Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p44090 Brassica napus HOM05D000754 ORTHO05D000169 7.1e-105 384.0 205 100.0
BraA02t09332Z Brassica rapa HOM05D000754 ORTHO05D000169 7.1e-105 384.0 205 100.0
BolC2t12498H Brassica oleracea HOM05D000754 ORTHO05D000169 3.3e-94 348.6 205 92.2
Sp2g28950 Schrenkiella parvula HOM05D000754 ORTHO05D000169 2.1e-72 276.2 205 72.2
Carub.0008s2675 Capsella rubella HOM05D000754 ORTHO05D000169 1.8e-60 236.5 197 59.9
BcaC03g18357 Brassica carinata HOM05D000754 ORTHO05D000169 4.1e-60 235.3 205 65.4
AL334U10020 Arabidopsis lyrata HOM05D000754 ORTHO05D000169 2.2e-58 229.6 199 59.3
C02p64350 Brassica napus HOM05D000754 ORTHO05D000169 7.2e-57 224.6 137 93.4
BcaC01g02827 Brassica carinata HOM05D000754 ORTHO05D000169 1.1e-54 217.2 203 64.0
BcaB02g09902 Brassica carinata HOM05D000754 ORTHO05D000169 5.3e-52 208.4 205 61.0
AL8G43580 Arabidopsis lyrata HOM05D000754 ORTHO05D000169 1.2e-51 207.2 189 57.1
BraA06t26200Z Brassica rapa HOM05D005117 ORTHO05D005956 3.4e-51 205.7 180 66.7
CARHR279860 Cardamine hirsuta HOM05D000754 ORTHO05D000169 1.0e-47 194.1 190 55.3
Thhalv10005352m.g Eutrema salsugineum HOM05D000754 ORTHO05D000169 2.0e-46 189.9 183 56.3
A06p32710 Brassica napus HOM05D005117 ORTHO05D005956 7.4e-46 188.0 198 57.1
THA.LOC104827731 Tarenaya hassleriana HOM05D000754 ORTHO05D000169 7.2e-41 171.4 205 49.3
C03p59810 Brassica napus HOM05D000754 ORTHO05D000169 3.6e-40 169.1 170 54.1
BolC3t18244H Brassica oleracea HOM05D000754 ORTHO05D000169 3.6e-40 169.1 170 54.1
Carub.0005s1612 Capsella rubella HOM05D000754 ORTHO05D000169 1.4e-31 140.6 207 42.5
C01p30640 Brassica napus HOM05D000754 ORTHO05D000169 2.0e-30 136.7 210 42.9
Aa31LG4G18250 Aethionema arabicum HOM05D000754 ORTHO05D000169 2.6e-30 136.3 205 41.5
BcaB05g23150 Brassica carinata HOM05D000754 ORTHO05D000169 3.3e-30 136.0 205 42.9
THA.LOC104819272 Tarenaya hassleriana HOM05D000754 ORTHO05D000169 2.2e-29 133.3 206 43.2
BcaB01g00675 Brassica carinata HOM05D000754 ORTHO05D000169 4.8e-29 132.1 204 42.6
BraA09t39758Z Brassica rapa HOM05D000754 ORTHO05D000169 9.1e-28 127.9 204 38.2
BcaC09g49969 Brassica carinata HOM05D000754 ORTHO05D000169 2.0e-27 126.7 205 41.5
A09p42900 Brassica napus HOM05D000754 ORTHO05D000169 2.7e-27 126.3 204 38.7
Thhalv10010997m.g Eutrema salsugineum HOM05D000754 ORTHO05D000169 6.5e-26 121.7 169 43.2
BcaC07g39440 Brassica carinata HOM05D000754 ORTHO05D000169 4.2e-25 119.0 196 39.3
C08p24780 Brassica napus HOM05D000754 ORTHO05D000169 4.2e-25 119.0 196 39.3
Sp5g12320 Schrenkiella parvula HOM05D000754 ORTHO05D000169 4.2e-25 119.0 189 41.3
