Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p42710 Brassica napus HOM05D004810 ORTHO05D006272 2.8e-117 425.2 208 100.0
BolC9t53072H Brassica oleracea HOM05D004810 ORTHO05D006272 8.5e-106 387.1 206 92.7
C09p01390 Brassica napus HOM05D004810 ORTHO05D006272 1.6e-104 382.9 206 91.7
BcaC04g24069 Brassica carinata HOM05D004810 ORTHO05D006272 4.6e-104 381.3 206 91.3
BraA09t35800Z Brassica rapa HOM05D004810 ORTHO05D006272 3.0e-103 378.6 206 90.8
A09p01330 Brassica napus HOM05D004810 ORTHO05D006272 8.8e-103 377.1 206 90.3
BcaB01g02106 Brassica carinata HOM05D004810 ORTHO05D006272 1.3e-93 346.7 207 82.6
CARHR249820 Cardamine hirsuta HOM05D004810 ORTHO05D006272 1.7e-93 346.3 206 80.1
Sp6g01700 Schrenkiella parvula HOM05D004810 ORTHO05D006272 3.7e-93 345.1 206 81.6
AT4G01860 Arabidopsis thaliana HOM05D004810 ORTHO05D006272 4.8e-93 344.7 206 81.6
AL6G51450 Arabidopsis lyrata HOM05D004810 ORTHO05D006272 2.4e-92 342.4 206 79.6
Carub.0006s3538 Capsella rubella HOM05D004810 ORTHO05D006272 4.5e-91 338.2 208 77.9
Thhalv10027621m.g Eutrema salsugineum HOM05D004810 ORTHO05D006272 1.4e-89 333.2 210 78.6
THA.LOC104825930 Tarenaya hassleriana HOM05D004810 ORTHO05D006272 3.1e-76 288.9 206 67.0
Aa31LG5G1530 Aethionema arabicum HOM05D004810 ORTHO05D006272 1.6e-75 286.6 217 66.4
CiPaw.07G123600 Carya illinoinensis HOM05D004810 ORTHO05D006272 5.0e-58 228.4 204 55.4
ClCG10G011790 Citrullus lanatus HOM05D004810 ORTHO05D006272 1.6e-56 223.4 211 55.9
QL12p034348 Quercus lobata HOM05D004810 ORTHO05D006272 4.7e-56 221.9 209 53.1
Cfa004881 Carpinus fangiana HOM05D004810 ORTHO05D006272 1.0e-55 220.7 205 55.1
Dinv12098 Davidia involucrata HOM05D004810 ORTHO05D006272 4.4e-54 215.3 205 52.7
Ciclev10018506m.g Citrus clementina HOM05D004810 ORTHO05D006272 7.5e-54 214.5 203 51.7
Potri.002G189400 Populus trichocarpa HOM05D004810 ORTHO05D006272 9.8e-54 214.2 201 51.7
Gorai.008G136000 Gossypium raimondii HOM05D004810 ORTHO05D006272 1.3e-53 213.8 200 54.0
Medtr7g110260 Medicago truncatula HOM05D004810 ORTHO05D006272 1.7e-53 213.4 204 52.5
Sed0025982 Sechium edule HOM05D004810 ORTHO05D006272 1.7e-53 213.4 208 53.4
Prupe.3G004200 Prunus persica HOM05D004810 ORTHO05D006272 6.4e-53 211.5 210 51.0
COL.COLO4_23155 Corchorus olitorius HOM05D004810 ORTHO05D006272 1.1e-52 210.7 205 50.2
TWI14G1319 Tripterygium wilfordii HOM05D004810 ORTHO05D006272 1.9e-52 209.9 204 52.9
Psat3g018400 Pisum sativum HOM05D004810 ORTHO05D006272 2.4e-52 209.5 197 52.8
CsaV3_3G031590 Cucumis sativus L. HOM05D004810 ORTHO05D006272 3.2e-52 209.1 211 52.1
Lj1g0015466 Lotus japonicus HOM05D004810 ORTHO05D006272 3.2e-52 209.1 197 53.8
Haze_05120 Corylus avellana HOM05D004810 ORTHO05D006272 5.4e-52 208.4 198 54.5
TPR.G4131 Trifolium pratense HOM05D004810 ORTHO05D006272 5.4e-52 208.4 207 51.7
MD09G1293000 Malus domestica HOM05D004810 ORTHO05D006272 1.2e-51 207.2 213 49.8
TAR362G0253 Trochodendron aralioides HOM05D004810 ORTHO05D006272 6.0e-51 204.9 202 50.0
