Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p01480 Brassica napus HOM05D002916 ORTHO05D003152 3.9e-99 364.8 179 100.0
BraA03t09526Z Brassica rapa HOM05D002916 ORTHO05D003152 3.9e-99 364.8 179 100.0
C03p01810 Brassica napus HOM05D002916 ORTHO05D003152 1.0e-91 340.1 181 93.9
BolC3t12736H Brassica oleracea HOM05D002916 ORTHO05D003152 1.4e-69 266.5 150 89.3
Sp6g38840 Schrenkiella parvula HOM05D002916 ORTHO05D003152 5.1e-67 258.1 173 79.2
A10p32230 Brassica napus HOM05D002916 ORTHO05D003152 6.9e-64 247.7 175 73.7
BraA10t45266Z Brassica rapa HOM05D002916 ORTHO05D003152 6.9e-64 247.7 175 73.7
C09p73040 Brassica napus HOM05D002916 ORTHO05D003152 1.3e-62 243.4 175 71.4
BcaB01g05762 Brassica carinata HOM05D002916 ORTHO05D003152 2.2e-62 242.7 179 70.9
AT5G03890 Arabidopsis thaliana HOM05D002916 ORTHO05D003152 6.5e-62 241.1 181 72.9
CARHR209370 Cardamine hirsuta HOM05D002916 ORTHO05D003152 6.5e-62 241.1 180 71.7
AL6G13470 Arabidopsis lyrata HOM05D002916 ORTHO05D003152 8.4e-62 240.7 181 73.5
Thhalv10014801m.g Eutrema salsugineum HOM05D002916 ORTHO05D003152 1.1e-61 240.4 181 73.5
BolC9t60038H Brassica oleracea HOM05D002916 ORTHO05D003152 1.4e-61 240.0 176 71.6
BcaC06g32092 Brassica carinata HOM05D002916 ORTHO05D003152 1.0e-59 233.8 169 70.4
Carub.0006s0284 Capsella rubella HOM05D002916 ORTHO05D003152 2.2e-54 216.1 182 67.0
BolC5t34456H Brassica oleracea HOM05D002916 ORTHO05D003152 1.2e-47 193.7 184 59.2
C05p58000 Brassica napus HOM05D002916 ORTHO05D003152 2.6e-47 192.6 185 58.4
BcaNung06240 Brassica carinata HOM05D002916 ORTHO05D003152 1.3e-46 190.3 185 57.8
A05p38970 Brassica napus HOM05D002916 ORTHO05D003152 8.5e-46 187.6 183 58.5
BraA05t22688Z Brassica rapa HOM05D002916 ORTHO05D003152 1.4e-45 186.8 183 57.9
AT3G10120 Arabidopsis thaliana HOM05D002916 ORTHO05D003152 1.9e-45 186.4 185 60.0
Sp3g08400 Schrenkiella parvula HOM05D002916 ORTHO05D003152 5.5e-45 184.9 186 59.1
Thhalv10021626m.g Eutrema salsugineum HOM05D002916 ORTHO05D003152 4.6e-44 181.8 183 57.9
AL3G21460 Arabidopsis lyrata HOM05D002916 ORTHO05D003152 1.0e-43 180.6 195 57.4
Carub.0008s0814 Capsella rubella HOM05D002916 ORTHO05D003152 3.9e-43 178.7 186 56.5
BcaNung05911 Brassica carinata HOM05D002916 ORTHO05D003152 6.7e-43 177.9 187 55.6
BcaB04g21229 Brassica carinata HOM05D002916 ORTHO05D003152 2.0e-42 176.4 184 55.4
BolC1t05420H Brassica oleracea HOM05D002916 ORTHO05D003152 2.0e-42 176.4 181 57.5
BcaC09g48115 Brassica carinata HOM05D002916 ORTHO05D003152 3.3e-42 175.6 181 56.9
THA.LOC104816397 Tarenaya hassleriana HOM05D002916 ORTHO05D003152 1.7e-41 173.3 180 55.6
