Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p00670 Brassica napus HOM05D005843 ORTHO05D007781 1.1e-292 1009.2 509 100.0
BraA03t09456Z Brassica rapa HOM05D005843 ORTHO05D007781 2.0e-281 971.8 519 94.8
C03p00940 Brassica napus HOM05D005843 ORTHO05D007781 4.2e-276 954.1 506 95.7
BolC3t12656H Brassica oleracea HOM05D005843 ORTHO05D007781 4.2e-276 954.1 506 95.7
BcaB01g06160 Brassica carinata HOM05D005843 ORTHO05D007781 2.6e-273 944.9 506 94.5
BcaNung05922 Brassica carinata HOM05D005843 ORTHO05D007781 2.3e-258 895.2 509 89.2
A10p33250 Brassica napus HOM05D005843 ORTHO05D007781 4.4e-257 891.0 511 88.5
BolC9t60149H Brassica oleracea HOM05D005843 ORTHO05D007781 5.4e-255 884.0 511 88.1
BcaNung02129 Brassica carinata HOM05D005843 ORTHO05D007781 1.0e-253 879.8 509 88.0
Sp6g40070 Schrenkiella parvula HOM05D005843 ORTHO05D007781 1.9e-247 859.0 511 86.5
Thhalv10013300m.g Eutrema salsugineum HOM05D005843 ORTHO05D007781 1.2e-243 846.3 511 84.1
BcaC06g31988 Brassica carinata HOM05D005843 ORTHO05D007781 2.2e-240 835.5 511 85.3
C09p74160 Brassica napus HOM05D005843 ORTHO05D007781 6.6e-237 823.9 486 87.2
Carub.0006s0120 Capsella rubella HOM05D005843 ORTHO05D007781 3.3e-236 821.6 511 82.2
AL6G11640 Arabidopsis lyrata HOM05D005843 ORTHO05D007781 2.6e-233 812.0 495 83.2
AT5G02410 Arabidopsis thaliana HOM05D005843 ORTHO05D007781 1.7e-232 809.3 511 80.8
CARHR211000 Cardamine hirsuta HOM05D005843 ORTHO05D007781 6.4e-232 807.4 511 79.3
Aa31LG1G22390 Aethionema arabicum HOM05D005843 ORTHO05D007781 1.9e-212 742.7 580 67.9
THA.LOC104809903 Tarenaya hassleriana HOM05D005843 ORTHO05D007781 4.6e-198 694.9 510 71.6
Atru.chr8.1969 Acer truncatum HOM05D005843 ORTHO05D007781 1.3e-184 650.2 519 64.7
Thecc.05G040300 Theobroma cacao HOM05D005843 ORTHO05D007781 3.1e-178 629.0 516 63.8
GSVIVG01034179001 Vitis vinifera HOM05D005843 ORTHO05D007781 2.6e-177 625.9 519 61.8
CiPaw.09G192200 Carya illinoinensis HOM05D005843 ORTHO05D007781 1.7e-176 623.2 517 61.9
QL06p005681 Quercus lobata HOM05D005843 ORTHO05D007781 8.5e-176 620.9 513 63.2
Duzib128G1977 Durio zibethinus HOM05D005843 ORTHO05D007781 1.9e-175 619.8 535 62.1
Cpa.g.sc332.7 Carica papaya HOM05D005843 ORTHO05D007781 5.5e-175 618.2 511 62.4
Haze_20785 Corylus avellana HOM05D005843 ORTHO05D007781 9.4e-175 617.5 531 61.6
Sc20g0004950 Simmondsia chinensis HOM05D005843 ORTHO05D007781 2.3e-173 612.8 518 59.7
Gohir.A09G156300 Gossypium hirsutum HOM05D005843 ORTHO05D007781 6.7e-173 611.3 517 60.5
Gorai.006G173000 Gossypium raimondii HOM05D005843 ORTHO05D007781 2.0e-172 609.8 517 60.7
ECA238G1173 Erigeron canadensis HOM05D005843 ORTHO05D007781 4.4e-172 608.6 512 58.4
Gohir.D09G151700 Gossypium hirsutum HOM05D005843 ORTHO05D007781 5.7e-172 608.2 517 60.5
TWI38G1602 Tripterygium wilfordii HOM05D005843 ORTHO05D007781 2.2e-171 606.3 517 60.7
Manes.17G047400 Manihot esculenta HOM05D005843 ORTHO05D007781 3.7e-171 605.5 519 59.5
