Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p43400 Brassica napus HOM05D005900 ORTHO05D007306 5.0e-103 377.9 201 100.0
BraA02t09265Z Brassica rapa HOM05D005900 ORTHO05D007306 1.1e-102 376.7 201 99.5
C02p63500 Brassica napus HOM05D005900 ORTHO05D007306 4.6e-101 371.3 201 97.5
BcaC03g18270 Brassica carinata HOM05D005900 ORTHO05D007306 1.8e-100 369.4 201 97.5
BolC2t12415H Brassica oleracea HOM05D005900 ORTHO05D007306 1.1e-97 360.1 202 95.0
BcaB07g29751 Brassica carinata HOM05D005900 ORTHO05D007306 1.5e-83 313.2 208 86.1
BcaC08g46818 Brassica carinata HOM05D005900 ORTHO05D007306 4.1e-73 278.5 146 97.9
BolC6t39862H Brassica oleracea HOM05D005900 ORTHO05D007306 2.0e-72 276.2 146 97.3
Sp2g27740 Schrenkiella parvula HOM05D005900 ORTHO05D007306 5.5e-70 268.1 213 72.8
C03p61480 Brassica napus HOM05D005900 ORTHO05D007306 8.0e-69 264.2 213 77.0
Thhalv10004934m.g Eutrema salsugineum HOM05D005900 ORTHO05D007306 8.0e-61 237.7 213 68.1
Aa31LG1G17260 Aethionema arabicum HOM05D005900 ORTHO05D007306 8.3e-58 227.6 212 61.8
BcaB04g19984 Brassica carinata HOM05D005900 ORTHO05D007306 1.9e-49 199.9 205 62.0
THA.LOC104799437 Tarenaya hassleriana HOM05D005900 ORTHO05D007306 1.9e-49 199.9 208 57.2
AL8G42100 Arabidopsis lyrata HOM05D005900 ORTHO05D007306 2.2e-42 176.4 206 53.9
BcaC01g02700 Brassica carinata HOM05D005900 ORTHO05D007306 1.9e-41 173.3 215 59.1
AT5G64680 Arabidopsis thaliana HOM05D005900 ORTHO05D007306 1.5e-38 163.7 177 53.7
Cpa.g.sc36.199 Carica papaya HOM05D005900 ORTHO05D007306 6.8e-36 154.8 196 50.0
Carub.0008s2548 Capsella rubella HOM05D005900 ORTHO05D007306 1.3e-34 150.6 186 51.1
CARHR278660 Cardamine hirsuta HOM05D005900 ORTHO05D007306 5.1e-31 138.7 209 45.9
Gorai.002G021100 Gossypium raimondii HOM05D005900 ORTHO05D007306 7.3e-30 134.8 220 45.9
COL.COLO4_27171 Corchorus olitorius HOM05D005900 ORTHO05D007306 9.5e-30 134.4 235 45.1
DCAR_030841 Daucus carota HOM05D005900 ORTHO05D007306 9.5e-30 134.4 202 45.0
Gohir.D01G018900 Gossypium hirsutum HOM05D005900 ORTHO05D007306 1.6e-29 133.7 220 45.9
PGSC0003DMG400008953 Solanum tuberosum HOM05D005900 ORTHO05D007306 8.1e-29 131.3 202 42.1
GSVIVG01001102001 Vitis vinifera HOM05D005900 ORTHO05D007306 1.1e-28 131.0 212 43.4
Thecc.02G191100 Theobroma cacao HOM05D005900 ORTHO05D007306 3.1e-28 129.4 234 44.0
RcHm_v2.0_Chr4g0428761 Rosa chinensis HOM05D005900 ORTHO05D007306 5.2e-28 128.6 226 39.4
Dinv35828 Davidia involucrata HOM05D005900 ORTHO05D007306 1.2e-27 127.5 223 42.6
Sopen09g004610 Solanum pennellii HOM05D005900 ORTHO05D007306 2.0e-27 126.7 202 41.1
Oeu055297.1 Olea europaea HOM05D005900 ORTHO05D007306 2.6e-27 126.3 201 41.3
CiPaw.03G184600 Carya illinoinensis HOM05D005900 ORTHO05D007306 3.4e-27 125.9 177 45.8