BolC8t50093H Brassica oleracea HOM05D000754 ORTHO05D000169 1.6e-24 117.1 196 38.8
AT3G49760 Arabidopsis thaliana HOM05D000754 ORTHO05D000169 6.8e-23 111.7 173 41.6
Cpa.g.sc129.74 Carica papaya HOM05D000754 ORTHO05D000169 6.8e-23 111.7 216 36.6
TWI74G1229 Tripterygium wilfordii HOM05D000754 ORTHO05D000169 1.2e-22 110.9 191 39.3
CARHR158850 Cardamine hirsuta HOM05D000754 ORTHO05D000169 3.4e-22 109.4 178 41.0
BolC1t03000H Brassica oleracea HOM05D000754 ORTHO05D000169 6.3e-21 105.1 175 40.6
Duzib264G0179 Durio zibethinus HOM05D000754 ORTHO05D000169 1.6e-19 100.5 200 36.0
Ciclev10027584m.g Citrus clementina HOM05D000754 ORTHO05D000169 2.7e-19 99.8 192 34.9
Sp7g35380 Schrenkiella parvula HOM05D000754 ORTHO05D000169 2.7e-19 99.8 256 32.8
Thhalv10027117m.g Eutrema salsugineum HOM05D000754 ORTHO05D000169 3.5e-19 99.4 253 31.6
COL.COLO4_11611 Corchorus olitorius HOM05D000754 ORTHO05D000169 4.5e-19 99.0 200 34.0
Gohir.A11G048900 Gossypium hirsutum HOM05D000754 ORTHO05D000169 1.3e-18 97.4 201 34.3
Gohir.D11G052500 Gossypium hirsutum HOM05D000754 ORTHO05D000169 1.3e-18 97.4 201 34.8
Duzib147G0338 Durio zibethinus HOM05D000754 ORTHO05D000169 1.7e-18 97.1 192 33.9
Gorai.007G056900 Gossypium raimondii HOM05D000754 ORTHO05D000169 1.7e-18 97.1 201 34.8
Manes.13G109400 Manihot esculenta HOM05D000754 ORTHO05D000169 1.7e-18 97.1 195 32.3
Lsat_1_v5_gn_2_80220 Lactuca sativa HOM05D000754 ORTHO05D000169 2.9e-18 96.3 183 35.0
Gohir.D03G030500 Gossypium hirsutum HOM05D000754 ORTHO05D000169 3.8e-18 95.9 200 34.0
Gorai.003G032100 Gossypium raimondii HOM05D000754 ORTHO05D000169 5.0e-18 95.5 200 34.0
Potri.014G007100 Populus trichocarpa HOM05D000754 ORTHO05D000169 1.9e-17 93.6 202 32.2
Thecc.01G075900 Theobroma cacao HOM05D000754 ORTHO05D000169 1.9e-17 93.6 200 32.5
A01p01320 Brassica napus HOM05D000754 ORTHO05D000169 2.5e-17 93.2 232 31.9
BraA01t00129Z Brassica rapa HOM05D000754 ORTHO05D000169 2.5e-17 93.2 232 31.9
FAN26G0075 Fragaria x ananassa HOM05D000754 ORTHO05D000169 2.5e-17 93.2 179 37.4
Atru.chr3.1056 Acer truncatum HOM05D000754 ORTHO05D000169 3.2e-17 92.8 192 31.8
Gohir.A02G149900 Gossypium hirsutum HOM05D000754 ORTHO05D000169 3.2e-17 92.8 197 33.5
FAN19G0912 Fragaria x ananassa HOM05D000754 ORTHO05D000169 7.2e-17 91.7 181 38.7
QL06p038974 Quercus lobata HOM05D000754 ORTHO05D000169 7.2e-17 91.7 196 32.1
Duzib187G1715 Durio zibethinus HOM05D000754 ORTHO05D000169 9.5e-17 91.3 200 34.5
Hma1.2p1_1139F.1_g260890 Hydrangea macrophylla HOM05D000754 ORTHO05D000169 9.5e-17 91.3 192 34.4
CARHR246120 Cardamine hirsuta HOM05D000754 ORTHO05D000169 1.2e-16 90.9 242 31.4