Medtr7g060680 Medicago truncatula HOM05D005843 ORTHO05D007781 4.8e-171 605.1 514 59.5
Ca_26026_v3 Cicer arietinum L. HOM05D005843 ORTHO05D007781 1.1e-170 604.0 511 59.9
Oeu024347.1 Olea europaea HOM05D005843 ORTHO05D007781 1.1e-170 604.0 516 59.9
RcHm_v2.0_Chr3g0466751 Rosa chinensis HOM05D005843 ORTHO05D007781 7.0e-170 601.3 514 61.5
Eucgr.K03141 Eucalyptus grandis HOM05D005843 ORTHO05D007781 9.1e-170 600.9 513 59.1
Prupe.6G254200 Prunus persica HOM05D005843 ORTHO05D007781 9.1e-170 600.9 518 62.0
FAN14G2296 Fragaria x ananassa HOM05D005843 ORTHO05D007781 1.2e-169 600.5 516 60.9
TAR633G1568 Trochodendron aralioides HOM05D005843 ORTHO05D007781 1.2e-169 600.5 517 60.2
QL11p021821 Quercus lobata HOM05D005843 ORTHO05D007781 1.6e-169 600.1 559 56.0
Hma1.2p1_1513F.1_g288040 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 2.0e-169 599.7 512 60.2
Glyma.07G131100 Glycine max HOM05D005843 ORTHO05D007781 2.7e-169 599.4 513 58.5
PSO339G2649 Papaver somniferum HOM05D005843 ORTHO05D007781 2.7e-169 599.4 518 60.4
FAN05G5617 Fragaria x ananassa HOM05D005843 ORTHO05D007781 3.5e-169 599.0 516 60.7
TPR.G23290 Trifolium pratense HOM05D005843 ORTHO05D007781 3.5e-169 599.0 512 59.6
MELO3C003129.2 Cucumis melo HOM05D005843 ORTHO05D007781 7.7e-169 597.8 523 59.1
PSO151G0180 Papaver somniferum HOM05D005843 ORTHO05D007781 1.7e-168 596.7 516 59.5
DCAR_014847 Daucus carota HOM05D005843 ORTHO05D007781 2.9e-168 595.9 517 58.6
CsaV3_4G024980 Cucumis sativus L. HOM05D005843 ORTHO05D007781 3.2e-167 592.4 516 59.7
Cc06_g02690 Coffea canephora HOM05D005843 ORTHO05D007781 5.5e-167 591.7 513 57.9
Rhsim05G0192300 Rhododendron simsii HOM05D005843 ORTHO05D007781 9.4e-167 590.9 516 59.1
Lj3C968G10 Lonicera japonica HOM05D005843 ORTHO05D007781 2.7e-166 589.3 554 56.7
Lalb_Chr19g0125371 Lupinus albus HOM05D005843 ORTHO05D007781 3.6e-166 589.0 515 59.0
EL10Ac3g07255 Beta vulgaris HOM05D005843 ORTHO05D007781 8.0e-166 587.8 518 59.5
PGR004G0455 Punica granatum HOM05D005843 ORTHO05D007781 3.0e-165 585.9 520 58.5
MD12G1140900 Malus domestica HOM05D005843 ORTHO05D007781 5.2e-165 585.1 517 59.6
Hund24578 Selenicereus undatus HOM05D005843 ORTHO05D007781 8.8e-165 584.3 514 58.0
CAN.G326.14 Capsicum annuum HOM05D005843 ORTHO05D007781 2.0e-164 583.2 519 57.8
VMungo1383G2898 Vigna mungo HOM05D005843 ORTHO05D007781 2.6e-164 582.8 514 58.9
Nn8g39667 Nelumbo nucifera HOM05D005843 ORTHO05D007781 9.8e-164 580.9 515 58.3
Nitab4.5_0001190g0070 Nicotiana tabacum HOM05D005843 ORTHO05D007781 1.7e-163 580.1 515 58.1
PGSC0003DMG400008911 Solanum tuberosum HOM05D005843 ORTHO05D007781 4.8e-163 578.6 521 57.6
CANSAT35G1785 Cannabis sativa HOM05D005843 ORTHO05D007781 1.2e-161 573.9 525 58.3
Phvul.008G100900 Phaseolus vulgaris HOM05D005843 ORTHO05D007781 1.2e-161 573.9 513 58.7
ClCG04G008190 Citrullus lanatus HOM05D005843 ORTHO05D007781 2.7e-161 572.8 520 58.1