MELO3C012913.2 Cucumis melo HOM05D004810 ORTHO05D006272 7.8e-51 204.5 213 51.2
Oeu044752.1 Olea europaea HOM05D004810 ORTHO05D006272 7.8e-51 204.5 199 47.7
vmacro02368 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 7.8e-51 204.5 199 49.7
Thecc.01G322600 Theobroma cacao HOM05D004810 ORTHO05D006272 1.3e-50 203.8 195 53.8
Duzib138G1217 Durio zibethinus HOM05D004810 ORTHO05D006272 1.7e-50 203.4 202 52.0
Sabra02G0166300 Salix brachista HOM05D004810 ORTHO05D006272 1.7e-50 203.4 201 49.8
DCAR_018250 Daucus carota HOM05D004810 ORTHO05D006272 2.3e-50 203.0 219 46.1
Migut.D00026 Erythranthe guttata HOM05D004810 ORTHO05D006272 2.3e-50 203.0 198 49.5
PSO170G6261 Papaver somniferum HOM05D004810 ORTHO05D006272 6.6e-50 201.4 210 49.0
PSO357G0647 Papaver somniferum HOM05D004810 ORTHO05D006272 6.6e-50 201.4 210 48.6
Rhsim13G0000700 Rhododendron simsii HOM05D004810 ORTHO05D006272 6.6e-50 201.4 196 49.0
Nn3g21885 Nelumbo nucifera HOM05D004810 ORTHO05D006272 2.5e-49 199.5 200 46.5
RcHm_v2.0_Chr3g0486381 Rosa chinensis HOM05D004810 ORTHO05D006272 2.5e-49 199.5 204 51.0
FAN23G0904 Fragaria x ananassa HOM05D004810 ORTHO05D006272 3.3e-49 199.1 200 50.0
FAN26G0889 Fragaria x ananassa HOM05D004810 ORTHO05D006272 3.3e-49 199.1 200 49.5
Ca_09236_v3 Cicer arietinum L. HOM05D004810 ORTHO05D006272 4.3e-49 198.7 197 51.3
FAN28G1956 Fragaria x ananassa HOM05D004810 ORTHO05D006272 5.6e-49 198.4 201 48.8
Eucgr.K00589 Eucalyptus grandis HOM05D004810 ORTHO05D006272 7.3e-49 198.0 211 48.3
MBI18_g09625_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D006272 9.5e-49 197.6 211 47.9
Sc18g0007580 Simmondsia chinensis HOM05D004810 ORTHO05D006272 1.6e-48 196.8 208 50.0
Hma1.2p1_0484F.1_g162890 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 2.1e-48 196.4 197 47.7
Hund09692 Selenicereus undatus HOM05D004810 ORTHO05D006272 2.1e-48 196.4 205 46.8
Hma1.2p1_0484F.1_g162880 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 2.8e-48 196.1 207 46.4
GSVIVG01028203001 Vitis vinifera HOM05D004810 ORTHO05D006272 6.2e-48 194.9 202 46.5
Aqoxy5G02779 Aquilegia oxysepala HOM05D004810 ORTHO05D006272 8.0e-48 194.5 204 47.1
Lalb_Chr04g0260131 Lupinus albus HOM05D004810 ORTHO05D006272 8.0e-48 194.5 204 47.1
Phvul.001G216500 Phaseolus vulgaris HOM05D004810 ORTHO05D006272 1.8e-47 193.4 204 51.5
FAN19G2038 Fragaria x ananassa HOM05D004810 ORTHO05D006272 3.1e-47 192.6 200 48.5
FvH4_1g26470 Fragaria vesca HOM05D004810 ORTHO05D006272 2.0e-46 189.9 206 46.1
PGR142G2149 Punica granatum HOM05D004810 ORTHO05D006272 2.0e-46 189.9 202 46.5
MSTRG.21726 Avicennia marina HOM05D004810 ORTHO05D006272 3.4e-46 189.1 199 48.7
AUR62011731 Chenopodium quinoa HOM05D004810 ORTHO05D006272 3.4e-46 189.1 200 47.5
Atru.chr5.900 Acer truncatum HOM05D004810 ORTHO05D006272 4.4e-46 188.7 192 50.5
SGA_v2.0_scaffold80G25689 Striga asiatica HOM05D004810 ORTHO05D006272 5.8e-46 188.3 202 48.5
Glyma.19G220100 Glycine max HOM05D004810 ORTHO05D006272 2.9e-45 186.0 194 50.0