Eucgr.E01503 Eucalyptus grandis HOM05D005900 ORTHO05D007306 3.4e-27 125.9 136 50.7
QL03p048972 Quercus lobata HOM05D005900 ORTHO05D007306 4.4e-27 125.6 222 44.1
Solyc09g009850.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 4.4e-27 125.6 202 40.6
Eucgr.B02910 Eucalyptus grandis HOM05D005900 ORTHO05D007306 5.8e-27 125.2 204 43.1
Hund20854 Selenicereus undatus HOM05D005900 ORTHO05D007306 5.8e-27 125.2 216 42.1
TWI36G0396 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 7.6e-27 124.8 190 43.2
Peaxi162Scf00698g00117 Petunia axillaris HOM05D005900 ORTHO05D007306 9.9e-27 124.4 216 40.3
Atru.chr12.1436 Acer truncatum HOM05D005900 ORTHO05D007306 1.7e-26 123.6 227 42.7
CANSAT80G1963 Cannabis sativa HOM05D005900 ORTHO05D007306 3.8e-26 122.5 222 41.0
Gohir.A01G020300 Gossypium hirsutum HOM05D005900 ORTHO05D007306 3.8e-26 122.5 220 42.7
CiPaw.05G100400 Carya illinoinensis HOM05D005900 ORTHO05D007306 4.9e-26 122.1 198 42.9
Sabra01G0047700 Salix brachista HOM05D005900 ORTHO05D007306 8.4e-26 121.3 198 41.9
Ciclev10005823m.g Citrus clementina HOM05D005900 ORTHO05D007306 3.2e-25 119.4 213 42.3
CDE09G0879 Ceratophyllum demersum HOM05D005900 ORTHO05D007306 5.4e-25 118.6 200 39.5
Nitab4.5_0000059g0460 Nicotiana tabacum HOM05D005900 ORTHO05D007306 5.4e-25 118.6 220 39.1
Potri.001G068500 Populus trichocarpa HOM05D005900 ORTHO05D007306 5.4e-25 118.6 197 41.1
MBI11_g07033_MAGBIO Magnolia biondii HOM05D005900 ORTHO05D007306 9.2e-25 117.9 195 42.6
TAR629G1598 Trochodendron aralioides HOM05D005900 ORTHO05D007306 9.2e-25 117.9 216 36.1
CANSAT80G1771 Cannabis sativa HOM05D005900 ORTHO05D007306 2.1e-24 116.7 222 39.6
Ca_13888_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 2.7e-24 116.3 205 40.0
Prupe.1G213900 Prunus persica HOM05D005900 ORTHO05D007306 3.5e-24 115.9 199 40.7
Nitab4.5_0000191g0220 Nicotiana tabacum HOM05D005900 ORTHO05D007306 4.6e-24 115.5 220 38.6
MSTRG.22403 Avicennia marina HOM05D005900 ORTHO05D007306 7.8e-24 114.8 199 39.7
CSS0005312 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 1.3e-23 114.0 199 39.7
Ca_23210_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 1.3e-23 114.0 205 40.5
FAN07G0479 Fragaria x ananassa HOM05D005900 ORTHO05D007306 1.3e-23 114.0 217 39.2
Medtr8g012410 Medicago truncatula HOM05D005900 ORTHO05D007306 1.3e-23 114.0 211 40.3
Dinv16498 Davidia involucrata HOM05D005900 ORTHO05D007306 2.3e-23 113.2 204 43.1
FvH4_4g22530 Fragaria vesca HOM05D005900 ORTHO05D007306 2.3e-23 113.2 217 39.2
FAN12G4206 Fragaria x ananassa HOM05D005900 ORTHO05D007306 2.3e-23 113.2 217 39.2
FAN17G1441 Fragaria x ananassa HOM05D005900 ORTHO05D007306 2.3e-23 113.2 146 45.9
PGSC0003DMG400022718 Solanum tuberosum HOM05D005900 ORTHO05D007306 2.3e-23 113.2 213 39.0
