Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p41420 Brassica napus HOM05D009441 ORTHO05D010605 1.2e-52 209.5 99 100.0
BraA02t09085Z Brassica rapa HOM05D009441 ORTHO05D010605 7.5e-52 206.8 99 98.0
C02p61360 Brassica napus HOM05D009441 ORTHO05D010605 4.8e-51 204.1 99 97.0
BolC2t12185H Brassica oleracea HOM05D009441 ORTHO05D010605 1.3e-48 196.1 99 92.9
BolC2t12184H Brassica oleracea HOM05D009441 ORTHO05D010605 3.2e-18 95.1 73 53.4
BcaC03g18076 Brassica carinata HOM05D009441 ORTHO05D010605 7.0e-18 94.0 72 54.2
A02p41410 Brassica napus HOM05D009441 ORTHO05D010605 1.6e-17 92.8 73 50.7
BcaC03g18077 Brassica carinata HOM05D009441 ORTHO05D010605 6.0e-17 90.9 45 93.3
BraA02t09084Z Brassica rapa HOM05D009441 ORTHO05D010605 6.0e-17 90.9 73 50.7
AT5G61110 Arabidopsis thaliana HOM05D009441 ORTHO05D010605 3.0e-16 88.6 80 51.2
Sp6g34940 Schrenkiella parvula HOM05D009441 ORTHO05D010605 3.9e-16 88.2 77 50.6
AT5G08005 Arabidopsis thaliana HOM05D009441 ORTHO05D010605 6.6e-16 87.4 64 54.7
AT5G61100 Arabidopsis thaliana HOM05D009441 ORTHO05D010605 1.9e-15 85.9 76 46.1
Aa31LG3G18530 Aethionema arabicum HOM05D000016 ORTHO05D000487 3.3e-15 85.1 72 47.2
AL6G18350 Arabidopsis lyrata HOM05D009441 ORTHO05D010605 4.3e-15 84.7 64 53.1
Carub.0008s2177 Capsella rubella HOM05D009441 ORTHO05D010605 4.3e-15 84.7 50 64.0
CARHR274790 Cardamine hirsuta HOM05D009441 ORTHO05D010605 7.3e-15 84.0 50 66.0
AL8G37750 Arabidopsis lyrata HOM05D009441 ORTHO05D010605 9.5e-15 83.6 73 52.1
AL8G37740 Arabidopsis lyrata HOM05D009441 ORTHO05D010605 6.2e-14 80.9 73 45.2
A03p46770 Brassica napus HOM05D007909 ORTHO05D010605 1.4e-13 79.7 75 46.7
BraA03t13799Z Brassica rapa HOM05D007909 ORTHO05D010605 1.4e-13 79.7 75 46.7
C09p68910 Brassica napus HOM05D009441 ORTHO05D010605 1.8e-13 79.3 61 50.8
C07p44810 Brassica napus HOM05D007909 ORTHO05D010605 2.3e-13 79.0 60 51.7
Carub.0008s2178 Capsella rubella HOM05D009441 ORTHO05D010605 3.1e-13 78.6 58 53.4
A10p28620 Brassica napus HOM05D009441 ORTHO05D010605 4.0e-13 78.2 60 51.7
BcaB07g34219 Brassica carinata HOM05D007909 ORTHO05D010605 6.8e-13 77.4 77 44.2
Carub.0006s0689 Capsella rubella HOM05D009441 ORTHO05D010605 6.8e-13 77.4 57 47.4
BraA10t44911Z Brassica rapa HOM05D009441 ORTHO05D010605 2.6e-12 75.5 55 54.5
BcaC06g33178 Brassica carinata HOM05D007909 ORTHO05D010605 3.4e-12 75.1 57 52.6
Sp2g24365 Schrenkiella parvula HOM05D007909 ORTHO05D010605 3.4e-12 75.1 61 45.9
CARHR205180 Cardamine hirsuta HOM05D009441 ORTHO05D010605 7.5e-12 73.9 52 51.9
Medtr3g025330 Medicago truncatula HOM05D001093 ORTHO05D010605 4.9e-11 71.2 52 50.0
Duzib205G1796 Durio zibethinus HOM05D001093 ORTHO05D010605 8.3e-11 70.5 77 37.7
Duzib084G0418 Durio zibethinus HOM05D000539 ORTHO05D000233 1.1e-10 70.1 53 41.5