MD04G1127500 Malus domestica HOM05D005843 ORTHO05D007781 4.5e-161 572.0 516 58.3
Psat5g101400 Pisum sativum HOM05D005843 ORTHO05D007781 5.9e-161 571.6 513 56.9
Sopen09g005490 Solanum pennellii HOM05D005843 ORTHO05D007781 7.7e-161 571.2 521 56.0
arahy.Tifrunner.gnm1.ann1.JAB43P Arachis hypogaea HOM05D005843 ORTHO05D007781 1.0e-160 570.9 515 57.3
Sed0019468 Sechium edule HOM05D005843 ORTHO05D007781 5.5e-159 565.1 489 60.1
Migut.J00332 Erythranthe guttata HOM05D005843 ORTHO05D007781 1.2e-158 563.9 516 57.2
SalBow3G1829 Salvia bowleyana HOM05D005843 ORTHO05D007781 3.6e-158 562.4 513 55.4
Aqoxy6G01388 Aquilegia oxysepala HOM05D005843 ORTHO05D007781 6.8e-157 558.1 513 55.4
Peaxi162Scf00165g01322 Petunia axillaris HOM05D005843 ORTHO05D007781 3.4e-156 555.8 552 53.6
HanXRQChr16g0515781 Helianthus annuus HOM05D005843 ORTHO05D007781 9.8e-156 554.3 494 55.9
Solyc09g010770.3 Solanum lycopersicum HOM05D005843 ORTHO05D007781 9.8e-156 554.3 510 55.3
FAN02G2362 Fragaria x ananassa HOM05D005843 ORTHO05D007781 1.1e-154 550.8 547 55.2
Lsat_1_v5_gn_2_17401 Lactuca sativa HOM05D005843 ORTHO05D007781 1.1e-154 550.8 504 54.4
FAN09G3893 Fragaria x ananassa HOM05D005843 ORTHO05D007781 1.6e-153 547.0 526 56.5
SGA_v2.0_scaffold75G24948 Striga asiatica HOM05D005843 ORTHO05D007781 7.8e-153 544.7 517 55.5
HPP92_000805 Vanilla planifolia HOM05D005843 ORTHO05D007781 4.3e-151 538.9 516 54.7
AUR62030297 Chenopodium quinoa HOM05D005843 ORTHO05D007781 5.2e-149 531.9 598 50.7
Hma1.2p1_1513F.1_g288030 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 3.2e-146 522.7 463 59.0
CSS0035027 Camellia sinensis var. sinensis HOM05D005843 ORTHO05D007781 4.1e-146 522.3 461 60.3
Glyma.18G179500 Glycine max HOM05D005843 ORTHO05D007781 6.0e-145 518.5 517 54.2
Actinidia26464 Actinidia chinensis HOM05D005843 ORTHO05D000250 8.0e-142 508.1 460 57.6
Dinv35609 Davidia involucrata HOM05D005843 ORTHO05D007781 4.0e-141 505.8 425 61.9
Sabra06G0064400 Salix brachista HOM05D005843 ORTHO05D007781 4.6e-137 492.3 519 54.5
SHI00339 Sapria himalayana HOM05D005843 ORTHO05D007781 6.6e-136 488.4 538 49.3
AUR62015928 Chenopodium quinoa HOM05D005843 ORTHO05D007781 5.8e-132 475.3 509 51.7
Lj3g0024665 Lotus japonicus HOM05D005843 ORTHO05D007781 2.4e-130 469.9 456 54.8
Pp3c4_12410 Physcomitrium patens HOM05D005843 ORTHO05D007781 2.4e-125 453.4 521 47.4
unitig_26.g9195 Utricularia gibba HOM05D005843 ORTHO05D007781 1.2e-124 451.1 461 53.1
Os04g0503700 Oryza sativa ssp. japonica HOM05D005843 ORTHO05D007781 6.0e-121 438.7 473 49.0
BcaC06g31987 Brassica carinata HOM05D005843 ORTHO05D007781 6.6e-120 435.3 319 75.9
BcaNung05921 Brassica carinata HOM05D002515 ORTHO05D002722 5.8e-116 422.2 368 66.0
FvH4_6g13910 Fragaria vesca HOM05D005843 ORTHO05D007781 1.4e-114 417.5 379 59.4
arahy.Tifrunner.gnm1.ann1.HAEF8J Arachis hypogaea HOM05D005843 ORTHO05D007781 3.5e-113 412.9 389 55.8
