Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p43350 Brassica napus HOM05D003963 ORTHO05D004558 1.1e-163 580.9 563 100.0
BraA02t09261Z Brassica rapa HOM05D003963 ORTHO05D004558 1.7e-161 573.5 562 99.3
C02p63440 Brassica napus HOM05D003963 ORTHO05D004558 3.5e-154 549.3 563 96.4
BolC2t12411H Brassica oleracea HOM05D003963 ORTHO05D004558 3.5e-154 549.3 563 96.4
BcaB07g29747 Brassica carinata HOM05D003963 ORTHO05D004558 5.4e-131 472.2 574 92.0
BcaC03g18430 Brassica carinata HOM05D003963 ORTHO05D004558 2.6e-117 426.8 620 83.4
Sp2g27620 Schrenkiella parvula HOM05D003963 ORTHO05D004558 1.2e-114 417.9 633 82.1
BraA06t26067Z Brassica rapa HOM05D003963 ORTHO05D004558 6.0e-114 415.6 607 84.0
AL8G41940 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 5.1e-113 412.5 635 81.3
Carub.0008s2535 Capsella rubella HOM05D003963 ORTHO05D004558 3.3e-112 409.8 638 82.0
AT5G64550 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 7.6e-109 398.7 637 80.7
A06p31280 Brassica napus HOM05D003963 ORTHO05D004558 7.6e-109 398.7 609 83.4
BolC3t18432H Brassica oleracea HOM05D003963 ORTHO05D004558 3.8e-108 396.4 612 83.0
C03p61710 Brassica napus HOM05D003963 ORTHO05D004558 4.9e-108 396.0 613 83.0
Thhalv10003819m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 1.9e-107 394.0 633 80.6
CARHR278520 Cardamine hirsuta HOM05D003963 ORTHO05D004558 4.0e-102 376.3 620 79.2
A09p08700 Brassica napus HOM05D003963 ORTHO05D004558 8.8e-81 305.4 600 75.8
BraA09t36518Z Brassica rapa HOM05D003963 ORTHO05D004558 2.5e-80 303.9 600 75.8
Aa31LG1G17380 Aethionema arabicum HOM05D003963 ORTHO05D004558 9.7e-80 302.0 600 75.5
Aa31LG3G17400 Aethionema arabicum HOM05D003963 ORTHO05D004558 3.8e-68 263.5 628 68.6
Aa31sc1834G20 Aethionema arabicum HOM05D003963 ORTHO05D004558 1.4e-65 255.0 621 68.8
THA.LOC104799580 Tarenaya hassleriana HOM05D003963 ORTHO05D004558 3.5e-61 240.4 625 67.2
Sp6g33710 Schrenkiella parvula HOM05D003963 ORTHO05D004558 3.6e-58 230.3 578 71.3
Thhalv10013049m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 5.7e-56 223.0 601 69.1
AL6G20100 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 1.4e-54 218.4 597 68.5
CARHR203720 Cardamine hirsuta HOM05D003963 ORTHO05D004558 1.2e-48 198.7 585 69.6
AT5G09670 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 4.4e-48 196.8 577 69.2
Potri.003G023300 Populus trichocarpa HOM05D003963 ORTHO05D004558 8.3e-47 192.6 618 64.2
Potri.001G206600 Populus trichocarpa HOM05D003963 ORTHO05D004558 2.0e-45 188.0 619 63.2
TWI59G0617 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 2.7e-45 187.6 622 65.3
Manes.04G062400 Manihot esculenta HOM05D003963 ORTHO05D004558 7.7e-45 186.0 645 61.1
BcaC04g23312 Brassica carinata HOM05D003963 ORTHO05D004558 2.3e-44 184.5 558 70.8
Sabra03G0014600 Salix brachista HOM05D003963 ORTHO05D004558 2.9e-44 184.1 620 63.9
Duzib052G0219 Durio zibethinus HOM05D003963 ORTHO05D004558 3.8e-44 183.7 642 61.4
Cpa.g.sc0.13 Carica papaya HOM05D003963 ORTHO05D004558 1.1e-43 182.2 621 63.8