CARHR084600 Cardamine hirsuta HOM05D002916 ORTHO05D003152 3.7e-41 172.2 188 55.9
Aa31LG3G2650 Aethionema arabicum HOM05D002916 ORTHO05D003152 2.1e-36 156.4 208 46.2
A05p13670 Brassica napus HOM05D002916 ORTHO05D003152 2.7e-36 156.0 136 59.6
A01p42040 Brassica napus HOM05D002916 ORTHO05D003152 2.0e-31 139.8 158 53.8
BraA01t04273Z Brassica rapa HOM05D002916 ORTHO05D003152 2.0e-31 139.8 158 53.8
COL.COLO4_29727 Corchorus olitorius HOM05D002916 ORTHO05D003152 2.0e-31 139.8 183 43.2
Cpa.g.sc5.15 Carica papaya HOM05D002916 ORTHO05D003152 1.7e-30 136.7 186 41.4
Gorai.002G239800 Gossypium raimondii HOM05D002916 ORTHO05D003152 1.2e-28 130.6 182 41.2
Duzib093G0112 Durio zibethinus HOM05D002916 ORTHO05D003152 1.6e-28 130.2 183 42.1
Glyma.19G194943 Glycine max HOM05D002916 ORTHO05D003152 6.1e-28 128.3 178 41.6
Rhsim03G0074900 Rhododendron simsii HOM05D002916 ORTHO05D003152 8.0e-28 127.9 187 39.6
Gohir.D01G195600 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.0e-27 127.5 182 40.7
THA.LOC104826943 Tarenaya hassleriana HOM05D002916 ORTHO05D003152 1.0e-27 127.5 179 44.1
Atru.chr8.1530 Acer truncatum HOM05D002916 ORTHO05D003152 2.3e-27 126.3 179 41.9
Atru.chr8.1528 Acer truncatum HOM05D002916 ORTHO05D003152 3.9e-27 125.6 179 41.9
Thecc.05G089800 Theobroma cacao HOM05D002916 ORTHO05D003152 3.9e-27 125.6 184 41.3
Prupe.7G109500 Prunus persica HOM05D002916 ORTHO05D003152 5.2e-27 125.2 184 42.4
Duzib128G0442 Durio zibethinus HOM05D002916 ORTHO05D003152 1.5e-26 123.6 183 40.4
Manes.08G025700 Manihot esculenta HOM05D002916 ORTHO05D003152 1.5e-26 123.6 184 41.3
Gohir.A01G206200 Gossypium hirsutum HOM05D002916 ORTHO05D003152 2.6e-26 122.9 184 39.7
Gohir.D09G135200 Gossypium hirsutum HOM05D002916 ORTHO05D003152 2.6e-26 122.9 185 40.5
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 3.3e-26 122.5 183 38.3
Manes.09G055000 Manihot esculenta HOM05D002916 ORTHO05D003152 3.3e-26 122.5 180 40.6
Gohir.A07G134900 Gossypium hirsutum HOM05D002916 ORTHO05D003152 9.7e-26 120.9 185 39.5
Peaxi162Scf00404g00102 Petunia axillaris HOM05D002916 ORTHO05D003152 9.7e-26 120.9 191 39.3
Phvul.001G190500 Phaseolus vulgaris HOM05D002916 ORTHO05D003152 1.3e-25 120.6 181 38.1
Gohir.A04G062400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.7e-25 120.2 181 39.2
Gorai.006G155100 Gossypium raimondii HOM05D002916 ORTHO05D003152 2.2e-25 119.8 185 40.0
Gohir.A11G003500 Gossypium hirsutum HOM05D002916 ORTHO05D003152 3.7e-25 119.0 180 39.4
Nn6g34891 Nelumbo nucifera HOM05D002916 ORTHO05D003152 4.8e-25 118.6 180 41.1
Ciclev10012941m.g Citrus clementina HOM05D002916 ORTHO05D003152 6.3e-25 118.2 180 39.4