CsaV3_4G033440 Cucumis sativus L. HOM05D005900 ORTHO05D007306 5.1e-23 112.1 194 37.1
Sc06g0007790 Simmondsia chinensis HOM05D005900 ORTHO05D007306 6.6e-23 111.7 195 41.5
Solyc01g008760.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 6.6e-23 111.7 217 39.6
Lalb_Chr15g0079851 Lupinus albus HOM05D005900 ORTHO05D007306 8.7e-23 111.3 192 39.6
Sed0015511 Sechium edule HOM05D005900 ORTHO05D007306 8.7e-23 111.3 195 39.5
TAR371G1211 Trochodendron aralioides HOM05D005900 ORTHO05D007306 1.1e-22 110.9 216 36.6
ClCG11G017800 Citrullus lanatus HOM05D005900 ORTHO05D007306 1.9e-22 110.2 179 36.3
Cc04_g15880 Coffea canephora HOM05D005900 ORTHO05D007306 3.3e-22 109.4 216 38.0
Hma1.2p1_1494F.1_g286930 Hydrangea macrophylla HOM05D005900 ORTHO05D007306 4.3e-22 109.0 214 39.3
TWI18G0365 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 4.3e-22 109.0 188 41.5
SGA_v2.0_scaffold154G37193 Striga asiatica HOM05D005900 ORTHO05D007306 5.6e-22 108.6 199 40.2
Os01g0259900 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 7.3e-22 108.2 197 41.6
PGR102G3094 Punica granatum HOM05D005900 ORTHO05D007306 7.3e-22 108.2 198 37.9
SalBow2G0170 Salvia bowleyana HOM05D005900 ORTHO05D007306 7.3e-22 108.2 190 40.0
SGA_v2.0_scaffold28G11983 Striga asiatica HOM05D005900 ORTHO05D007306 7.3e-22 108.2 199 40.7
PSO017G3279 Papaver somniferum HOM05D005900 ORTHO05D007306 1.2e-21 107.5 198 38.9
PSO170G6181 Papaver somniferum HOM05D005900 ORTHO05D007306 1.2e-21 107.5 202 38.6
Psat4g204640 Pisum sativum HOM05D005900 ORTHO05D007306 2.1e-21 106.7 178 41.0
Cfa010215 Carpinus fangiana HOM05D005900 ORTHO05D007306 2.8e-21 106.3 176 40.9
Os08g0422600 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 3.6e-21 105.9 190 37.4
EL10Ac1g01696 Beta vulgaris HOM05D005900 ORTHO05D007306 1.1e-20 104.4 194 37.6
vmacro15379 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 1.4e-20 104.0 222 36.0
Haze_24259 Corylus avellana HOM05D005900 ORTHO05D007306 2.4e-20 103.2 226 38.1
Lsat_1_v5_gn_2_95001 Lactuca sativa HOM05D005900 ORTHO05D007306 5.3e-20 102.1 193 38.9
MD13G1131700 Malus domestica HOM05D005900 ORTHO05D007306 5.3e-20 102.1 200 41.0
Migut.C01115 Erythranthe guttata HOM05D005900 ORTHO05D007306 9.0e-20 101.3 196 37.2
AUR62006518 Chenopodium quinoa HOM05D005900 ORTHO05D007306 1.5e-19 100.5 213 36.2
Cfa011664 Carpinus fangiana HOM05D005900 ORTHO05D007306 2.6e-19 99.8 226 36.3
Zm00001eb127900 Zea mays HOM05D005900 ORTHO05D007306 2.6e-19 99.8 215 36.7
AUR62025013 Chenopodium quinoa HOM05D005900 ORTHO05D007306 4.4e-19 99.0 197 36.0
MD16G1142000 Malus domestica HOM05D005900 ORTHO05D007306 4.4e-19 99.0 204 39.7
arahy.Tifrunner.gnm1.ann1.UQH0GN Arachis hypogaea HOM05D005900 ORTHO05D007306 1.7e-18 97.1 212 34.9
