOM05D000278 ORTHO05D004794 2.0e-13 79.3 59 71.2
QL05p031917 Quercus lobata HOM05D000015 ORTHO05D005621 2.0e-13 79.3 77 59.7
Rhsim05G0064500 Rhododendron simsii HOM05D000278 ORTHO05D004794 2.0e-13 79.3 59 71.2
unitig_26.g9787 Utricularia gibba HOM05D000278 ORTHO05D004794 2.0e-13 79.3 59 71.2
vmacro08485 Vaccinium macrocarpon HOM05D000278 ORTHO05D004794 2.0e-13 79.3 59 71.2
EL10Ac4g08419 Beta vulgaris HOM05D000278 ORTHO05D004794 2.6e-13 79.0 59 71.2
ClCG03G014240 Citrullus lanatus HOM05D000278 ORTHO05D004794 2.6e-13 79.0 59 71.2
MELO3C015615.2 Cucumis melo HOM05D000278 ORTHO05D004794 2.6e-13 79.0 59 71.2
CsaV3_1G041990 Cucumis sativus L. HOM05D000278 ORTHO05D004794 2.6e-13 79.0 59 71.2
FvH4_3g27240 Fragaria vesca HOM05D000278 ORTHO05D004794 2.6e-13 79.0 59 71.2
FAN11G3227 Fragaria x ananassa HOM05D000278 ORTHO05D004794 2.6e-13 79.0 59 71.2
MBI08_g21308_MAGBIO Magnolia biondii HOM05D000278 ORTHO05D004794 2.6e-13 79.0 59 69.5
Potri.004G195100 Populus trichocarpa HOM05D000278 ORTHO05D004794 2.6e-13 79.0 59 69.5
Potri.004G195300 Populus trichocarpa HOM05D000278 ORTHO05D004794 2.6e-13 79.0 59 69.5
Actinidia06356 Actinidia chinensis HOM05D000278 ORTHO05D004794 3.4e-13 78.6 59 69.5
Cpa.g.sc103.86 Carica papaya HOM05D000278 ORTHO05D004794 3.4e-13 78.6 58 70.7
DCAR_023796 Daucus carota HOM05D000278 ORTHO05D004794 3.4e-13 78.6 59 71.2
DCAR_027486 Daucus carota HOM05D000278 ORTHO05D004794 3.4e-13 78.6 59 71.2
HanXRQChr15g0468701 Helianthus annuus HOM05D000278 ORTHO05D004794 3.4e-13 78.6 59 71.2
Psat0s921g0240 Pisum sativum HOM05D000278 ORTHO05D004794 3.4e-13 78.6 59 69.5
SMO347G0357 Selaginella moellendorffii HOM05D000278 ORTHO05D004794 3.4e-13 78.6 59 71.2
CDE02G3738 Ceratophyllum demersum HOM05D000278 ORTHO05D004794 4.4e-13 78.2 58 72.4
CDE06G0515 Ceratophyllum demersum HOM05D000278 ORTHO05D004794 4.4e-13 78.2 58 72.4
Lsat_1_v5_gn_5_64940 Lactuca sativa HOM05D000278 ORTHO05D004794 4.4e-13 78.2 59 71.2
Sed0019588 Sechium edule HOM05D000278 ORTHO05D004794 4.4e-13 78.2 59 69.5
Dinv32841 Davidia involucrata HOM05D000278 ORTHO05D004794 5.8e-13 77.8 59 69.5
Sed0013756 Sechium edule HOM05D000278 ORTHO05D004794 7.5e-13 77.4 59 67.8
PSO541G3784 Papaver somniferum HOM05D000278 ORTHO05D004794 1.3e-12 76.6 59 67.8
PSO675G7679 Papaver somniferum HOM05D000278 ORTHO05D004794 1.3e-12 76.6 59 67.8
ATR0661G304 Amborella trichopoda HOM05D000278 ORTHO05D004794 2.9e-12 75.5 58 70.7
Pp3c15_8230 Physcomitrium patens HOM05D000278 ORTHO05D004794 8.3e-12 73.9 59 66.1
Pp3c9_14010 Physcomitrium patens HOM05D000278 ORTHO05D004794 8.3e-12 73.9 59 66.1
TAR628G0924 Trochodendron aralioides HOM05D000278 ORTHO05D004794 1.1e-11 73.6 59 69.5
Mapoly0156s0015 Marchantia polymorpha HOM05D000278 ORTHO05D004794 3.2e-11 72.0 59 64.4
CBR_g42151 Chara braunii HOM05D000278 ORTHO05D004794 4.1e-11 71.6 58 67.2
AagrBONN_evm.TU.Sc2ySwM_117.2607 Anthoceros agrestis HOM05D000278 ORTHO05D004794 5.4e-11 71.2 59 64.4
Cre01.g026550 Chlamydomonas reinhardtii HOM05D000278 ORTHO05D004794 5.4e-11 71.2 58 65.5
PRCOL_00005497 Prasinoderma coloniale HOM05D000278 ORTHO05D004794 1.6e-10 69.7 58 63.8
Cc00_g07390 Coffea canephora HOM05D000218 ORTHO05D004794 2.0e-10 69.3 54 68.5
MCO06G165 Micromonas commoda HOM05D000278 ORTHO05D004794 3.5e-10 68.6 59 59.3
Cc00_g07900 Coffea canephora HOM05D000218 ORTHO05D004794 4.6e-10 68.2 54 66.7
Cc00_g19550 Coffea canephora HOM05D000218 ORTHO05D000125 6.0e-10 67.8 52 69.2
SEGI_21483 Sequoiadendron giganteum HOM05D000278 ORTHO05D004794 7.8e-10 67.4 54 64.8
Cc00_g15470 Coffea canephora HOM05D000218 ORTHO05D004794 3.0e-09 65.5 84 52.4
Cc00_g09680 Coffea canephora HOM05D000218 ORTHO05D000125 5.6e-08 61.2 43 69.8
Os06g0320850 Oryza sativa ssp. japonica HOM05D000278 ORTHO05D033088 9.5e-08 60.5 58 58.6
CSS0003568 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004794 1.6e-07 59.7 35 82.9
Cfa025880 Carpinus fangiana HOM05D000278 ORTHO05D004794 2.1e-07 59.3 58 51.7
Atru.chr3.2916 Acer truncatum HOM05D000278 ORTHO05D004794 8.9e-06 53.9 33 81.8


User provided reference genes

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