Gorai.009G402300 Gossypium raimondii HOM05D002916 ORTHO05D003152 6.3e-25 118.2 181 39.2
Gohir.D04G099400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.1e-24 117.5 181 39.2
Glyma.03G196300 Glycine max HOM05D002916 ORTHO05D003152 1.4e-24 117.1 179 41.3
Gohir.A09G139400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 2.4e-24 116.3 142 45.1
Nn2g14164 Nelumbo nucifera HOM05D002916 ORTHO05D003152 3.1e-24 115.9 184 38.6
MD12G1036700 Malus domestica HOM05D002916 ORTHO05D003152 5.3e-24 115.2 189 39.2
Gohir.A05G000100 Gossypium hirsutum HOM05D002916 ORTHO05D003152 9.1e-24 114.4 185 38.9
Oeu047865.1 Olea europaea HOM05D002916 ORTHO05D003152 9.1e-24 114.4 181 35.9
FvH4_6g18810 Fragaria vesca HOM05D002916 ORTHO05D003152 1.2e-23 114.0 183 39.3
FAN14G1204 Fragaria x ananassa HOM05D002916 ORTHO05D003152 1.2e-23 114.0 183 39.3
FAN02G4366 Fragaria x ananassa HOM05D002916 ORTHO05D003152 2.0e-23 113.2 186 39.2
VMungo1383G0514 Vigna mungo HOM05D002916 ORTHO05D003152 2.0e-23 113.2 185 41.1
DCAR_013390 Daucus carota HOM05D002916 ORTHO05D003152 5.9e-23 111.7 180 35.0
RcHm_v2.0_Chr3g0473821 Rosa chinensis HOM05D002916 ORTHO05D003152 5.9e-23 111.7 186 38.7
TWI53G0172 Tripterygium wilfordii HOM05D002916 ORTHO05D003152 5.9e-23 111.7 186 37.1
Oeu056929.1 Olea europaea HOM05D002916 ORTHO05D003152 7.7e-23 111.3 182 35.7
FAN05G3486 Fragaria x ananassa HOM05D002916 ORTHO05D003152 1.0e-22 110.9 183 37.7
Sed0018474 Sechium edule HOM05D002916 ORTHO05D003152 1.3e-22 110.5 184 39.1
Ciclev10013433m.g Citrus clementina HOM05D002916 ORTHO05D003152 1.7e-22 110.2 188 36.7
Lalb_Chr01g0018131 Lupinus albus HOM05D002916 ORTHO05D003152 2.9e-22 109.4 192 38.0
FAN05G4254 Fragaria x ananassa HOM05D002916 ORTHO05D003152 3.8e-22 109.0 183 37.2
PGSC0003DMG400008880 Solanum tuberosum HOM05D002916 ORTHO05D003152 3.8e-22 109.0 196 36.7
Lj1g0017693 Lotus japonicus HOM05D002916 ORTHO05D003152 5.0e-22 108.6 189 37.6
Potri.006G213100 Populus trichocarpa HOM05D002916 ORTHO05D003152 5.0e-22 108.6 190 36.8
Potri.016G079700 Populus trichocarpa HOM05D002916 ORTHO05D003152 5.0e-22 108.6 184 38.0
Aqoxy4G02773 Aquilegia oxysepala HOM05D002916 ORTHO05D003152 1.5e-21 107.1 182 37.9
Eucgr.K02033 Eucalyptus grandis HOM05D002916 ORTHO05D003152 1.9e-21 106.7 191 36.6
PGR142G0380 Punica granatum HOM05D002916 ORTHO05D003152 1.9e-21 106.7 200 36.5
Ca_09009_v3 Cicer arietinum L. HOM05D002916 ORTHO05D003152 2.5e-21 106.3 185 40.0
CANSAT64G0492 Cannabis sativa HOM05D002916 ORTHO05D003152 3.2e-21 105.9 201 39.3
Glyma.10G072400 Glycine max HOM05D002916 ORTHO05D003152 5.5e-21 105.1 184 34.8
TWI74G0225 Tripterygium wilfordii HOM05D002916 ORTHO05D003152 5.5e-21 105.1 184 37.5