Oeu001539.2 Olea europaea HOM05D005900 ORTHO05D007306 1.7e-18 97.1 240 32.5
TPR.G16445 Trifolium pratense HOM05D005900 ORTHO05D007306 1.7e-18 97.1 206 37.9
ECA238G4295 Erigeron canadensis HOM05D005900 ORTHO05D007306 2.9e-18 96.3 186 41.4
Peaxi162Scf00079g01513 Petunia axillaris HOM05D005900 ORTHO05D007306 2.9e-18 96.3 242 33.5
Migut.C00405 Erythranthe guttata HOM05D005900 ORTHO05D007306 3.8e-18 95.9 212 36.3
Rhsim12G0016500 Rhododendron simsii HOM05D005900 ORTHO05D007306 3.8e-18 95.9 205 37.6
Lj3g0021746 Lotus japonicus HOM05D005900 ORTHO05D007306 2.4e-17 93.2 220 36.8
Aqoxy4G02969 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 3.2e-17 92.8 190 35.8
Duzib052G0736 Durio zibethinus HOM05D005900 ORTHO05D007306 5.4e-17 92.0 183 37.2
arahy.Tifrunner.gnm1.ann1.5NZU5R Arachis hypogaea HOM05D005900 ORTHO05D007306 9.3e-17 91.3 214 36.4
ATR0582G041 Amborella trichopoda HOM05D005900 ORTHO05D007306 1.3e-15 87.4 192 34.9
BolC3t18409H Brassica oleracea HOM05D005900 ORTHO05D007306 3.0e-15 86.3 52 75.0
VMungo0331G1117 Vigna mungo HOM05D005900 ORTHO05D007306 3.9e-15 85.9 214 35.0
Ca_13890_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 1.5e-14 84.0 91 47.3
Glyma.07G200400 Glycine max HOM05D005900 ORTHO05D007306 9.6e-14 81.3 210 35.2
Lj6g0004130 Lotus japonicus HOM05D005900 ORTHO05D007306 1.6e-13 80.5 178 36.0
Manes.08G100300 Manihot esculenta HOM05D005900 ORTHO05D007306 2.1e-13 80.1 155 35.5
vmacro01013 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 3.6e-13 79.3 248 31.9
Glyma.13G175800 Glycine max HOM05D005900 ORTHO05D007306 6.2e-13 78.6 210 34.3
Aqoxy83s001 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 1.5e-11 73.9 154 36.4
Phvul.002G231200 Phaseolus vulgaris HOM05D005900 ORTHO05D007306 1.5e-11 73.9 215 34.0
Aqoxy4G03322 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 2.0e-11 73.6 151 37.7
VMungo0251G3272 Vigna mungo HOM05D005900 ORTHO05D007306 1.3e-10 70.9 204 32.8
Atru.chr12.1335 Acer truncatum HOM05D005900 ORTHO05D007306 2.4e-09 66.6 61 52.5
unitig_747.g21266 Utricularia gibba HOM05D005900 ORTHO05D007306 2.4e-09 66.6 90 36.7
Cc04_g15860 Coffea canephora HOM05D005900 ORTHO05D007306 5.4e-09 65.5 78 39.7
C09p09980 Brassica napus HOM05D063710 ORTHO05D042243 1.2e-08 64.3 66 66.7
BolC9t53906H Brassica oleracea HOM05D063710 ORTHO05D042243 1.2e-08 64.3 66 66.7
BraA06t26085Z Brassica rapa HOM05D009868 ORTHO05D027327 2.7e-08 63.2 41 73.2
MELO3C032361.2 Cucumis melo HOM05D005900 ORTHO05D007306 1.0e-07 61.2 182 36.3
Aqoxy2G04193 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 1.3e-07 60.8 135 37.8


User provided reference genes

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