CANSAT21G0194 Cannabis sativa HOM05D004810 ORTHO05D006272 8.3e-45 184.5 201 44.8
HanXRQChr06g0167991 Helianthus annuus HOM05D004810 ORTHO05D006272 4.1e-44 182.2 192 44.3
arahy.Tifrunner.gnm1.ann1.RS5E8T Arachis hypogaea HOM05D004810 ORTHO05D006272 2.7e-43 179.5 197 47.2
MD17G1281300 Malus domestica HOM05D004810 ORTHO05D006272 1.3e-42 177.2 207 43.5
arahy.Tifrunner.gnm1.ann1.NAX4N2 Arachis hypogaea HOM05D004810 ORTHO05D006272 1.7e-42 176.8 197 46.7
EL10As5g23578 Beta vulgaris HOM05D004810 ORTHO05D006272 5.1e-42 175.3 200 46.0
Nitab4.5_0002994g0090 Nicotiana tabacum HOM05D004810 ORTHO05D006272 5.1e-42 175.3 198 45.5
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 6.6e-42 174.9 194 44.3
Cc01_g21880 Coffea canephora HOM05D004810 ORTHO05D006272 8.6e-42 174.5 222 41.9
Sopen01g030000 Solanum pennellii HOM05D004810 ORTHO05D006272 8.6e-42 174.5 202 45.0
Lj2C1214G2 Lonicera japonica HOM05D004810 ORTHO05D006272 1.1e-41 174.1 198 46.5
Manes.05G010600 Manihot esculenta HOM05D004810 ORTHO05D006272 9.5e-41 171.0 168 51.2
ATR0796G051 Amborella trichopoda HOM05D004810 ORTHO05D006272 1.2e-40 170.6 212 40.6
HPP92_017301 Vanilla planifolia HOM05D004810 ORTHO05D006272 8.1e-40 167.9 197 47.2
CDE05G2014 Ceratophyllum demersum HOM05D004810 ORTHO05D006272 1.4e-39 167.2 197 44.7
Nitab4.5_0000222g0280 Nicotiana tabacum HOM05D004810 ORTHO05D006272 1.4e-39 167.2 198 45.5
Cpa.g.sc67.77 Carica papaya HOM05D004810 ORTHO05D006272 1.8e-39 166.8 156 55.1
Gohir.A12G121250 Gossypium hirsutum HOM05D004810 ORTHO05D006272 2.3e-39 166.4 175 49.7
Os03g0111800 Oryza sativa ssp. japonica HOM05D004810 ORTHO05D006272 4.9e-37 158.7 194 45.9
AagrBONN_evm.TU.Sc2ySwM_344.1995 Anthoceros agrestis HOM05D004810 ORTHO05D006272 6.4e-37 158.3 203 41.4
Pp3c3_23690 Physcomitrium patens HOM05D004810 ORTHO05D006272 8.3e-37 157.9 194 44.3
VMungo1383G1823 Vigna mungo HOM05D004810 ORTHO05D006272 1.4e-36 157.1 190 47.4
Actinidia21354 Actinidia chinensis HOM05D004810 ORTHO05D006272 5.4e-36 155.2 192 42.2
Lsat_1_v5_gn_8_167321 Lactuca sativa HOM05D004810 ORTHO05D006272 9.5e-33 144.4 194 39.2
Mapoly0020s0127 Marchantia polymorpha HOM05D004810 ORTHO05D006272 2.1e-32 143.3 206 41.3
SHI15450 Sapria himalayana HOM05D000105 ORTHO05D000023 4.7e-32 142.1 175 41.7
SEGI_37781 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 9.9e-30 134.4 180 42.2
FAN10G1333 Fragaria x ananassa HOM05D004810 ORTHO05D006272 2.9e-29 132.9 176 40.9
SMO137G0268 Selaginella moellendorffii HOM05D004810 ORTHO05D006272 1.4e-23 114.0 171 39.2
Zm00001eb241980 Zea mays HOM05D004810 ORTHO05D006272 1.8e-15 87.0 84 48.8
SEGI_09896 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 5.8e-14 82.0 71 56.3
C02p62710 Brassica napus HOM05D004810 ORTHO05D006272 1.9e-12 77.0 37 97.3
MCO01G012 Micromonas commoda HOM05D004810 ORTHO05D006272 8.7e-10 68.2 196 29.1
Actinidia06392 Actinidia chinensis HOM05D004810 ORTHO05D006272 1.9e-09 67.0 51 56.9


User provided reference genes

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