Carub.0007s0252 Capsella rubella HOM05D000754 ORTHO05D000169 1.6e-16 90.5 246 33.3
BcaC06g33372 Brassica carinata HOM05D000754 ORTHO05D000169 2.1e-16 90.1 251 28.7
Potri.007G006900 Populus trichocarpa HOM05D000754 ORTHO05D000169 2.8e-16 89.7 178 36.0
C01p01480 Brassica napus HOM05D000754 ORTHO05D000169 3.6e-16 89.4 229 31.0
A03p65530 Brassica napus HOM05D000754 ORTHO05D000169 4.7e-16 89.0 251 29.1
FAN28G2566 Fragaria x ananassa HOM05D000754 ORTHO05D000169 6.1e-16 88.6 177 35.6
Prupe.6G217300 Prunus persica HOM05D000754 ORTHO05D000169 6.1e-16 88.6 195 33.8
C07p62610 Brassica napus HOM05D000754 ORTHO05D000169 8.0e-16 88.2 251 28.3
MD02G1189300 Malus domestica HOM05D000754 ORTHO05D000169 8.0e-16 88.2 192 34.9
Gohir.D12G076700 Gossypium hirsutum HOM05D000754 ORTHO05D000169 1.0e-15 87.8 201 31.3
Lj4P165T20 Lonicera japonica HOM05D000754 ORTHO05D000169 1.0e-15 87.8 103 45.6
CARHR114160 Cardamine hirsuta HOM05D000754 ORTHO05D000169 2.3e-15 86.7 216 31.0
DCAR_010801 Daucus carota HOM05D000754 ORTHO05D000169 4.0e-15 85.9 188 31.9
FAN23G2905 Fragaria x ananassa HOM05D000754 ORTHO05D000169 4.0e-15 85.9 174 36.2
Gohir.A12G080000 Gossypium hirsutum HOM05D000754 ORTHO05D000169 4.0e-15 85.9 170 34.7
AT4G37730 Arabidopsis thaliana HOM05D000754 ORTHO05D000169 6.8e-15 85.1 246 28.9
Cc07_g07330 Coffea canephora HOM05D000754 ORTHO05D000169 6.8e-15 85.1 96 46.9
AL7G12950 Arabidopsis lyrata HOM05D000754 ORTHO05D000169 1.2e-14 84.3 246 30.5
Gohir.D12G076600 Gossypium hirsutum HOM05D000754 ORTHO05D000169 2.0e-14 83.6 186 32.8
Phvul.002G009200 Phaseolus vulgaris HOM05D000754 ORTHO05D000169 2.0e-14 83.6 184 33.2
RcHm_v2.0_Chr2g0108691 Rosa chinensis HOM05D000754 ORTHO05D000169 2.0e-14 83.6 119 41.2
BolC1t00145H Brassica oleracea HOM05D000754 ORTHO05D000169 4.4e-14 82.4 229 30.1
Glyma.05G108200 Glycine max HOM05D000754 ORTHO05D000169 4.4e-14 82.4 174 32.2
Gorai.008G085300 Gossypium raimondii HOM05D000754 ORTHO05D000169 4.4e-14 82.4 113 38.9
Lj4g0006564 Lotus japonicus HOM05D000754 ORTHO05D000169 7.5e-14 81.6 188 32.4
Oeu013337.1 Olea europaea HOM05D000754 ORTHO05D000169 7.5e-14 81.6 211 29.9
Oeu032433.1 Olea europaea HOM05D000754 ORTHO05D000169 7.5e-14 81.6 183 31.7
Phvul.003G233200 Phaseolus vulgaris HOM05D000754 ORTHO05D000169 7.5e-14 81.6 185 30.8
Sp4g01890 Schrenkiella parvula HOM05D000754 ORTHO05D000169 7.5e-14 81.6 215 29.8
SpUn0042_0040 Schrenkiella parvula HOM05D000754 ORTHO05D000169 7.5e-14 81.6 215 29.8
Lj7P112T12 Lonicera japonica HOM05D000754 ORTHO05D000169 9.8e-14 81.3 114 39.5
