Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p42000 Brassica napus HOM05D007174 ORTHO05D009061 6.1e-132 474.2 242 100.0
BraA02t09135Z Brassica rapa HOM05D007174 ORTHO05D009061 6.1e-132 474.2 242 100.0
BcaC03g18123 Brassica carinata HOM05D007174 ORTHO05D009061 4.4e-130 468.0 242 98.3
BolC2t12246H Brassica oleracea HOM05D007174 ORTHO05D009061 6.3e-129 464.2 242 97.9
BcaB07g29797 Brassica carinata HOM05D007174 ORTHO05D009061 1.2e-122 443.4 242 93.8
Sp2g25310 Schrenkiella parvula HOM05D007174 ORTHO05D009061 9.2e-112 407.1 240 87.1
Thhalv10004841m.g Eutrema salsugineum HOM05D007174 ORTHO05D009061 6.2e-108 394.4 239 84.5
AL8G38920 Arabidopsis lyrata HOM05D007174 ORTHO05D009061 3.2e-104 382.1 239 82.4
AT5G62140 Arabidopsis thaliana HOM05D007174 ORTHO05D009061 1.3e-102 376.7 242 81.0
CARHR275910 Cardamine hirsuta HOM05D007174 ORTHO05D009061 8.1e-100 367.5 242 81.0
Carub.0008s2281 Capsella rubella HOM05D007174 ORTHO05D009061 3.5e-95 352.1 243 79.0
THA.LOC104826810 Tarenaya hassleriana HOM05D007174 ORTHO05D009061 7.1e-72 274.6 234 65.0
Gorai.008G280800 Gossypium raimondii HOM05D007174 ORTHO05D009061 1.7e-65 253.4 208 63.5
Ciclev10005753m.g Citrus clementina HOM05D007174 ORTHO05D009061 2.9e-65 252.7 223 59.6
Gohir.A12G261100 Gossypium hirsutum HOM05D007174 ORTHO05D009061 2.9e-65 252.7 208 63.5
Potri.012G134500 Populus trichocarpa HOM05D007174 ORTHO05D009061 2.5e-64 249.6 227 59.9
Thecc.03G169500 Theobroma cacao HOM05D007174 ORTHO05D009061 2.5e-64 249.6 218 59.6
arahy.Tifrunner.gnm1.ann1.CGP099 Arachis hypogaea HOM05D007174 ORTHO05D009061 7.1e-64 248.1 213 62.4
arahy.Tifrunner.gnm1.ann1.AW02WS Arachis hypogaea HOM05D007174 ORTHO05D009061 9.3e-64 247.7 213 62.4
COL.COLO4_14250 Corchorus olitorius HOM05D000059 ORTHO05D005093 7.9e-63 244.6 217 59.9
Manes.14G029900 Manihot esculenta HOM05D007174 ORTHO05D009061 7.9e-63 244.6 224 61.2
Eucgr.K00215 Eucalyptus grandis HOM05D007174 ORTHO05D009061 1.0e-62 244.2 228 58.8
Glyma.16G199500 Glycine max HOM05D007174 ORTHO05D009061 1.0e-62 244.2 217 59.0
Cpa.g.sc3.335 Carica papaya HOM05D007174 ORTHO05D009061 1.3e-62 243.8 238 55.9
CsaV3_3G016740 Cucumis sativus L. HOM05D007174 ORTHO05D009061 2.3e-62 243.0 199 61.3
Glyma.09G147500 Glycine max HOM05D007174 ORTHO05D009061 6.7e-62 241.5 209 60.3
FAN06G1461 Fragaria x ananassa HOM05D000059 ORTHO05D005093 8.7e-62 241.1 222 56.8
MSTRG.27141 Avicennia marina HOM05D007174 ORTHO05D009061 1.5e-61 240.4 222 57.7
QL09p015458 Quercus lobata HOM05D007174 ORTHO05D009061 1.5e-61 240.4 224 58.5
GSVIVG01010637001 Vitis vinifera HOM05D007174 ORTHO05D009061 1.5e-61 240.4 203 61.6
