Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 2.0e-112 409.1 199 100.0
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 2.2e-111 405.6 199 99.0
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 4.3e-107 391.3 199 95.5
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 4.3e-107 391.3 199 95.5
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 3.6e-106 388.3 199 95.0
BcaB07g29862 Brassica carinata HOM05D006499 ORTHO05D007874 9.9e-104 380.2 195 93.3
Sp2g23920 Schrenkiella parvula HOM05D006499 ORTHO05D007874 2.4e-97 359.0 199 87.4
Thhalv10005281m.g Eutrema salsugineum HOM05D006499 ORTHO05D007874 1.1e-94 350.1 195 86.2
CARHR190310 Cardamine hirsuta HOM05D006499 ORTHO05D007874 7.4e-91 337.4 195 83.6
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 2.6e-88 328.9 198 81.8
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 7.9e-85 317.4 197 80.2
Aa31LG11G2680 Aethionema arabicum HOM05D006499 ORTHO05D007874 2.3e-84 315.8 199 77.4
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 5.1e-84 314.7 194 79.4
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 2.5e-83 312.4 198 77.8
THA.LOC104800852 Tarenaya hassleriana HOM05D006499 ORTHO05D007874 6.2e-82 307.8 199 74.9
Ciclev10032745m.g Citrus clementina HOM05D006499 ORTHO05D007874 3.5e-77 292.0 193 73.6
Thecc.02G158700 Theobroma cacao HOM05D006499 ORTHO05D007874 3.0e-76 288.9 196 74.0
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 2.5e-75 285.8 196 71.4
Gohir.D02G188400 Gossypium hirsutum HOM05D006499 ORTHO05D007874 4.3e-75 285.0 194 72.2
Gorai.005G211100 Gossypium raimondii HOM05D006499 ORTHO05D007874 4.3e-75 285.0 194 72.2
Potri.003G003300 Populus trichocarpa HOM05D006499 ORTHO05D007874 9.6e-75 283.9 195 71.8
Gohir.A03G165200 Gossypium hirsutum HOM05D006499 ORTHO05D007874 1.6e-74 283.1 194 72.2
Duzib132G0016 Durio zibethinus HOM05D006499 ORTHO05D007874 3.7e-74 282.0 192 72.4
Cpa.g.sc92.93 Carica papaya HOM05D006499 ORTHO05D007874 4.8e-74 281.6 197 69.0
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 4.5e-72 275.0 199 68.8
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 7.6e-72 274.2 196 69.4
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 1.0e-71 273.9 196 69.4
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 5.0e-71 271.6 197 69.0
MD16G1003500 Malus domestica HOM05D006499 ORTHO05D007874 1.1e-70 270.4 187 70.1
Rhsim05G0006600 Rhododendron simsii HOM05D006499 ORTHO05D007874 1.9e-70 269.6 191 68.6
RcHm_v2.0_Chr4g0446811 Rosa chinensis HOM05D006499 ORTHO05D007874 1.9e-70 269.6 196 67.9
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 9.3e-70 267.3 196 65.3
Glyma.09G283200 Glycine max HOM05D006499 ORTHO05D007874 1.2e-69 266.9 193 68.9
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 1.6e-69 266.5 193 68.9
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 1.6e-69 266.5 191 70.2
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 2.7e-69 265.8 191 69.1
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 3.6e-69 265.4 198 67.7
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 6.1e-69 264.6 193 67.9
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 7.9e-69 264.2 194 66.5
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 7.9e-69 264.2 193 67.9
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 7.9e-69 264.2 195 67.7
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 7.9e-69 264.2 195 67.7
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 1.3e-68 263.5 190 67.4
Lalb_Chr04g0258971 Lupinus albus HOM05D006499 ORTHO05D007874 1.8e-68 263.1 198 66.7
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 2.3e-68 262.7 198 65.7
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 2.3e-68 262.7 197 65.0
Medtr1g038530 Medicago truncatula HOM05D006499 ORTHO05D007874 3.0e-68 262.3 194 67.0
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 3.9e-68 261.9 190 66.3
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 5.1e-68 261.5 193 65.8
Psat6g099520 Pisum sativum HOM05D006499 ORTHO05D007874 5.1e-68 261.5 191 68.6
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 5.1e-68 261.5 197 64.5
Nitab4.5_0000069g0350 Nicotiana tabacum HOM05D006499 ORTHO05D007874 6.7e-68 261.2 191 68.6
Lalb_Chr10g0094911 Lupinus albus HOM05D006499 ORTHO05D007874 1.5e-67 260.0 185 69.2
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 1.9e-67 259.6 191 68.1