DCAR_013389 Daucus carota HOM05D002916 ORTHO05D003152 9.4e-21 104.4 180 33.9
Glyma.13G153800 Glycine max HOM05D002916 ORTHO05D003152 9.4e-21 104.4 184 35.3
DCAR_013392 Daucus carota HOM05D002916 ORTHO05D003152 1.2e-20 104.0 180 34.4
DCAR_013391 Daucus carota HOM05D002916 ORTHO05D003152 6.1e-20 101.7 182 33.5
QL05p034193 Quercus lobata HOM05D002916 ORTHO05D003152 1.0e-19 100.9 182 36.8
Solyc09g009810.1 Solanum lycopersicum HOM05D002916 ORTHO05D003152 1.8e-19 100.1 195 35.4
Sabra16G0085600 Salix brachista HOM05D002916 ORTHO05D003152 8.8e-19 97.8 180 36.1
Sabra16G0087700 Salix brachista HOM05D002916 ORTHO05D003152 8.8e-19 97.8 180 36.1
Actinidia05426 Actinidia chinensis HOM05D002916 ORTHO05D003152 1.5e-18 97.1 184 35.3
DCAR_009166 Daucus carota HOM05D002916 ORTHO05D003152 5.7e-18 95.1 182 35.7
Sabra06G0164100 Salix brachista HOM05D002916 ORTHO05D003152 7.5e-18 94.7 144 40.3
CsaV3_6G040690 Cucumis sativus L. HOM05D002916 ORTHO05D003152 9.8e-18 94.4 190 33.7
MELO3C024547.2 Cucumis melo HOM05D002916 ORTHO05D003152 1.3e-17 94.0 189 33.9
PSO339G4347 Papaver somniferum HOM05D002916 ORTHO05D003152 1.7e-17 93.6 185 31.4
DCAR_007755 Daucus carota HOM05D002916 ORTHO05D003152 2.8e-17 92.8 176 32.4
Hma1.2p1_0084F.1_g043850 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 4.8e-17 92.0 176 34.7
Hma1.2p1_0820F.1_g223855 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 4.8e-17 92.0 176 34.7
AUR62028520 Chenopodium quinoa HOM05D002916 ORTHO05D003152 8.3e-17 91.3 179 32.4
ClCG04G010060 Citrullus lanatus HOM05D002916 ORTHO05D003152 8.3e-17 91.3 187 32.1
Cc06_g05820 Coffea canephora HOM05D002916 ORTHO05D003152 8.3e-17 91.3 181 32.6
CiPaw.01G252200 Carya illinoinensis HOM05D002916 ORTHO05D003152 1.4e-16 90.5 184 35.9
BolC6t35258H Brassica oleracea HOM05D002916 ORTHO05D003152 1.8e-16 90.1 76 57.9
Haze_16636 Corylus avellana HOM05D002916 ORTHO05D003152 7.0e-16 88.2 186 33.9
MD14G1023400 Malus domestica HOM05D002916 ORTHO05D003152 7.0e-16 88.2 186 34.9
Ah.15g090860 Amaranthus hybridus HOM05D002916 ORTHO05D003152 1.2e-15 87.4 181 34.8
Migut.L01781 Erythranthe guttata HOM05D002916 ORTHO05D003152 1.2e-15 87.4 186 30.6
Haze_16634 Corylus avellana HOM05D002916 ORTHO05D003152 1.6e-15 87.0 186 33.3
Cfa001906 Carpinus fangiana HOM05D002916 ORTHO05D003152 2.0e-15 86.7 186 33.3
AUR62006186 Chenopodium quinoa HOM05D002916 ORTHO05D003152 2.0e-15 86.7 179 33.0
PGR004G1189 Punica granatum HOM05D002916 ORTHO05D003152 2.0e-15 86.7 186 31.2
arahy.Tifrunner.gnm1.ann1.1GMW3T Arachis hypogaea HOM05D002916 ORTHO05D003152 2.2e-14 83.2 188 30.9