CSS0034114 Camellia sinensis var. sinensis HOM05D000754 ORTHO05D000169 1.7e-13 80.5 134 39.6
Gorai.008G085200 Gossypium raimondii HOM05D000754 ORTHO05D000169 1.7e-13 80.5 186 30.6
Sabra14G0006500 Salix brachista HOM05D000754 ORTHO05D000169 1.7e-13 80.5 182 32.4
Gohir.A12G078400 Gossypium hirsutum HOM05D000754 ORTHO05D000169 2.2e-13 80.1 180 31.7
MD15G1300200 Malus domestica HOM05D000754 ORTHO05D000169 2.2e-13 80.1 213 31.5
Aa31LG6G14610 Aethionema arabicum HOM05D000754 ORTHO05D000169 3.7e-13 79.3 220 31.8
CANSAT01G0483 Cannabis sativa HOM05D000754 ORTHO05D000169 4.9e-13 79.0 191 30.4
Hma1.2p1_0424F.1_g150490 Hydrangea macrophylla HOM05D000754 ORTHO05D000169 4.9e-13 79.0 176 33.0
Manes.12G117300 Manihot esculenta HOM05D000754 ORTHO05D000169 4.9e-13 79.0 108 41.7
Glyma.17G158900 Glycine max HOM05D000754 ORTHO05D000169 6.3e-13 78.6 175 29.1
THA.LOC104804197 Tarenaya hassleriana HOM05D000754 ORTHO05D000169 6.3e-13 78.6 124 37.1
Lsat_1_v5_gn_3_86301 Lactuca sativa HOM05D000754 ORTHO05D000169 1.8e-12 77.0 113 38.9
Psat0ss26165g0040 Pisum sativum HOM05D000754 ORTHO05D000169 1.8e-12 77.0 182 30.2
Aqoxy6G02482 Aquilegia oxysepala HOM05D000754 ORTHO05D000169 2.4e-12 76.6 154 32.5
CiPaw.01G002300 Carya illinoinensis HOM05D000754 ORTHO05D000169 3.1e-12 76.3 113 38.9
AL4G12430 Arabidopsis lyrata HOM05D000754 ORTHO05D000169 4.1e-12 75.9 218 30.3
TPR.G3728 Trifolium pratense HOM05D000754 ORTHO05D000169 5.4e-12 75.5 189 30.2
VMungo0251G0820 Vigna mungo HOM05D000754 ORTHO05D000169 5.4e-12 75.5 186 30.6
CSS0026493 Camellia sinensis var. sinensis HOM05D000754 ORTHO05D000169 7.0e-12 75.1 89 43.8
PGR004G2429 Punica granatum HOM05D000754 ORTHO05D000169 7.0e-12 75.1 96 43.8
HanXRQChr14g0445391 Helianthus annuus HOM05D000754 ORTHO05D000169 1.2e-11 74.3 168 32.7
Lalb_Chr09g0323741 Lupinus albus HOM05D000754 ORTHO05D000169 1.2e-11 74.3 177 30.5
TAR628G1392 Trochodendron aralioides HOM05D000754 ORTHO05D000169 1.2e-11 74.3 113 36.3
CSS0007195 Camellia sinensis var. sinensis HOM05D000754 ORTHO05D000169 1.6e-11 73.9 89 42.7
DCAR_025821 Daucus carota HOM05D000754 ORTHO05D000169 1.6e-11 73.9 165 31.5
HanXRQChr12g0376421 Helianthus annuus HOM05D000754 ORTHO05D000169 1.6e-11 73.9 115 40.9
MBI16_g45152_MAGBIO Magnolia biondii HOM05D000754 ORTHO05D000169 2.0e-11 73.6 88 43.2
Medtr4g097440 Medicago truncatula HOM05D000754 ORTHO05D000169 2.7e-11 73.2 190 30.5
Eucgr.H02330 Eucalyptus grandis HOM05D000754 ORTHO05D000169 3.5e-11 72.8 165 32.1
Thhalv10000309m.g Eutrema salsugineum HOM05D000754 ORTHO05D000169 3.5e-11 72.8 234 25.6
Dinv26956 Davidia involucrata HOM05D000754 ORTHO05D000169 7.8e-11 71.6 108 38.9
