Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 2.4e-137 492.3 268 100.0
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 1.3e-135 486.5 268 98.9
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 2.4e-121 439.1 273 90.1
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 3.9e-111 405.2 289 82.7
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 1.3e-106 390.2 278 80.2
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 1.8e-100 369.8 278 77.0
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 8.9e-100 367.5 270 78.5
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 2.0e-99 366.3 270 78.1
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 3.4e-99 365.5 276 77.2
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 3.8e-98 362.1 276 76.1
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 8.4e-98 360.9 268 78.0
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 8.4e-98 360.9 268 78.0
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 7.1e-97 357.8 278 75.2
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 9.2e-97 357.5 270 76.3
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 3.8e-90 335.5 279 70.3
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 1.2e-88 330.5 272 72.1
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 6.9e-76 288.1 263 64.6
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 1.3e-53 214.2 259 53.7
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 3.7e-53 212.6 252 54.4
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 2.4e-52 209.9 224 57.1
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 5.3e-52 208.8 249 53.4
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 7.7e-51 204.9 245 51.0
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 1.0e-50 204.5 257 54.1
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 1.7e-50 203.8 255 52.2
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 1.7e-50 203.8 264 51.5
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 2.9e-50 203.0 255 51.8
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 2.9e-50 203.0 255 51.8
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 3.8e-50 202.6 220 55.5
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 5.0e-50 202.2 126 89.7
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 2.5e-49 199.9 264 51.5
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 1.2e-48 197.6 272 47.1
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 1.6e-48 197.2 282 45.4
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 2.7e-48 196.4 254 49.6
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 3.6e-48 196.1 248 49.6
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 6.1e-48 195.3 214 58.4
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 1.8e-47 193.7 276 46.7
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 2.3e-47 193.4 209 56.5
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 3.9e-47 192.6 142 70.4
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 5.1e-47 192.2 206 55.3
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 5.1e-47 192.2 272 48.9
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 6.7e-47 191.8 247 52.6
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 1.5e-46 190.7 232 50.0
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 4.4e-46 189.1 196 58.7
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 4.4e-46 189.1 196 58.7
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 4.4e-46 189.1 236 53.0
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 4.4e-46 189.1 237 50.2
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 4.4e-46 189.1 199 55.8
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 5.7e-46 188.7 209 55.0
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 5.7e-46 188.7 209 55.0
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 5.7e-46 188.7 260 48.8
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 9.7e-46 188.0 200 56.5
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.3e-45 187.6 192 59.9
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 1.3e-45 187.6 241 51.9
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 1.3e-45 187.6 235 49.8
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 2.2e-45 186.8 193 58.0
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 6.3e-45 185.3 232 50.4
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 8.2e-45 184.9 219 52.5
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.1e-44 184.5 226 51.8
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 1.8e-44 183.7 220 55.5
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 1.8e-44 183.7 264 48.5
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 2.4e-44 183.3 234 50.4
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 4.1e-44 182.6 200 56.0
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 7.0e-44 181.8 208 52.9
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 9.1e-44 181.4 196 54.6
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 9.1e-44 181.4 147 68.0
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 1.5e-43 180.6 266 48.9
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 1.5e-43 180.6 198 56.6
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 1.5e-43 180.6 210 54.3
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 5.9e-43 178.7 183 60.1
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 7.7e-43 178.3 264 47.3
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 1.0e-42 177.9 206 53.9
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 1.3e-42 177.6 189 56.6
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 2.9e-42 176.4 257 49.8
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 2.9e-42 176.4 191 56.0
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 1.1e-41 174.5 200 55.5
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 1.4e-41 174.1 203 55.2
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.9e-41 173.7 189 55.6
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 1.9e-41 173.7 191 53.4
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 3.2e-41 172.9 202 55.0
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 3.2e-41 172.9 193 57.0
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 5.5e-41 172.2 212 51.4
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 7.2e-41 171.8 208 52.4
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 7.2e-41 171.8 201 56.2
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.6e-40 170.6 196 53.1
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 2.1e-40 170.2 269 45.0
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 2.7e-40 169.9 259 47.9
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 2.7e-40 169.9 248 48.8
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 3.6e-40 169.5 257 46.3
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 4.7e-40 169.1 200 55.0
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 6.1e-40 168.7 267 45.7
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 8.0e-40 168.3 209 52.2
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 1.0e-39 167.9 219 51.6
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.4e-39 167.5 267 45.3
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 3.0e-39 166.4 187 54.5
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 5.2e-39 165.6 219 51.1
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 2.6e-38 163.3 233 48.1
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 7.4e-38 161.8 204 54.4
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.3e-37 161.0 182 55.5
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 4.8e-37 159.1 141 62.4
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 6.3e-37 158.7 281 41.6
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 8.2e-37 158.3 191 53.4
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 8.2e-37 158.3 248 47.2
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 8.2e-37 158.3 235 48.1
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 2.4e-36 156.8 137 63.5
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 2.4e-36 156.8 97 90.7
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 5.3e-36 155.6 268 42.2
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 5.9e-35 152.1 112 71.4
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 1.3e-34 151.0 214 49.5
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 1.3e-34 151.0 220 49.1
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 5.0e-34 149.1 188 50.0
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 6.5e-34 148.7 233 47.2
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 7.2e-33 145.2 109 71.6
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 7.2e-33 145.2 227 42.7
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 2.1e-32 143.7 163 49.1
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 3.6e-32 142.9 197 49.7
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 8.0e-32 141.7 241 42.3
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 1.0e-31 141.4 272 40.4
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 2.3e-31 140.2 125 63.2
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 3.0e-31 139.8 202 44.6
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 2.6e-30 136.7 184 47.3
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 1.7e-29 134.0 274 37.6
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 1.7e-29 134.0 98 71.4
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 8.3e-29 131.7 194 46.4
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 2.4e-28 130.2 113 64.6
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 9.1e-28 128.3 232 41.4
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 1.2e-27 127.9 174 48.9
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 5.9e-27 125.6 106 61.3
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 5.9e-27 125.6 135 57.0
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 2.7e-24 116.7 148 50.0
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 1.8e-23 114.0 136 52.2
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 4.8e-21 105.9 175 42.3
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.1e-20 104.8 100 56.0
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.4e-20 103.6 92 63.0
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.1e-17 94.7 131 47.3
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 1.0e-15 88.2 153 38.6
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 1.4e-15 87.8 121 43.0
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 2.3e-15 87.0 137 36.5
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 1.2e-14 84.7 66 69.7
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 2.0e-14 84.0 60 75.0
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 3.4e-14 83.2 75 61.3
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 1.1e-12 78.2 97 44.3
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 2.4e-12 77.0 139 42.4
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 2.4e-12 77.0 122 41.0
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 2.4e-12 77.0 84 50.0
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 6.6e-10 68.9 90 51.1
CiPaw.02G062100 Carya illinoinensis HOM05D005154 ORTHO05D006270 4.3e-09 66.2 46 76.1
MBI02_g48054_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 7.3e-09 65.5 49 75.5


User provided reference genes

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