Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 2.6e-286 988.0 497 100.0
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 8.1e-280 966.5 497 97.2
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 3.1e-279 964.5 497 97.0
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 1.2e-278 962.6 497 97.0
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 1.7e-277 958.7 500 96.8
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 2.2e-277 958.4 500 96.0
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 3.7e-277 957.6 500 96.6
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 1.4e-276 955.7 501 96.4
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 1.4e-276 955.7 501 96.4
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 2.4e-276 954.9 501 96.6
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 1.2e-275 952.6 500 95.6
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 1.5e-270 935.6 504 93.7
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 1.3e-269 932.6 481 97.5
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 4.2e-268 927.5 499 93.0
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 1.6e-267 925.6 498 93.4
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 2.1e-267 925.2 508 91.7
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 1.0e-266 922.9 502 93.2
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 2.3e-266 921.8 500 92.6
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 1.9e-265 918.7 502 92.8
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 1.6e-264 915.6 499 92.6
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 2.4e-263 911.8 499 92.2
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 1.7e-258 895.6 497 89.7
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 5.3e-247 857.4 495 87.9
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 7.9e-243 843.6 507 83.4
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 1.2e-235 819.7 445 93.3
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 4.3e-233 811.2 499 81.8
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 5.3e-223 777.7 503 75.9
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 1.3e-221 773.1 505 78.0
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 3.8e-221 771.5 509 75.0
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 3.2e-220 768.5 500 76.4
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 9.4e-220 766.9 509 74.7
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 4.7e-219 764.6 512 74.4
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 3.0e-218 761.9 509 74.5
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 5.1e-218 761.1 509 74.3
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 1.1e-217 760.0 504 75.2
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 1.4e-215 753.1 508 74.4
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 9.1e-215 750.4 503 74.6
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 1.2e-214 750.0 514 72.8
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 1.2e-214 750.0 510 73.5
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 1.2e-214 750.0 506 75.1
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 3.5e-214 748.4 508 74.2
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 2.9e-213 745.3 508 72.0
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 5.0e-213 744.6 508 72.4
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 1.5e-212 743.0 510 72.7
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.5e-212 743.0 511 72.8
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 5.5e-212 741.1 508 73.6
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 5.5e-212 741.1 508 74.0
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 3.6e-211 738.4 506 72.7
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 3.6e-211 738.4 509 73.7
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 2.3e-210 735.7 503 73.4
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 3.0e-210 735.3 507 71.6
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 7.5e-209 730.7 509 70.9
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 7.5e-209 730.7 505 71.5
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 2.8e-208 728.8 507 72.2
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 3.7e-208 728.4 505 72.1
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 8.2e-208 727.2 504 71.6
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 8.2e-208 727.2 509 71.5
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 4.1e-207 724.9 512 71.5
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 9.1e-207 723.8 509 69.9
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 2.7e-206 722.2 514 71.0
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 3.5e-206 721.8 512 70.3
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.7e-205 719.5 514 70.4
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 2.9e-205 718.8 510 71.0
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 2.9e-205 718.8 506 70.8
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 3.8e-205 718.4 513 70.4
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 1.1e-204 716.8 509 71.3
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 1.9e-204 716.1 509 71.3
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 1.2e-203 713.4 547 66.7
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 2.1e-203 712.6 548 66.2
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 3.6e-203 711.8 505 70.1
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 4.7e-203 711.4 547 66.7
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 4.7e-203 711.4 508 70.9
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 4.7e-203 711.4 502 70.7
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 6.1e-203 711.1 476 74.4
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 4.0e-202 708.4 506 69.8
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 2.0e-201 706.1 511 69.9
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 7.5e-201 704.1 492 71.7
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 6.3e-200 701.0 512 68.9
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 1.8e-199 699.5 498 70.7
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 3.1e-199 698.7 513 68.4
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 5.4e-199 698.0 474 75.3
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 1.2e-198 696.8 513 66.9