arahy.Tifrunner.gnm1.ann1.T8X57X Arachis hypogaea HOM05D002916 ORTHO05D003152 2.2e-14 83.2 188 30.9
C06p01440 Brassica napus HOM05D002916 ORTHO05D003152 2.2e-14 83.2 71 56.3
Actinidia31270 Actinidia chinensis HOM05D002916 ORTHO05D003152 8.5e-14 81.3 171 31.6
MSTRG.26638 Avicennia marina HOM05D002916 ORTHO05D003152 8.5e-14 81.3 182 28.6
Migut.J01032 Erythranthe guttata HOM05D002916 ORTHO05D003152 1.5e-13 80.5 158 36.1
Lsat_1_v5_gn_5_164861 Lactuca sativa HOM05D002916 ORTHO05D003152 2.1e-12 76.6 177 32.8
SEGI_19412 Sequoiadendron giganteum HOM05D002916 ORTHO05D003152 3.6e-12 75.9 194 31.4
BcaC05g24792 Brassica carinata HOM05D002916 ORTHO05D003152 1.4e-11 73.9 56 66.1
BcaC08g42908 Brassica carinata HOM05D002916 ORTHO05D003152 2.3e-11 73.2 52 65.4
ClCG01G000110 Citrullus lanatus HOM05D002916 ORTHO05D003152 2.3e-11 73.2 169 30.8
Haze_00282 Corylus avellana HOM05D002916 ORTHO05D003152 4.0e-11 72.4 191 28.8
BraA05t21437Z Brassica rapa HOM05D002916 ORTHO05D003152 6.8e-11 71.6 78 55.1
Sed0016396 Sechium edule HOM05D002916 ORTHO05D003152 8.8e-11 71.2 170 32.4
Prupe.2G317800 Prunus persica HOM05D002916 ORTHO05D003152 1.2e-10 70.9 184 29.9
QL09p007312 Quercus lobata HOM05D002916 ORTHO05D003152 2.0e-10 70.1 186 29.0
PSO384G2526 Papaver somniferum HOM05D002916 ORTHO05D003152 2.6e-10 69.7 186 28.5
Sopen09g004570 Solanum pennellii HOM05D002916 ORTHO05D003152 2.6e-10 69.7 181 32.0
DCAR_008976 Daucus carota HOM05D002916 ORTHO05D003152 3.4e-10 69.3 192 24.0
ATR0078G023 Amborella trichopoda HOM05D002916 ORTHO05D003152 5.7e-10 68.6 188 27.1
Cfa016172 Carpinus fangiana HOM05D002916 ORTHO05D003152 9.8e-10 67.8 168 31.0
MBI04_g15577_MAGBIO Magnolia biondii HOM05D002916 ORTHO05D003152 1.3e-09 67.4 184 26.6
Thecc.03G207400 Theobroma cacao HOM05D002916 ORTHO05D003152 1.3e-09 67.4 180 30.6
MELO3C005922.2 Cucumis melo HOM05D002916 ORTHO05D003152 1.7e-09 67.0 167 31.1
SGA_v2.0_scaffold184G39965 Striga asiatica HOM05D002916 ORTHO05D003152 1.7e-09 67.0 121 35.5
CiPaw.06G042000 Carya illinoinensis HOM05D002916 ORTHO05D003152 2.2e-09 66.6 191 27.2
CsaV3_5G000050 Cucumis sativus L. HOM05D002916 ORTHO05D003152 6.3e-09 65.1 167 31.1
Duzib084G1372 Durio zibethinus HOM05D002916 ORTHO05D003152 8.3e-09 64.7 169 27.8
Glyma.06G135000 Glycine max HOM05D002916 ORTHO05D003152 8.3e-09 64.7 175 26.3
Psat5g073040 Pisum sativum HOM05D002916 ORTHO05D003152 1.1e-08 64.3 190 26.3
BolC3t19576H Brassica oleracea HOM05D002916 ORTHO05D003152 1.8e-08 63.5 45 71.1
Gohir.D12G247400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.8e-08 63.5 184 28.8
CANSAT21G0001 Cannabis sativa HOM05D002916 ORTHO05D003152 2.4e-08 63.2 178 27.5