PGR142G4376 Punica granatum HOM05D007174 ORTHO05D009061 1.9e-61 240.0 220 55.9
Sabra12G0101100 Salix brachista HOM05D007174 ORTHO05D009061 2.5e-61 239.6 227 58.6
MD01G1195800 Malus domestica HOM05D007174 ORTHO05D009061 4.3e-61 238.8 244 52.9
Duzib205G1938 Durio zibethinus HOM05D007174 ORTHO05D009061 5.7e-61 238.4 217 57.6
FvH4_7g28911 Fragaria vesca HOM05D007174 ORTHO05D009061 5.7e-61 238.4 222 56.3
Lalb_Chr19g0131081 Lupinus albus HOM05D007174 ORTHO05D009061 7.4e-61 238.0 195 62.6
TPR.G9185 Trifolium pratense HOM05D007174 ORTHO05D009061 1.3e-60 237.3 223 57.4
MELO3C006867.2 Cucumis melo HOM05D007174 ORTHO05D009061 2.1e-60 236.5 196 60.7
Nn1g01328 Nelumbo nucifera HOM05D007174 ORTHO05D009061 2.8e-60 236.1 221 56.6
CiPaw.04G068400 Carya illinoinensis HOM05D007174 ORTHO05D009061 3.7e-60 235.7 223 57.8
TAR374G0585 Trochodendron aralioides HOM05D007174 ORTHO05D009061 3.7e-60 235.7 200 62.5
MBI04_g40843_MAGBIO Magnolia biondii HOM05D007174 ORTHO05D009061 6.2e-60 235.0 234 53.8
Medtr6g465290 Medicago truncatula HOM05D007174 ORTHO05D009061 8.2e-60 234.6 223 56.1
Phvul.004G122400 Phaseolus vulgaris HOM05D007174 ORTHO05D009061 8.2e-60 234.6 217 57.6
Psat1g105240 Pisum sativum HOM05D007174 ORTHO05D009061 8.2e-60 234.6 220 57.3
ClCG05G007760 Citrullus lanatus HOM05D002642 ORTHO05D002834 3.1e-59 232.6 199 59.8
Dinv35170 Davidia involucrata HOM05D007174 ORTHO05D009061 3.1e-59 232.6 224 55.8
Sed0014335 Sechium edule HOM05D002642 ORTHO05D002834 4.1e-59 232.3 203 59.1
VMungo0464G0116 Vigna mungo HOM05D007174 ORTHO05D009061 4.1e-59 232.3 208 58.7
FAN03G3394 Fragaria x ananassa HOM05D000059 ORTHO05D005093 5.3e-59 231.9 222 54.5
FAN01G2691 Fragaria x ananassa HOM05D000059 ORTHO05D005093 9.0e-59 231.1 222 54.1
Aqoxy7G00468 Aquilegia oxysepala HOM05D007174 ORTHO05D009061 1.5e-58 230.3 243 52.7
CANSAT21G1580 Cannabis sativa HOM05D007174 ORTHO05D009061 1.5e-58 230.3 237 53.6
CSS0030546 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 1.0e-57 227.6 197 58.9
Lj1A990G55 Lonicera japonica HOM05D007174 ORTHO05D009061 1.0e-57 227.6 223 56.1
TWI23G0481 Tripterygium wilfordii HOM05D007174 ORTHO05D009061 1.0e-57 227.6 218 56.0
Lj2g0011010 Lotus japonicus HOM05D007174 ORTHO05D009061 1.7e-57 226.9 217 55.3
FAN03G1635 Fragaria x ananassa HOM05D000059 ORTHO05D005093 2.2e-57 226.5 241 51.9
Rhsim09G0195900 Rhododendron simsii HOM05D007174 ORTHO05D009061 2.2e-57 226.5 216 56.5
Migut.F00385 Erythranthe guttata HOM05D007174 ORTHO05D009061 2.9e-57 226.1 191 60.2
Prupe.2G289100 Prunus persica HOM05D007174 ORTHO05D009061 2.9e-57 226.1 223 55.2