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 3.5e-198 695.3 499 70.3
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 5.9e-198 694.5 501 69.7
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 7.7e-198 694.1 508 70.5
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.0e-197 693.7 499 70.1
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 2.2e-197 692.6 513 68.4
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 3.8e-197 691.8 510 68.2
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 1.1e-196 690.3 477 72.7
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.9e-196 689.5 508 70.1
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 3.2e-196 688.7 505 67.5
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 5.5e-196 688.0 478 72.2
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 2.3e-194 682.6 601 60.2
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 1.2e-193 680.2 513 67.6
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 3.7e-192 675.2 505 67.9
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 4.9e-192 674.9 509 67.0
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 5.4e-191 671.4 526 64.4
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 5.4e-191 671.4 513 67.8
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 1.6e-190 669.8 506 67.2
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 2.0e-190 669.5 452 75.4
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 4.3e-188 661.8 459 71.2
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 6.1e-187 657.9 492 66.3
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 8.0e-187 657.5 508 67.9
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.8e-186 656.4 508 67.7
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 1.8e-186 656.4 489 67.9
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 2.3e-186 656.0 505 65.3
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 4.4e-185 651.7 582 59.3
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 7.5e-185 651.0 504 64.7
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 7.5e-185 651.0 567 61.4
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 4.9e-184 648.3 534 65.4
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 4.9e-184 648.3 445 72.8
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 1.8e-183 646.4 504 63.5
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 7.0e-183 644.4 507 66.7
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 3.5e-182 642.1 507 66.3
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 5.9e-182 641.3 525 64.0
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 6.6e-181 637.9 504 65.3
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 1.0e-178 630.6 528 63.3
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 1.8e-178 629.8 509 62.9
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 6.8e-178 627.9 508 64.0
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 2.0e-177 626.3 504 62.9
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 9.8e-177 624.0 514 64.4
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 1.2e-171 607.1 472 65.9
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 2.0e-161 573.2 404 71.5
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 4.6e-158 562.0 399 70.2
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 7.3e-156 554.7 541 53.8
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 6.9e-146 521.5 532 51.5
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 9.0e-146 521.2 663 47.1
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 3.4e-145 519.2 492 58.5
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 6.0e-142 508.4 416 61.8
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 6.7e-133 478.4 453 58.7
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 1.5e-129 467.2 437 58.1
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 3.9e-125 452.6 337 67.7
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.0e-117 427.9 270 79.3
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 1.2e-113 414.5 273 75.1
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 3.2e-103 379.8 279 69.2
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 8.0e-86 322.0 243 67.5
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 7.5e-84 315.5 264 59.8
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 7.7e-81 305.4 211 69.2
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 4.2e-79 299.7 261 58.6
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 9.8e-76 288.5 492 39.8
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 2.6e-68 263.8 214 63.6
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 3.0e-64 250.4 559 32.9
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 1.3e-56 224.9 388 36.1
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 8.4e-43 179.1 138 64.5
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 3.5e-41 173.7 173 54.9
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 5.1e-40 169.9 106 78.3
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 1.3e-35 155.2 184 43.5
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 8.7e-32 142.5 121 64.5
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 3.6e-30 137.1 245 39.6
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.1e-29 135.6 245 39.2
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 2.6e-28 131.0 68 86.8
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 1.3e-27 128.6 114 55.3
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 7.4e-23 112.8 80 72.5
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 4.2e-18 97.1 183 29.0
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 1.4e-13 82.0 114 44.7
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 1.8e-13 81.6 72 61.1
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 1.7e-11 75.1 61 63.9
Cre01.g026650 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D007141 1.3e-08 65.5 208 26.4
ECA233G2956 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.8e-08 65.1 105 42.9
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 5.1e-08 63.5 80 47.5
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 6.7e-08 63.2 127 29.1
SEGI_37303 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 8.7e-08 62.8 75 38.7
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 8.7e-08 62.8 36 80.6
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 3.3e-07 60.8 36 75.0


User provided reference genes

Program Settings