Rhsim08G0091200 Rhododendron simsii HOM05D000754 ORTHO05D000169 7.8e-11 71.6 156 33.3
arahy.Tifrunner.gnm1.ann1.JTRU7S Arachis hypogaea HOM05D000754 ORTHO05D000169 1.0e-10 71.2 103 39.8
CsaV3_6G044300 Cucumis sativus L. HOM05D000754 ORTHO05D000169 1.0e-10 71.2 146 32.9
AT2G22850 Arabidopsis thaliana HOM05D000754 ORTHO05D000169 1.7e-10 70.5 214 29.4
Migut.H00326 Erythranthe guttata HOM05D000754 ORTHO05D000169 1.7e-10 70.5 192 31.2
vmacro18014 Vaccinium macrocarpon HOM05D000754 ORTHO05D000169 1.7e-10 70.5 94 42.6
vmacro23300 Vaccinium macrocarpon HOM05D000754 ORTHO05D000169 1.7e-10 70.5 94 42.6
VMungo1215G0337 Vigna mungo HOM05D000754 ORTHO05D000169 1.7e-10 70.5 81 44.4
Cfa004385 Carpinus fangiana HOM05D000754 ORTHO05D000169 2.3e-10 70.1 104 36.5
Rhsim08G0090600 Rhododendron simsii HOM05D000754 ORTHO05D000169 2.3e-10 70.1 156 33.3
MELO3C007655.2 Cucumis melo HOM05D000754 ORTHO05D000169 2.9e-10 69.7 151 32.5
Glyma.11G045900 Glycine max HOM05D000754 ORTHO05D000169 2.9e-10 69.7 169 28.4
Glyma.01G195800 Glycine max HOM05D000754 ORTHO05D000169 5.0e-10 68.9 169 30.2
arahy.Tifrunner.gnm1.ann1.449CV2 Arachis hypogaea HOM05D000754 ORTHO05D000169 6.6e-10 68.6 103 38.8
Nn5g30657 Nelumbo nucifera HOM05D000754 ORTHO05D000169 1.1e-09 67.8 92 40.2
BcaNung05788 Brassica carinata HOM05D000754 ORTHO05D000169 2.5e-09 66.6 249 26.9
Medtr5g015090 Medicago truncatula HOM05D000754 ORTHO05D000169 3.3e-09 66.2 167 26.9
Psat2g172480 Pisum sativum HOM05D000754 ORTHO05D000169 5.6e-09 65.5 93 37.6
HPP92_007710 Vanilla planifolia HOM05D000754 ORTHO05D000169 5.6e-09 65.5 141 32.6
ClCG01G017780 Citrullus lanatus HOM05D000754 ORTHO05D000169 7.3e-09 65.1 174 28.2
Nitab4.5_0006965g0010 Nicotiana tabacum HOM05D000754 ORTHO05D000169 7.3e-09 65.1 89 39.3
Nn6g34519 Nelumbo nucifera HOM05D000754 ORTHO05D000169 9.5e-09 64.7 93 37.6
PGSC0003DMG400005476 Solanum tuberosum HOM05D000697 ORTHO05D000169 9.5e-09 64.7 195 27.2
TAR376G1084 Trochodendron aralioides HOM05D000754 ORTHO05D000169 1.2e-08 64.3 113 35.4
CDE07G0523 Ceratophyllum demersum HOM05D052845 ORTHO05D043881 1.6e-08 63.9 90 38.9
AUR62004028 Chenopodium quinoa HOM05D000754 ORTHO05D000169 2.1e-08 63.5 113 36.3
Gohir.D01G111266 Gossypium hirsutum HOM05D000754 ORTHO05D000169 2.1e-08 63.5 186 25.8
Lalb_Chr16g0378971 Lupinus albus HOM05D000754 ORTHO05D000169 2.1e-08 63.5 147 30.6
TPR.G9335 Trifolium pratense HOM05D000754 ORTHO05D000169 2.1e-08 63.5 159 28.3
Gorai.002G135900 Gossypium raimondii HOM05D000754 ORTHO05D000169 2.8e-08 63.2 186 26.3