CSS0008795 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 6.5e-57 224.9 192 59.9
EL10Ac3g05680 Beta vulgaris HOM05D007174 ORTHO05D009061 1.1e-56 224.2 214 55.6
RcHm_v2.0_Chr1g0376581 Rosa chinensis HOM05D007174 ORTHO05D009061 1.4e-56 223.8 214 56.1
SalBow4G1508 Salvia bowleyana HOM05D007174 ORTHO05D009061 1.4e-56 223.8 229 55.9
CSS0029278 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 1.9e-56 223.4 238 50.8
FAN10G2932 Fragaria x ananassa HOM05D000059 ORTHO05D005093 1.9e-56 223.4 222 54.1
CAN.G548.22 Capsicum annuum HOM05D007174 ORTHO05D009061 4.2e-56 222.2 241 49.8
Lj6g0017578 Lotus japonicus HOM05D007174 ORTHO05D009061 4.2e-56 222.2 217 54.4
vmacro09863 Vaccinium macrocarpon HOM05D007174 ORTHO05D009061 4.2e-56 222.2 216 55.1
AUR62016040 Chenopodium quinoa HOM05D007174 ORTHO05D009061 5.5e-56 221.9 211 55.9
Atru.chr1.537 Acer truncatum HOM05D007174 ORTHO05D009061 2.1e-55 219.9 221 55.2
Dinv28496 Davidia involucrata HOM05D000059 ORTHO05D005093 2.1e-55 219.9 215 56.7
DCAR_018153 Daucus carota HOM05D007174 ORTHO05D009061 2.7e-55 219.5 219 54.3
HanXRQChr15g0473391 Helianthus annuus HOM05D000003 ORTHO05D000004 3.5e-55 219.2 206 56.8
Nitab4.5_0000832g0170 Nicotiana tabacum HOM05D007174 ORTHO05D009061 3.5e-55 219.2 241 49.8
Nitab4.5_0008764g0010 Nicotiana tabacum HOM05D007174 ORTHO05D009061 1.0e-54 217.6 241 49.8
Sopen03g005220 Solanum pennellii HOM05D007174 ORTHO05D009061 1.3e-54 217.2 241 50.2
ATR0757G135 Amborella trichopoda HOM05D007174 ORTHO05D009061 1.8e-54 216.9 214 54.2
PGSC0003DMG400014262 Solanum tuberosum HOM05D007174 ORTHO05D009061 3.9e-54 215.7 234 50.0
Peaxi162Scf00648g00220 Petunia axillaris HOM05D007174 ORTHO05D009061 5.1e-54 215.3 232 51.3
Lsat_1_v5_gn_9_53840 Lactuca sativa HOM05D007174 ORTHO05D009061 8.7e-54 214.5 213 54.5
Os02g0677600 Oryza sativa ssp. japonica HOM05D007174 ORTHO05D009061 1.9e-53 213.4 189 57.1
Haze_13772 Corylus avellana HOM05D007174 ORTHO05D009061 2.2e-52 209.9 205 54.6
arahy.Tifrunner.gnm1.ann1.09T8EW Arachis hypogaea HOM05D007174 ORTHO05D009061 3.7e-52 209.1 189 58.7
SGA_v2.0_scaffold2G01087 Striga asiatica HOM05D007174 ORTHO05D009061 1.1e-51 207.6 235 51.5
Zm00001eb187200 Zea mays HOM05D007174 ORTHO05D009061 1.8e-51 206.8 191 55.5
Cc02_g03460 Coffea canephora HOM05D007174 ORTHO05D009061 6.9e-51 204.9 192 53.1
CSS0030220 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 1.3e-49 200.7 197 55.3
Actinidia03101 Actinidia chinensis HOM05D007174 ORTHO05D009061 2.2e-49 199.9 200 53.0
Sc25g0000350 Simmondsia chinensis HOM05D007174 ORTHO05D009061 1.9e-48 196.8 240 50.0