SMO137G0039 Selaginella moellendorffii HOM05D005843 ORTHO05D007781 1.6e-110 404.1 524 44.3
A03p00710 Brassica napus HOM05D005843 ORTHO05D007781 7.1e-106 388.7 196 100.0
Mapoly0047s0019 Marchantia polymorpha HOM05D005843 ORTHO05D007781 4.6e-105 386.0 529 42.5
Dinv37176 Davidia involucrata HOM05D005843 ORTHO05D007781 1.1e-98 364.8 342 55.6
AUR62018365 Chenopodium quinoa HOM05D005843 ORTHO05D007781 3.4e-92 343.2 383 51.4
vmacro20152 Vaccinium macrocarpon HOM05D005843 ORTHO05D007781 7.9e-89 332.0 445 46.3
ATR0585G056 Amborella trichopoda HOM05D005843 ORTHO05D007781 1.3e-88 331.3 389 47.0
CDE09G0345 Ceratophyllum demersum HOM05D005843 ORTHO05D007781 5.7e-87 325.9 461 42.7
Potri.006G084800 Populus trichocarpa HOM05D005843 ORTHO05D007781 5.3e-85 319.3 330 55.2
Zm00001eb078080 Zea mays HOM05D005843 ORTHO05D007781 3.7e-78 296.6 343 46.1
Nitab4.5_0002018g0090 Nicotiana tabacum HOM05D005843 ORTHO05D007781 1.4e-74 284.6 259 59.1
AagrBONN_evm.TU.Sc2ySwM_117.1914 Anthoceros agrestis HOM05D005843 ORTHO05D007781 2.6e-68 263.8 452 36.5
SGA_v2.0_scaffold75G24944 Striga asiatica HOM05D005843 ORTHO05D007781 3.1e-61 240.4 434 38.2
CBR_g29861 Chara braunii HOM05D005843 ORTHO05D000002 1.5e-58 231.5 361 38.5
Cre01.g041300 Chlamydomonas reinhardtii HOM05D005843 ORTHO05D007781 1.2e-52 211.8 533 30.6
TAR636G2087 Trochodendron aralioides HOM05D005843 ORTHO05D007781 5.0e-51 206.5 168 58.9
VMungo1309G2290 Vigna mungo HOM05D005843 ORTHO05D007781 9.5e-42 175.6 142 62.0
DCAR_015734 Daucus carota HOM05D005843 ORTHO05D007781 1.4e-40 171.8 136 61.0
TAR636G1000 Trochodendron aralioides HOM05D005843 ORTHO05D007781 2.0e-36 157.9 126 61.1
TAR636G1324 Trochodendron aralioides HOM05D005843 ORTHO05D007781 2.0e-36 157.9 126 61.1
Haze_26583 Corylus avellana HOM05D005843 ORTHO05D007781 2.3e-32 144.4 500 27.8
AUR62040681 Chenopodium quinoa HOM05D005843 ORTHO05D007781 1.9e-29 134.8 192 41.1
C03p92170 Brassica napus HOM05D005843 ORTHO05D040940 6.0e-28 129.8 67 92.5
BolC3t21533H Brassica oleracea HOM05D005843 ORTHO05D040940 6.0e-28 129.8 67 92.5
BraA10t45356Z Brassica rapa HOM05D005843 ORTHO05D007781 1.9e-26 124.8 65 84.6
DCAR_015735 Daucus carota HOM05D005843 ORTHO05D007781 1.1e-21 109.0 60 81.7
SEGI_06123 Sequoiadendron giganteum HOM05D005843 ORTHO05D007781 1.1e-21 109.0 116 46.6
TAR636G3605 Trochodendron aralioides HOM05D005843 ORTHO05D007781 1.5e-18 98.6 92 53.3
VMungo1309G1664 Vigna mungo HOM05D005843 ORTHO05D007781 5.6e-18 96.7 218 33.9
Hma1.2p1_1611F.1_g293520 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 6.2e-17 93.2 52 78.8
SEGI_08652 Sequoiadendron giganteum HOM05D005843 ORTHO05D000001 1.8e-16 91.7 57 66.7
TAR636G0893 Trochodendron aralioides HOM05D005843 ORTHO05D007781 8.3e-14 82.8 64 60.9
SEGI_16582 Sequoiadendron giganteum HOM05D005843 ORTHO05D014789 1.2e-09 68.9 74 50.0


User provided reference genes

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