Thecc.02G143400 Theobroma cacao HOM05D003963 ORTHO05D004558 3.3e-43 180.6 643 61.6
TWI23G1041 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 4.2e-43 180.3 623 62.1
Ciclev10000572m.g Citrus clementina HOM05D003963 ORTHO05D004558 1.6e-42 178.3 608 64.6
FvH4_5g30651 Fragaria vesca HOM05D003963 ORTHO05D004558 1.6e-42 178.3 608 63.5
AUR62031300 Chenopodium quinoa HOM05D003963 ORTHO05D004558 2.1e-42 177.9 611 62.4
COL.COLO4_20869 Corchorus olitorius HOM05D003963 ORTHO05D004558 4.7e-42 176.8 643 61.1
RcHm_v2.0_Chr7g0225521 Rosa chinensis HOM05D003963 ORTHO05D004558 8.0e-42 176.0 612 62.9
Sabra03G0014700 Salix brachista HOM05D003963 ORTHO05D004558 8.0e-42 176.0 610 65.1
FAN04G2665 Fragaria x ananassa HOM05D003963 ORTHO05D004558 2.3e-41 174.5 607 63.6
BolC9t53891H Brassica oleracea HOM05D003963 ORTHO05D004558 4.0e-41 173.7 215 51.2
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 2.0e-40 171.4 616 62.2
BraA02t04995Z Brassica rapa HOM05D003963 ORTHO05D004558 2.6e-40 171.0 556 68.3
AUR62027385 Chenopodium quinoa HOM05D003963 ORTHO05D004558 2.6e-40 171.0 610 62.3
A02p00100 Brassica napus HOM05D003963 ORTHO05D004558 4.4e-40 170.2 559 64.6
FAN13G1550 Fragaria x ananassa HOM05D003963 ORTHO05D004558 4.4e-40 170.2 607 65.7
Gorai.013G063300 Gossypium raimondii HOM05D003963 ORTHO05D004558 1.7e-39 168.3 641 62.7
Haze_10775 Corylus avellana HOM05D003963 ORTHO05D004558 2.9e-39 167.5 615 62.6
Sed0018276 Sechium edule HOM05D003963 ORTHO05D004558 2.9e-39 167.5 632 61.1
ClCG06G009720 Citrullus lanatus HOM05D003963 ORTHO05D004558 1.8e-38 164.9 634 60.3
CSS0000527 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 4.1e-38 163.7 643 62.8
CSS0022227 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 4.1e-38 163.7 643 62.7
Cfa005579 Carpinus fangiana HOM05D003963 ORTHO05D004558 4.1e-38 163.7 613 62.0
Duzib248G1667 Durio zibethinus HOM05D003963 ORTHO05D004558 4.1e-38 163.7 640 60.5
QL11p019412 Quercus lobata HOM05D003963 ORTHO05D004558 4.1e-38 163.7 618 62.0
BcaB05g21539 Brassica carinata HOM05D003963 ORTHO05D004558 5.4e-38 163.3 561 64.9
Gohir.D13G056000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 7.0e-38 162.9 641 62.9
MD15G1414300 Malus domestica HOM05D003963 ORTHO05D004558 7.0e-38 162.9 626 61.5
Ca_18336_v3 Cicer arietinum L. HOM05D003963 ORTHO05D004558 3.5e-37 160.6 632 61.4
Prupe.1G559700 Prunus persica HOM05D003963 ORTHO05D004558 5.9e-37 159.8 613 61.8
MELO3C020350.2 Cucumis melo HOM05D003963 ORTHO05D004558 1.0e-36 159.1 631 59.9
EL10Ac8g19340 Beta vulgaris HOM05D003963 ORTHO05D004558 1.7e-36 158.3 601 62.7
MD08G1221900 Malus domestica HOM05D003963 ORTHO05D004558 1.7e-36 158.3 615 62.0
CsaV3_2G011200 Cucumis sativus L. HOM05D003963 ORTHO05D004558 3.0e-36 157.5 631 60.4
Gorai.005G217900 Gossypium raimondii HOM05D003963 ORTHO05D004558 3.9e-36 157.1 642 59.3
Glyma.08G074900 Glycine max HOM05D003963 ORTHO05D004558 5.0e-36 156.8 615 60.7