Gohir.A12G182300 Gossypium hirsutum HOM05D004287 ORTHO05D004569 1.4e-10 69.7 74 36.5
Ciclev10020157m.g Citrus clementina HOM05D001093 ORTHO05D010605 2.4e-10 68.9 54 50.0
QL10p019356 Quercus lobata HOM05D001093 ORTHO05D010605 2.4e-10 68.9 54 42.6
Gohir.D12G185200 Gossypium hirsutum HOM05D004287 ORTHO05D004569 3.2e-10 68.6 74 35.1
Gorai.008G198600 Gossypium raimondii HOM05D004287 ORTHO05D004569 3.2e-10 68.6 74 35.1
Hund02591 Selenicereus undatus HOM05D001093 ORTHO05D000743 5.4e-10 67.8 50 50.0
vmacro16499 Vaccinium macrocarpon HOM05D001093 ORTHO05D000743 5.4e-10 67.8 49 51.0
Atru.chr9.429 Acer truncatum HOM05D007909 ORTHO05D000743 7.1e-10 67.4 49 51.0
Manes.06G085200 Manihot esculenta HOM05D007909 ORTHO05D010605 7.1e-10 67.4 60 40.0
A02p41400 Brassica napus HOM05D007909 ORTHO05D010605 1.2e-09 66.6 77 36.4
Rhsim12G0151100 Rhododendron simsii HOM05D001093 ORTHO05D000743 1.6e-09 66.2 64 43.8
Lj1g0000797 Lotus japonicus HOM05D007909 ORTHO05D000743 2.1e-09 65.9 64 42.2
Prupe.5G204000 Prunus persica HOM05D001093 ORTHO05D010605 2.7e-09 65.5 47 46.8
Dinv22785 Davidia involucrata HOM05D001093 ORTHO05D000743 3.5e-09 65.1 53 47.2
Actinidia16122 Actinidia chinensis HOM05D001093 ORTHO05D000743 1.0e-08 63.5 47 48.9
EL10Ac5g11120 Beta vulgaris HOM05D015602 ORTHO05D006373 1.0e-08 63.5 78 41.0
CARHR274800 Cardamine hirsuta HOM05D009441 ORTHO05D010605 1.0e-08 63.5 37 67.6
Potri.014G040100 Populus trichocarpa HOM05D007909 ORTHO05D000743 1.0e-08 63.5 50 48.0
TPR.G12267 Trifolium pratense HOM05D008195 ORTHO05D010605 1.3e-08 63.2 51 45.1
ECA247G2835 Erigeron canadensis HOM05D001093 ORTHO05D000743 1.7e-08 62.8 62 40.3
Lsat_1_v5_gn_1_13501 Lactuca sativa HOM05D001093 ORTHO05D010605 1.7e-08 62.8 50 44.0
Nn3g17441 Nelumbo nucifera HOM05D001093 ORTHO05D000743 1.7e-08 62.8 59 40.7
MBI19_g34071_MAGBIO Magnolia biondii HOM05D001093 ORTHO05D010605 3.0e-08 62.0 52 51.9
MBI19_g36253_MAGBIO Magnolia biondii HOM05D001093 ORTHO05D010605 3.0e-08 62.0 52 51.9
Dinv17406 Davidia involucrata HOM05D001093 ORTHO05D000743 6.6e-08 60.8 53 39.6
PGSC0003DMG400020472 Solanum tuberosum HOM05D008195 ORTHO05D000743 6.6e-08 60.8 60 40.0
FAN17G0179 Fragaria x ananassa HOM05D000009 ORTHO05D000008 1.5e-07 59.7 66 40.9
Sabra14G0029200 Salix brachista HOM05D007909 ORTHO05D000743 1.5e-07 59.7 50 46.0
EL10Ac5g11122 Beta vulgaris HOM05D001093 ORTHO05D000743 1.9e-07 59.3 96 35.4
CsaV3_1G033720 Cucumis sativus L. HOM05D034807 ORTHO05D034786 2.5e-07 58.9 56 35.7
FAN07G2119 Fragaria x ananassa HOM05D008195 ORTHO05D010605 2.5e-07 58.9 65 40.0
FvH4_4g13550 Fragaria vesca HOM05D008195 ORTHO05D010605 3.3e-07 58.5 66 40.9
MSTRG.4449 Avicennia marina HOM05D001093 ORTHO05D010605 4.3e-07 58.2 47 44.7
Sc13g0010990 Simmondsia chinensis HOM05D001093 ORTHO05D000743 4.3e-07 58.2 72 33.3