SEGI_06842 Sequoiadendron giganteum HOM05D007174 ORTHO05D009061 1.0e-46 191.0 185 53.0
Oeu030133.1 Olea europaea HOM05D007174 ORTHO05D009061 4.3e-45 185.7 144 61.8
ECA232G4749 Erigeron canadensis HOM05D007174 ORTHO05D009061 2.2e-44 183.3 139 64.0
arahy.Tifrunner.gnm1.ann1.JY00AE Arachis hypogaea HOM05D007174 ORTHO05D009061 4.8e-44 182.2 201 50.7
Mapoly0145s0018 Marchantia polymorpha HOM05D007174 ORTHO05D009061 1.1e-43 181.0 204 49.0
Pp3c13_6960 Physcomitrium patens HOM05D007174 ORTHO05D009061 6.5e-41 171.8 182 48.4
SMO137G0111 Selaginella moellendorffii HOM05D007174 ORTHO05D009061 2.3e-38 163.3 204 45.6
unitig_747.g21761 Utricularia gibba HOM05D007174 ORTHO05D009061 6.7e-38 161.8 210 44.8
AagrBONN_evm.TU.Sc2ySwM_228.5753 Anthoceros agrestis HOM05D007174 ORTHO05D009061 4.4e-37 159.1 190 43.7
Pp3c4_22170 Physcomitrium patens HOM05D007174 ORTHO05D009061 7.4e-37 158.3 200 43.5
Gohir.D12G262000 Gossypium hirsutum HOM05D007174 ORTHO05D009061 2.8e-36 156.4 207 45.4
Sc13g0008390 Simmondsia chinensis HOM05D007174 ORTHO05D009061 6.3e-36 155.2 187 46.0
CBR_g53539 Chara braunii HOM05D007174 ORTHO05D009061 1.1e-35 154.5 173 47.4
EL10Ac3g05682 Beta vulgaris HOM05D007174 ORTHO05D009061 9.4e-32 141.4 216 40.7
arahy.Tifrunner.gnm1.ann1.U0QS20 Arachis hypogaea HOM05D007174 ORTHO05D009061 5.0e-25 119.0 180 43.3
Cre01.g019600 Chlamydomonas reinhardtii HOM05D007174 ORTHO05D009061 1.5e-24 117.5 180 40.6
Sc13g0008380 Simmondsia chinensis HOM05D007174 ORTHO05D009061 7.2e-24 115.2 168 39.3
Aa31LG11G1430 Aethionema arabicum HOM05D007174 ORTHO05D009061 6.1e-23 112.1 66 78.8
AUR62021246 Chenopodium quinoa HOM05D007174 ORTHO05D009061 1.0e-22 111.3 89 61.8
Solyc03g026330.4 Solanum lycopersicum HOM05D007174 ORTHO05D009061 2.2e-20 103.6 147 42.2
CDE01G0613 Ceratophyllum demersum HOM05D007174 ORTHO05D009061 1.7e-17 94.0 116 46.6
arahy.Tifrunner.gnm1.ann1.BIF85U Arachis hypogaea HOM05D007174 ORTHO05D009061 3.8e-17 92.8 83 54.2
BraA06t25829Z Brassica rapa HOM05D014866 ORTHO05D022047 8.8e-14 81.6 107 48.6
MCO06G097 Micromonas commoda HOM05D007174 ORTHO05D009061 7.5e-13 78.6 207 30.4
HanXRQChr15g0482681 Helianthus annuus HOM05D007174 ORTHO05D009061 1.1e-11 74.7 54 68.5
SEGI_30770 Sequoiadendron giganteum HOM05D000501 ORTHO05D009061 1.1e-11 74.7 79 51.9
Pp3c26_1960 Physcomitrium patens HOM05D007174 ORTHO05D009061 1.4e-11 74.3 103 36.9
C03p64800 Brassica napus HOM05D014866 ORTHO05D022047 2.7e-10 70.1 53 67.9
BolC3t18743H Brassica oleracea HOM05D014866 ORTHO05D022047 2.7e-10 70.1 53 67.9


User provided reference genes

Program Settings