Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p40520 Brassica napus HOM05D011679 ORTHO05D012451 2.2e-108 395.6 192 100.0
BraA02t09010Z Brassica rapa HOM05D011679 ORTHO05D012451 3.6e-103 378.3 198 93.9
A02p40400 Brassica napus HOM05D011679 ORTHO05D012451 1.8e-102 375.9 192 95.8
A02p40630 Brassica napus HOM05D011679 ORTHO05D012451 2.9e-100 368.6 192 94.3
BolC2t12090H Brassica oleracea HOM05D011679 ORTHO05D012451 3.9e-65 251.9 172 73.3
C02p60340 Brassica napus HOM05D011679 ORTHO05D012451 4.3e-64 248.4 123 96.7
BolC2t12252H Brassica oleracea HOM05D011679 ORTHO05D012451 5.5e-43 178.3 171 56.7
BcaB07g29904 Brassica carinata HOM05D011679 ORTHO05D012451 4.8e-31 138.7 94 72.3
BcaB07g29835 Brassica carinata HOM05D011679 ORTHO05D012451 8.2e-31 137.9 103 68.0
Carub.0001s2895 Capsella rubella HOM05D011679 ORTHO05D012451 2.3e-25 119.8 168 40.5
AL3G32470 Arabidopsis lyrata HOM05D011679 ORTHO05D012451 8.9e-17 91.3 179 33.0
CARHR166160 Cardamine hirsuta HOM05D011679 ORTHO05D012451 1.5e-16 90.5 163 37.4
CARHR167770 Cardamine hirsuta HOM05D001456 ORTHO05D011781 2.3e-12 76.6 164 34.1
Carub.0004s1897 Capsella rubella HOM05D007309 ORTHO05D015909 7.3e-11 71.6 133 37.6
AL5G20620 Arabidopsis lyrata HOM05D001456 ORTHO05D019698 4.7e-10 68.9 179 29.6
AL4G34490 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 1.0e-09 67.8 169 27.8
CARHR172830 Cardamine hirsuta HOM05D001456 ORTHO05D011865 1.8e-09 67.0 133 31.6
AL5G20610 Arabidopsis lyrata HOM05D001456 ORTHO05D019698 4.0e-09 65.9 167 29.3
AL1G58410 Arabidopsis lyrata HOM05D021205 ORTHO05D010099 2.6e-08 63.2 149 30.9
Carub.0001s3469 Capsella rubella HOM05D001456 ORTHO05D010099 4.4e-08 62.4 120 34.2
A09p52590 Brassica napus HOM05D001456 ORTHO05D011781 5.8e-08 62.0 166 27.7
AL5G39260 Arabidopsis lyrata HOM05D001456 ORTHO05D012451 7.5e-08 61.6 149 34.2
C08p35340 Brassica napus HOM05D001456 ORTHO05D011781 7.5e-08 61.6 162 28.4
BolC8t51127H Brassica oleracea HOM05D001456 ORTHO05D011781 7.5e-08 61.6 162 28.4
BraA09t40689Z Brassica rapa HOM05D001456 ORTHO05D011781 9.8e-08 61.2 167 28.7
Zm00001eb328720 Zea mays HOM05D001456 ORTHO05D002799 2.9e-07 59.7 174 27.0
BolC2t06135H Brassica oleracea HOM05D007309 ORTHO05D010099 3.7e-07 59.3 131 29.8
Thhalv10006280m.g Eutrema salsugineum HOM05D014685 ORTHO05D011865 3.7e-07 59.3 117 31.6
C06p00010 Brassica napus HOM05D014685 ORTHO05D011865 6.4e-07 58.5 108 35.2
BraA09t40691Z Brassica rapa HOM05D001456 ORTHO05D011781 6.4e-07 58.5 164 27.4
PGR031G2409 Punica granatum HOM05D001456 ORTHO05D002799 8.3e-07 58.2 175 25.1
Sed0015340 Sechium edule HOM05D001456 ORTHO05D002799 8.3e-07 58.2 175 25.7
BcaC03g12956 Brassica carinata HOM05D007309 ORTHO05D010099 1.1e-06 57.8 131 29.0
A09p52620 Brassica napus HOM05D001456 ORTHO05D011781 1.1e-06 57.8 164 26.8
C02p01790 Brassica napus HOM05D007309 ORTHO05D010099 1.1e-06 57.8 131 29.0
Os07g0637200 Oryza sativa ssp. japonica HOM05D001456 ORTHO05D002799 1.1e-06 57.8 170 26.5
PGR031G1599 Punica granatum HOM05D001456 ORTHO05D002799 1.1e-06 57.8 175 25.1
PGR031G3460 Punica granatum HOM05D001456 ORTHO05D002799 1.1e-06 57.8 175 25.1
TWI59G0324 Tripterygium wilfordii HOM05D001456 ORTHO05D002799 1.4e-06 57.4 175 26.9
Thhalv10027969m.g Eutrema salsugineum HOM05D001456 ORTHO05D011781 1.9e-06 57.0 162 27.8
ClCG01G007140 Citrullus lanatus HOM05D001456 ORTHO05D002799 2.4e-06 56.6 185 25.4
AL4G34290 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 3.2e-06 56.2 185 27.0
Atru.chr5.892 Acer truncatum HOM05D001456 ORTHO05D002799 4.1e-06 55.8 175 24.6
C09p72960 Brassica napus HOM05D021205 ORTHO05D031731 4.1e-06 55.8 90 30.0
BolC9t60032H Brassica oleracea HOM05D021205 ORTHO05D031731 4.1e-06 55.8 90 30.0
BcaC03g12991 Brassica carinata HOM05D007309 ORTHO05D010099 5.4e-06 55.5 146 27.4
BolC2t06111H Brassica oleracea HOM05D007309 ORTHO05D010099 7.0e-06 55.1 140 27.9


User provided reference genes

Program Settings