Sabra12G0011500 Salix brachista HOM05D002916 ORTHO05D003152 3.1e-08 62.8 194 27.3
Dinv29219 Davidia involucrata HOM05D002916 ORTHO05D003152 5.4e-08 62.0 180 27.8
Glyma.04G229700 Glycine max HOM05D002916 ORTHO05D003152 5.4e-08 62.0 79 36.7
Gorai.008G265400 Gossypium raimondii HOM05D002916 ORTHO05D003152 5.4e-08 62.0 169 29.0
SEGI_19965 Sequoiadendron giganteum HOM05D002916 ORTHO05D003152 5.4e-08 62.0 188 28.7
Manes.01G042300 Manihot esculenta HOM05D002916 ORTHO05D003152 7.0e-08 61.6 164 26.2
Potri.012G022300 Populus trichocarpa HOM05D002916 ORTHO05D003152 7.0e-08 61.6 182 27.5
Nitab4.5_0003610g0010 Nicotiana tabacum HOM05D002916 ORTHO05D003152 9.1e-08 61.2 178 28.7
SalBow4G3036 Salvia bowleyana HOM05D002916 ORTHO05D003152 9.1e-08 61.2 123 38.2
VMungo1309G2175 Vigna mungo HOM05D002916 ORTHO05D003152 9.1e-08 61.2 178 25.8
CSS0010688 Camellia sinensis var. sinensis HOM05D002916 ORTHO05D003152 1.2e-07 60.8 136 32.4
Nitab4.5_0001712g0010 Nicotiana tabacum HOM05D002916 ORTHO05D003152 1.2e-07 60.8 128 34.4
Hma1.2p1_0094F.1_g047290 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 1.6e-07 60.5 193 25.9
Nitab4.5_0000794g0180 Nicotiana tabacum HOM05D002916 ORTHO05D003152 1.6e-07 60.5 59 39.0
Gohir.A12G246700 Gossypium hirsutum HOM05D002916 ORTHO05D003152 3.5e-07 59.3 184 26.6
Eucgr.K00425 Eucalyptus grandis HOM05D002916 ORTHO05D003152 4.5e-07 58.9 182 28.6
TAR623G0367 Trochodendron aralioides HOM05D002916 ORTHO05D003152 4.5e-07 58.9 132 34.1
TPR.G9174 Trifolium pratense HOM05D002255 ORTHO05D002288 5.9e-07 58.5 76 39.5
TAR636G0145 Trochodendron aralioides HOM05D002916 ORTHO05D003152 5.9e-07 58.5 191 24.6
TPR.G23310 Trifolium pratense HOM05D002916 ORTHO05D003152 7.7e-07 58.2 180 28.3
Ca_16766_v3 Cicer arietinum L. HOM05D002916 ORTHO05D003152 1.3e-06 57.4 193 26.4
DCAR_020363 Daucus carota HOM05D002916 ORTHO05D003152 2.3e-06 56.6 195 24.6
THA.LOC104809298 Tarenaya hassleriana HOM05D002255 ORTHO05D002288 2.3e-06 56.6 75 44.0
Medtr6g052290 Medicago truncatula HOM05D002255 ORTHO05D002288 2.9e-06 56.2 82 37.8
Medtr3g092470 Medicago truncatula HOM05D002916 ORTHO05D003152 3.8e-06 55.8 182 30.2
Phvul.009G046400 Phaseolus vulgaris HOM05D002916 ORTHO05D003152 3.8e-06 55.8 70 42.9
PGR042G3508 Punica granatum HOM05D002916 ORTHO05D003152 5.0e-06 55.5 177 28.8
PSO478G4153 Papaver somniferum HOM05D002916 ORTHO05D003152 6.6e-06 55.1 175 24.6
Rhsim03G0214600 Rhododendron simsii HOM05D001023 ORTHO05D000912 6.6e-06 55.1 140 29.3
Haze_09193 Corylus avellana HOM05D002916 ORTHO05D003152 8.6e-06 54.7 187 25.7


User provided reference genes

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