Gohir.A01G123450 Gossypium hirsutum HOM05D000754 ORTHO05D000169 6.1e-08 62.0 182 27.5
Hma1.2p1_1170F.1_g263430 Hydrangea macrophylla HOM05D000754 ORTHO05D000169 8.0e-08 61.6 123 34.1
PGR031G3757 Punica granatum HOM05D000754 ORTHO05D000169 1.0e-07 61.2 161 32.3
Lsat_1_v5_gn_4_159740 Lactuca sativa HOM05D000754 ORTHO05D000169 1.4e-07 60.8 141 34.0
Sopen04g031190 Solanum pennellii HOM05D000754 ORTHO05D000169 1.4e-07 60.8 87 35.6
CAN.G1239.10 Capsicum annuum HOM05D000754 ORTHO05D000169 1.8e-07 60.5 88 38.6
Nitab4.5_0000142g0350 Nicotiana tabacum HOM05D016759 ORTHO05D000169 1.8e-07 60.5 74 41.9
PGSC0003DMG400021431 Solanum tuberosum HOM05D016759 ORTHO05D000169 1.8e-07 60.5 73 42.5
HanXRQChr09g0255311 Helianthus annuus HOM05D000754 ORTHO05D000169 2.3e-07 60.1 166 28.3
SalBow3G0289 Salvia bowleyana HOM05D000754 ORTHO05D000169 2.3e-07 60.1 89 40.4
SGA_v2.0_scaffold15G07496 Striga asiatica HOM05D000754 ORTHO05D000169 2.3e-07 60.1 90 40.0
Carub.0004s0198 Capsella rubella HOM05D000754 ORTHO05D000169 3.0e-07 59.7 215 27.4
Sed0020432 Sechium edule HOM05D000754 ORTHO05D000169 3.0e-07 59.7 169 36.7
Ah.02g125320 Amaranthus hybridus HOM05D000754 ORTHO05D000169 4.0e-07 59.3 139 32.4
Oeu033308.1 Olea europaea HOM05D000754 ORTHO05D000169 4.0e-07 59.3 191 28.3
Sc07g0000450 Simmondsia chinensis HOM05D000754 ORTHO05D000169 4.0e-07 59.3 103 35.9
Sopen02g036670 Solanum pennellii HOM05D016759 ORTHO05D000169 4.0e-07 59.3 72 44.4
Nitab4.5_0001072g0020 Nicotiana tabacum HOM05D016759 ORTHO05D000169 5.2e-07 58.9 71 39.4
Ca_22096_v3 Cicer arietinum L. HOM05D000754 ORTHO05D000169 1.2e-06 57.8 190 32.6
MSTRG.3481 Avicennia marina HOM05D000754 ORTHO05D000169 1.5e-06 57.4 153 30.1
HanXRQChr07g0189251 Helianthus annuus HOM05D000754 ORTHO05D000169 1.5e-06 57.4 102 34.3
Solyc02g092090.3 Solanum lycopersicum HOM05D016759 ORTHO05D000169 2.0e-06 57.0 72 43.1
Cc10_g07580 Coffea canephora HOM05D000754 ORTHO05D000169 3.4e-06 56.2 90 37.8
Gohir.A09G054200 Gossypium hirsutum HOM05D000754 ORTHO05D000169 3.4e-06 56.2 159 27.7
Duzib264G0228 Durio zibethinus HOM05D007433 ORTHO05D000169 5.7e-06 55.5 77 40.3
PSO541G5281 Papaver somniferum HOM05D000754 ORTHO05D000169 5.7e-06 55.5 87 35.6
Aa31LG2G10600 Aethionema arabicum HOM05D000754 ORTHO05D000169 7.5e-06 55.1 86 38.4
PGR102G3091 Punica granatum HOM05D000754 ORTHO05D000169 7.5e-06 55.1 178 36.5
vmacro23468 Vaccinium macrocarpon HOM05D000754 ORTHO05D000169 7.5e-06 55.1 56 51.8
TWI56G1432 Tripterygium wilfordii HOM05D000754 ORTHO05D000169 9.8e-06 54.7 159 28.9


User provided reference genes

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