Actinidia13714 Actinidia chinensis HOM05D006499 ORTHO05D007874 2.5e-67 259.2 182 71.4
arahy.Tifrunner.gnm1.ann1.U0P7JC Arachis hypogaea HOM05D000717 ORTHO05D000555 2.5e-67 259.2 189 67.2
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 2.5e-67 259.2 192 67.7
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 3.3e-67 258.8 195 66.7
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 3.3e-67 258.8 189 68.8
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 7.4e-67 257.7 188 68.1
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 1.3e-66 256.9 189 68.3
FAN07G1092 Fragaria x ananassa HOM05D006499 ORTHO05D007874 1.3e-66 256.9 179 69.8
Medtr1g037830 Medicago truncatula HOM05D006499 ORTHO05D007874 1.6e-66 256.5 194 66.5
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 2.8e-66 255.8 191 66.0
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 3.7e-66 255.4 194 66.0
Oeu012342.1 Olea europaea HOM05D006499 ORTHO05D007874 3.7e-66 255.4 197 64.0
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 1.4e-65 253.4 191 65.4
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 3.1e-65 252.3 191 65.4
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 6.9e-65 251.1 190 64.7
arahy.Tifrunner.gnm1.ann1.BULB93 Arachis hypogaea HOM05D006499 ORTHO05D007874 2.0e-64 249.6 179 68.2
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 2.0e-64 249.6 193 64.2
ECA236G1709 Erigeron canadensis HOM05D006499 ORTHO05D007874 7.7e-64 247.7 194 63.9
FAN12G4256 Fragaria x ananassa HOM05D006499 ORTHO05D007874 3.8e-63 245.4 176 69.3
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 3.8e-63 245.4 188 64.9
EL10Ac9g22960 Beta vulgaris HOM05D006499 ORTHO05D007874 8.5e-63 244.2 198 62.6
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 1.1e-62 243.8 192 61.5
Lj6P712T24 Lonicera japonica HOM05D006499 ORTHO05D007874 3.2e-62 242.3 167 70.1
AUR62032973 Chenopodium quinoa HOM05D006499 ORTHO05D007874 4.2e-62 241.9 199 60.3
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 5.5e-62 241.5 191 61.8
COL.COLO4_06169 Corchorus olitorius HOM05D006499 ORTHO05D007874 9.4e-62 240.7 169 71.0
Lj6P717T75 Lonicera japonica HOM05D006499 ORTHO05D007874 1.2e-61 240.4 167 69.5
TPR.G29797 Trifolium pratense HOM05D006499 ORTHO05D007874 1.2e-61 240.4 199 61.8
CSS0024171 Camellia sinensis var. sinensis HOM05D006499 ORTHO05D007874 2.0e-59 233.0 192 62.0
AUR62017708 Chenopodium quinoa HOM05D006499 ORTHO05D007874 4.5e-56 221.9 175 61.1
Zm00001eb076800 Zea mays HOM05D006499 ORTHO05D007874 1.3e-55 220.3 195 56.9
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 5.0e-55 218.4 185 58.4
Pp3c12_9010 Physcomitrium patens HOM05D006499 ORTHO05D007874 8.8e-52 207.6 191 53.4
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 4.4e-51 205.3 189 56.1
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 1.1e-49 200.7 193 52.8
Sc06g0006830 Simmondsia chinensis HOM05D006499 ORTHO05D007874 4.5e-48 195.3 149 65.8
GSVIVG01026240001 Vitis vinifera HOM05D006499 ORTHO05D007874 1.1e-46 190.7 196 54.1
SHI02178 Sapria himalayana HOM05D006499 ORTHO05D007874 1.2e-45 187.2 191 52.4
Mapoly0180s0008 Marchantia polymorpha HOM05D006499 ORTHO05D007874 1.4e-44 183.7 189 49.2
CBR_g16977 Chara braunii HOM05D006499 ORTHO05D007874 4.8e-42 175.3 198 47.0
TAR622G0494 Trochodendron aralioides HOM05D006499 ORTHO05D007874 8.2e-42 174.5 165 56.4
A03p62810 Brassica napus HOM05D006499 ORTHO05D007874 2.7e-32 142.9 78 83.3
BraA03t15356Z Brassica rapa HOM05D006499 ORTHO05D007874 2.7e-32 142.9 78 83.3
QL04p029592 Quercus lobata HOM05D006499 ORTHO05D007874 5.9e-32 141.7 93 74.2
BcaC03g13135 Brassica carinata HOM05D006499 ORTHO05D007874 3.8e-31 139.0 72 88.9
SEGI_40434 Sequoiadendron giganteum HOM05D006499 ORTHO05D007874 4.2e-30 135.6 96 69.8
CAN.G655.2 Capsicum annuum HOM05D006499 ORTHO05D007874 1.8e-28 130.2 112 57.1
QL05p044270 Quercus lobata HOM05D000125 ORTHO05D007874 5.2e-28 128.6 109 63.3
CAN.G2.1 Capsicum annuum HOM05D006499 ORTHO05D007874 2.6e-27 126.3 77 77.9
arahy.Tifrunner.gnm1.ann1.YHJY2A Arachis hypogaea HOM05D006499 ORTHO05D007874 9.2e-25 117.9 81 70.4
Medtr1g037850 Medicago truncatula HOM05D006499 ORTHO05D007874 9.8e-19 97.8 117 44.4
Nn5g28518 Nelumbo nucifera HOM05D006499 ORTHO05D007874 3.7e-18 95.9 94 52.1
PGR044G1944 Punica granatum HOM05D006499 ORTHO05D007874 2.0e-16 90.1 162 40.1
Ca_29435_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 4.0e-12 75.9 165 33.3