C09p09830 Brassica napus HOM05D003963 ORTHO05D004558 1.1e-35 155.6 202 50.0
ECA236G3037 Erigeron canadensis HOM05D003963 ORTHO05D004558 1.5e-35 155.2 584 66.8
Gohir.D02G195000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 2.5e-35 154.5 642 59.2
CANSAT11G0470 Cannabis sativa HOM05D003963 ORTHO05D004558 3.3e-35 154.1 613 61.8
Glyma.05G120100 Glycine max HOM05D003963 ORTHO05D004558 1.2e-34 152.1 615 60.7
Medtr4g094290 Medicago truncatula HOM05D003963 ORTHO05D004558 1.2e-34 152.1 633 60.2
CiPaw.05G038900 Carya illinoinensis HOM05D003963 ORTHO05D004558 1.6e-34 151.8 624 60.7
Lj4g0008212 Lotus japonicus HOM05D003963 ORTHO05D004558 2.8e-34 151.0 636 59.1
BcaB04g19973 Brassica carinata HOM05D003963 ORTHO05D004558 3.6e-34 150.6 131 63.4
Gohir.A13G065700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 3.6e-34 150.6 641 62.7
HanXRQChr11g0337121 Helianthus annuus HOM05D003963 ORTHO05D004558 2.3e-33 147.9 602 61.8
VMungo0251G0315 Vigna mungo HOM05D003963 ORTHO05D004558 6.8e-33 146.4 614 60.7
Lsat_1_v5_gn_7_80140 Lactuca sativa HOM05D003963 ORTHO05D004558 8.9e-33 146.0 597 62.3
Ah.14g085400 Amaranthus hybridus HOM05D003963 ORTHO05D004558 3.4e-32 144.1 620 60.8
Psat7g097440 Pisum sativum HOM05D003963 ORTHO05D004558 3.4e-32 144.1 632 60.0
Cc02_g21840 Coffea canephora HOM05D003963 ORTHO05D004558 5.8e-32 143.3 624 59.1
Dinv19323 Davidia involucrata HOM05D003963 ORTHO05D004558 7.5e-32 142.9 625 58.9
Hma1.2p1_0557F.1_g178060 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 1.3e-31 142.1 588 64.8
Hma1.2p1_0217F.1_g091740 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 4.9e-31 140.2 604 61.6
Oeu037198.2 Olea europaea HOM05D003963 ORTHO05D004558 6.4e-31 139.8 615 60.3
BcaC03g13269 Brassica carinata HOM05D003963 ORTHO05D004558 8.3e-31 139.4 557 54.0
BolC2t06362H Brassica oleracea HOM05D006324 ORTHO05D007463 8.3e-31 139.4 557 54.0
Ah.09g232110 Amaranthus hybridus HOM05D003963 ORTHO05D004558 1.1e-30 139.0 613 60.4
Actinidia28070 Actinidia chinensis HOM05D003963 ORTHO05D004558 1.6e-29 135.2 614 59.6
Peaxi162Scf00001g00041 Petunia axillaris HOM05D003963 ORTHO05D004558 1.6e-29 135.2 618 60.4
Peaxi162Scf00001g00043 Petunia axillaris HOM05D003963 ORTHO05D004558 1.6e-29 135.2 618 60.4
vmacro01810 Vaccinium macrocarpon HOM05D003963 ORTHO05D004558 1.6e-29 135.2 602 60.8
Phvul.002G206700 Phaseolus vulgaris HOM05D003963 ORTHO05D004558 2.0e-29 134.8 582 62.4
Gohir.A03G171700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 3.5e-29 134.0 589 61.5
Lalb_Chr13g0291591 Lupinus albus HOM05D003963 ORTHO05D004558 7.8e-29 132.9 620 61.5
DCAR_029216 Daucus carota HOM05D003963 ORTHO05D004558 1.3e-28 132.1 591 64.3
Nitab4.5_0002865g0100 Nicotiana tabacum HOM05D003963 ORTHO05D004558 8.6e-28 129.4 623 59.6
TAR381G1468 Trochodendron aralioides HOM05D003963 ORTHO05D004558 8.6e-28 129.4 616 62.3
Dinv24217 Davidia involucrata HOM05D003963 ORTHO05D004558 1.9e-27 128.3 607 60.6
CAN.G523.95 Capsicum annuum HOM05D003963 ORTHO05D004558 3.3e-27 127.5 616 61.9