Aqoxy3G03628 Aquilegia oxysepala HOM05D001093 ORTHO05D000743 5.6e-07 57.8 51 43.1
CANSAT80G0158 Cannabis sativa HOM05D000539 ORTHO05D000233 5.6e-07 57.8 76 38.2
PGSC0003DMG400037001 Solanum tuberosum HOM05D008195 ORTHO05D000743 5.6e-07 57.8 57 38.6
HPP92_011027 Vanilla planifolia HOM05D009441 ORTHO05D010605 5.6e-07 57.8 62 35.5
PSO675G5193 Papaver somniferum HOM05D001093 ORTHO05D000743 7.3e-07 57.4 48 41.7
Potri.019G041900 Populus trichocarpa HOM05D001093 ORTHO05D000743 7.3e-07 57.4 75 34.7
Sabra03G0060600 Salix brachista HOM05D001093 ORTHO05D000743 7.3e-07 57.4 54 42.6
Hund09906 Selenicereus undatus HOM05D009441 ORTHO05D010605 7.3e-07 57.4 89 32.6
PGSC0003DMG400026134 Solanum tuberosum HOM05D008195 ORTHO05D000743 7.3e-07 57.4 64 35.9
PSO541G3559 Papaver somniferum HOM05D001093 ORTHO05D000743 9.5e-07 57.0 47 42.6
CSS0022126 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 1.2e-06 56.6 48 45.8
CSS0033439 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 1.2e-06 56.6 48 45.8
Cc08_g02720 Coffea canephora HOM05D001093 ORTHO05D000743 1.2e-06 56.6 51 43.1
HanXRQChr02g0044731 Helianthus annuus HOM05D001093 ORTHO05D000743 1.2e-06 56.6 49 42.9
Thhalv10020044m.g Eutrema salsugineum HOM05D001093 ORTHO05D000743 1.6e-06 56.2 49 44.9
FvH4_5g13940 Fragaria vesca HOM05D008195 ORTHO05D000743 1.6e-06 56.2 63 42.9
Glyma.04G163100 Glycine max HOM05D007909 ORTHO05D000743 2.1e-06 55.8 54 38.9
RcHm_v2.0_Chr7g0183021 Rosa chinensis HOM05D007909 ORTHO05D000743 2.1e-06 55.8 59 40.7
Sed0000006 Sechium edule HOM05D000791 ORTHO05D001863 2.1e-06 55.8 49 40.8
TWI60G1066 Tripterygium wilfordii HOM05D001093 ORTHO05D000743 2.1e-06 55.8 50 36.0
BcaNung04315 Brassica carinata HOM05D001093 ORTHO05D000743 2.8e-06 55.5 49 42.9
PGSC0003DMG400041231 Solanum tuberosum HOM05D008195 ORTHO05D010950 2.8e-06 55.5 76 32.9
CAN.G1131.39 Capsicum annuum HOM05D001093 ORTHO05D000743 3.6e-06 55.1 54 37.0
Potri.003G091000 Populus trichocarpa HOM05D001093 ORTHO05D000743 3.6e-06 55.1 52 42.3
Sopen03g034220 Solanum pennellii HOM05D008195 ORTHO05D000743 3.6e-06 55.1 60 36.7
Zm00001eb268880 Zea mays HOM05D001093 ORTHO05D000743 4.7e-06 54.7 54 37.0
CiPaw.05G213100 Carya illinoinensis HOM05D001093 ORTHO05D000743 6.2e-06 54.3 72 34.7
ClCG04G011830 Citrullus lanatus HOM05D000020 ORTHO05D000743 6.2e-06 54.3 55 41.8
Solyc06g066140.3 Solanum lycopersicum HOM05D008195 ORTHO05D000743 6.2e-06 54.3 79 29.1
Solyc06g066200.2 Solanum lycopersicum HOM05D008195 ORTHO05D000743 6.2e-06 54.3 71 33.8
TWI60G0473 Tripterygium wilfordii HOM05D007909 ORTHO05D000743 6.2e-06 54.3 55 36.4
BolC1t05866H Brassica oleracea HOM05D001093 ORTHO05D000743 8.1e-06 53.9 49 40.8
Prupe.5G204200 Prunus persica HOM05D007909 ORTHO05D000743 8.1e-06 53.9 45 40.0


User provided reference genes

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