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 3.7e-10 69.3 171 29.8
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 3.7e-10 69.3 170 27.6
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 6.4e-10 68.6 171 29.2
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 8.3e-10 68.2 180 28.3
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 1.9e-09 67.0 189 27.5
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 5.4e-09 65.5 171 29.2
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 7.0e-09 65.1 170 27.6
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 7.0e-09 65.1 171 28.7
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 9.2e-09 64.7 164 28.7
Pp3s30_567 Physcomitrium patens HOM05D006499 ORTHO05D007874 1.2e-08 64.3 184 32.6
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 1.6e-08 63.9 178 27.5
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 2.0e-08 63.5 171 26.3
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 6.0e-08 62.0 185 26.5
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 6.0e-08 62.0 174 27.6
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 7.8e-08 61.6 174 28.2
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 1.0e-07 61.2 171 27.5
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 1.0e-07 61.2 166 28.9
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 1.0e-07 61.2 198 27.3
MCO13G030 Micromonas commoda HOM05D006499 ORTHO05D007874 1.3e-07 60.8 179 25.1
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 1.3e-07 60.8 174 27.6
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 1.7e-07 60.5 183 26.8
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 1.7e-07 60.5 173 24.9
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 3.9e-07 59.3 171 27.5
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 5.0e-07 58.9 175 26.3
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 6.6e-07 58.5 174 28.2
Pp3s30_680 Physcomitrium patens HOM05D006499 ORTHO05D007874 6.6e-07 58.5 142 31.0
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 6.6e-07 58.5 183 27.3
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 1.1e-06 57.8 184 26.1
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 1.1e-06 57.8 147 25.9
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 1.1e-06 57.8 169 26.6
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 1.5e-06 57.4 173 28.3
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 1.5e-06 57.4 171 28.1
Nn6g33750 Nelumbo nucifera HOM05D006499 ORTHO05D007874 1.9e-06 57.0 50 52.0
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 1.9e-06 57.0 171 26.9
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 2.5e-06 56.6 171 26.3
Cre17.g706800 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 2.5e-06 56.6 179 26.8
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 2.5e-06 56.6 148 27.0
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 3.3e-06 56.2 170 27.6
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 3.3e-06 56.2 180 26.7
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 3.3e-06 56.2 180 26.7
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 3.3e-06 56.2 172 27.3
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 3.3e-06 56.2 176 25.6
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 4.3e-06 55.8 164 26.2
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 4.3e-06 55.8 171 27.5
Peaxi162Scf00015g00131 Petunia axillaris HOM05D005658 ORTHO05D006989 4.3e-06 55.8 102 32.4
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 4.3e-06 55.8 191 27.7
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 5.6e-06 55.5 188 29.3
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 5.6e-06 55.5 171 25.7
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 7.3e-06 55.1 148 25.7
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 7.3e-06 55.1 171 26.9
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 7.3e-06 55.1 170 25.9
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 7.3e-06 55.1 169 27.8
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 7.3e-06 55.1 174 27.6
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 9.5e-06 54.7 173 26.6
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 9.5e-06 54.7 171 27.5
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 9.5e-06 54.7 171 26.3


User provided reference genes

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