Rhsim11G0134700 Rhododendron simsii HOM05D003963 ORTHO05D004558 3.3e-27 127.5 624 59.6
Eucgr.I02691 Eucalyptus grandis HOM05D003963 ORTHO05D004558 4.3e-27 127.1 620 60.0
Nitab4.5_0003748g0020 Nicotiana tabacum HOM05D003963 ORTHO05D004558 5.6e-27 126.7 620 59.5
Peaxi162Scf00003g00367 Petunia axillaris HOM05D003963 ORTHO05D004558 7.3e-27 126.3 613 61.2
TPR.G10467 Trifolium pratense HOM05D003963 ORTHO05D004558 1.2e-26 125.6 248 40.3
GSVIVG01038733001 Vitis vinifera HOM05D003963 ORTHO05D004558 1.2e-26 125.6 208 45.2
CiPaw.06G151200 Carya illinoinensis HOM05D003963 ORTHO05D004558 1.6e-26 125.2 621 59.4
Migut.B00637 Erythranthe guttata HOM05D003963 ORTHO05D004558 2.1e-26 124.8 577 63.1
Actinidia00250 Actinidia chinensis HOM05D003963 ORTHO05D004558 3.6e-26 124.0 579 59.8
PGSC0003DMG400029740 Solanum tuberosum HOM05D003963 ORTHO05D004558 6.2e-26 123.2 618 61.8
Sopen01g047420 Solanum pennellii HOM05D003963 ORTHO05D004558 8.1e-26 122.9 619 61.6
Solyc01g104910.3 Solanum lycopersicum HOM05D003963 ORTHO05D004558 1.1e-25 122.5 616 61.5
Aqoxy6G00464 Aquilegia oxysepala HOM05D003963 ORTHO05D004558 1.8e-25 121.7 611 62.5
Hund06704 Selenicereus undatus HOM05D003963 ORTHO05D004558 8.9e-25 119.4 592 61.3
Atru.chr6.908 Acer truncatum HOM05D003963 ORTHO05D004558 2.0e-24 118.2 257 38.1
Nn1g05173 Nelumbo nucifera HOM05D003963 ORTHO05D004558 4.4e-24 117.1 622 58.4
Oeu000233.2 Olea europaea HOM05D003963 ORTHO05D004558 5.8e-24 116.7 612 60.3
Atru.chr10.2100 Acer truncatum HOM05D003963 ORTHO05D004558 7.5e-24 116.3 221 65.6
SalBow5G2159 Salvia bowleyana HOM05D003963 ORTHO05D004558 9.8e-24 115.9 599 59.9
Lalb_Chr12g0208491 Lupinus albus HOM05D003963 ORTHO05D004558 1.7e-23 115.2 610 59.2
Sc14g0002710 Simmondsia chinensis HOM05D003963 ORTHO05D004558 1.1e-22 112.5 613 58.7
MBI05_g46461_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 3.2e-22 110.9 614 62.5
PSO541G3622 Papaver somniferum HOM05D003963 ORTHO05D004558 3.2e-22 110.9 620 60.3
SalBow6G3757 Salvia bowleyana HOM05D003963 ORTHO05D004558 3.5e-21 107.5 583 60.7
SalBow6G4534 Salvia bowleyana HOM05D003963 ORTHO05D004558 3.5e-21 107.5 583 60.7
Nn5g28887 Nelumbo nucifera HOM05D003963 ORTHO05D004558 1.7e-20 105.1 244 38.9
Oeu037196.1 Olea europaea HOM05D003963 ORTHO05D004558 3.9e-20 104.0 239 37.7
MSTRG.16566 Avicennia marina HOM05D003963 ORTHO05D004558 3.3e-19 100.9 622 56.4
ECA234G1426 Erigeron canadensis HOM05D003963 ORTHO05D004558 4.3e-19 100.5 212 38.7
PSO675G1096 Papaver somniferum HOM05D003963 ORTHO05D004558 3.6e-18 97.4 242 34.7
Lalb_Chr07g0189461 Lupinus albus HOM05D003963 ORTHO05D004558 1.8e-17 95.1 602 58.8
unitig_62.g23623 Utricularia gibba HOM05D003963 ORTHO05D004558 1.8e-17 95.1 192 37.5
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 6.8e-17 93.2 585 59.8
Zm00001eb244890 Zea mays HOM05D003963 ORTHO05D004558 2.0e-16 91.7 565 61.8
Rhsim11G0135400 Rhododendron simsii HOM05D003963 ORTHO05D004558 3.4e-16 90.9 233 36.5
SGA_v2.0_scaffold45G17289 Striga asiatica HOM05D003963 ORTHO05D004558 5.8e-16 90.1 204 37.3
Atru.chr10.2101 Acer truncatum HOM05D003963 ORTHO05D004558 7.6e-16 89.7 242 34.7
Lj5C243T4 Lonicera japonica HOM05D003963 ORTHO05D004558 2.2e-15 88.2 570 60.4
Peaxi162Scf00152g01123 Petunia axillaris HOM05D003963 ORTHO05D004558 4.1e-14 84.0 258 32.9
CDE02G0069 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 3.5e-13 80.9 210 34.3
Zm00001eb182980 Zea mays HOM05D003963 ORTHO05D004558 4.6e-13 80.5 201 38.3
Lj9P318T69 Lonicera japonica HOM05D003963 ORTHO05D004558 6.0e-13 80.1 420 73.6
Os04g0458200 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 1.3e-12 79.0 611 59.1
Lsat_1_v5_gn_5_106681 Lactuca sativa HOM05D003963 ORTHO05D004558 1.7e-12 78.6 218 58.3
Os04g0640900 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 5.1e-12 77.0 236 34.3
ATR0564G216 Amborella trichopoda HOM05D003963 ORTHO05D004558 1.1e-11 75.9 203 36.0
Zm00001eb423980 Zea mays HOM05D003963 ORTHO05D004558 2.5e-11 74.7 213 32.9
HanXRQChr10g0293231 Helianthus annuus HOM05D003963 ORTHO05D004558 5.6e-11 73.6 191 37.2
Zm00001eb068980 Zea mays HOM05D003963 ORTHO05D004558 1.2e-10 72.4 215 36.3
Zm00001eb080920 Zea mays HOM05D003963 ORTHO05D004558 1.2e-10 72.4 574 61.5
CDE05G1767 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 2.8e-10 71.2 183 35.5
Zm00001eb347870 Zea mays HOM05D003963 ORTHO05D010684 6.2e-10 70.1 216 35.6
Os02g0575700 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 8.9e-09 66.2 259 29.7
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 5.8e-08 63.5 161 34.2
HPP92_016461 Vanilla planifolia HOM05D003963 ORTHO05D004558 9.9e-08 62.8 109 40.4
HPP92_027148 Vanilla planifolia HOM05D003963 ORTHO05D004558 1.3e-07 62.4 191 36.6
Pp3c11_24820 Physcomitrium patens HOM05D031910 ORTHO05D004558 8.4e-07 59.7 167 35.3
HPP92_006483 Vanilla planifolia HOM05D003548 ORTHO05D004066 1.4e-06 58.9 34 76.5
Haze_09989 Corylus avellana HOM05D003963 ORTHO05D004558 2.4e-06 58.2 110 40.9
DCAR_006852 Daucus carota HOM05D003548 ORTHO05D004066 3.2e-06 57.8 35 71.4
DCAR_008526 Daucus carota HOM05D003548 ORTHO05D004066 3.2e-06 57.8 35 71.4
Cc08_g15520 Coffea canephora HOM05D003548 ORTHO05D004066 4.2e-06 57.4 38 68.4
Aqoxy5G04044 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 5.4e-06 57.0 34 73.5
HanXRQChr06g0166281 Helianthus annuus HOM05D003548 ORTHO05D004066 5.4e-06 57.0 60 53.3
PSO135G0411 Papaver somniferum HOM05D003548 ORTHO05D004066 5.4e-06 57.0 64 51.6
PSO384G2366 Papaver somniferum HOM05D003548 ORTHO05D004066 5.4e-06 57.0 64 51.6
Hma1.2p1_0217F.1_g091680 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 7.1e-06 56.6 81 43.2
CSS0034195 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 9.3e-06 56.2 34 73.5
Lj2P175T19 Lonicera japonica HOM05D003548 ORTHO05D004066 9.3e-06 56.2 38 65.8
Oeu059583.1 Olea europaea HOM05D003548 ORTHO05D004066 9.3e-06 56.2 38 65.8


User provided reference genes

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