Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p40350 Brassica napus HOM05D006088 ORTHO05D007281 8.3e-42 173.3 90 100.0
BcaB07g29905 Brassica carinata HOM05D006088 ORTHO05D007281 8.6e-31 136.7 125 64.0
BraA02t09012Z Brassica rapa HOM05D006088 ORTHO05D007281 1.9e-30 135.6 125 64.0
A02p40650 Brassica napus HOM05D006088 ORTHO05D007281 3.3e-30 134.8 125 64.0
Sp2g22980 Schrenkiella parvula HOM05D006088 ORTHO05D007281 5.8e-27 124.0 125 61.6
BcaC03g17984 Brassica carinata HOM05D006088 ORTHO05D007281 7.5e-27 123.6 125 61.6
BcaC03g17987 Brassica carinata HOM05D006088 ORTHO05D007281 7.5e-27 123.6 125 61.6
BcaC03g17985 Brassica carinata HOM05D006088 ORTHO05D007281 9.9e-27 123.2 125 61.6
C02p60380 Brassica napus HOM05D006088 ORTHO05D007281 2.2e-26 122.1 125 60.8
BolC2t12093H Brassica oleracea HOM05D006088 ORTHO05D007281 2.2e-26 122.1 125 60.8
A02p40610 Brassica napus HOM05D006088 ORTHO05D007281 1.1e-25 119.8 94 74.5
Thhalv10004042m.g Eutrema salsugineum HOM05D006088 ORTHO05D007281 7.1e-25 117.1 125 59.2
A02p40510 Brassica napus HOM05D006088 ORTHO05D007281 1.2e-24 116.3 94 72.3
AT5G24340 Arabidopsis thaliana HOM05D006088 ORTHO05D007281 5.6e-22 107.5 125 55.2
Carub.0006s2216 Capsella rubella HOM05D006088 ORTHO05D007281 2.8e-21 105.1 125 54.4
CARHR189110 Cardamine hirsuta HOM05D006088 ORTHO05D007281 1.8e-20 102.4 125 53.6
Aa31LG11G3620 Aethionema arabicum HOM05D006088 ORTHO05D007281 9.9e-19 96.7 125 53.6
TWI39G0339 Tripterygium wilfordii HOM05D006088 ORTHO05D007281 4.6e-16 87.8 60 76.7
THA.LOC104814937 Tarenaya hassleriana HOM05D006088 ORTHO05D007281 7.8e-16 87.0 125 49.6
Atru.chr12.2268 Acer truncatum HOM05D006088 ORTHO05D007281 8.7e-15 83.6 60 75.0
Atru.chr12.2276 Acer truncatum HOM05D006088 ORTHO05D007281 8.7e-15 83.6 124 45.2
Lj1A1022T49 Lonicera japonica HOM05D006088 ORTHO05D007281 8.7e-15 83.6 124 45.2
GSVIVG01038590001 Vitis vinifera HOM05D006088 ORTHO05D007281 8.7e-15 83.6 60 75.0
QL09p007776 Quercus lobata HOM05D006088 ORTHO05D007281 1.1e-14 83.2 124 46.0
Potri.015G009500 Populus trichocarpa HOM05D006088 ORTHO05D007281 1.9e-14 82.4 60 73.3
Thecc.03G202800 Theobroma cacao HOM05D006088 ORTHO05D007281 3.3e-14 81.6 60 73.3
CiPaw.06G044500 Carya illinoinensis HOM05D006088 ORTHO05D007281 5.6e-14 80.9 60 71.7
Sc25g0000960 Simmondsia chinensis HOM05D006088 ORTHO05D007281 5.6e-14 80.9 124 42.7
Dinv29251 Davidia involucrata HOM05D006088 ORTHO05D007281 7.3e-14 80.5 60 73.3
Manes.01G039200 Manihot esculenta HOM05D006088 ORTHO05D007281 7.3e-14 80.5 60 73.3
Sabra15G0007500 Salix brachista HOM05D006088 ORTHO05D007281 7.3e-14 80.5 60 71.7
Sed0011789 Sechium edule HOM05D006088 ORTHO05D007281 7.3e-14 80.5 60 76.7
ECA238G4490 Erigeron canadensis HOM05D006088 ORTHO05D007281 9.6e-14 80.1 60 71.7
CANSAT21G0843 Cannabis sativa HOM05D006088 ORTHO05D007281 1.2e-13 79.7 60 71.7
CAN.G481.44 Capsicum annuum HOM05D006088 ORTHO05D007281 1.2e-13 79.7 123 43.1
HanXRQChr04g0100451 Helianthus annuus HOM05D006088 ORTHO05D007281 1.2e-13 79.7 60 70.0
Solyc03g082850.3 Solanum lycopersicum HOM05D006088 ORTHO05D007281 1.2e-13 79.7 123 43.1
Sopen03g022590 Solanum pennellii HOM05D006088 ORTHO05D007281 1.2e-13 79.7 123 43.1
PGSC0003DMG400018542 Solanum tuberosum HOM05D006088 ORTHO05D007281 1.2e-13 79.7 123 43.1
Duzib068G0049 Durio zibethinus HOM05D006088 ORTHO05D007281 1.6e-13 79.3 60 70.0
Oeu037044.1 Olea europaea HOM05D006088 ORTHO05D007281 1.6e-13 79.3 60 71.7
Ciclev10020182m.g Citrus clementina HOM05D006088 ORTHO05D007281 2.1e-13 79.0 60 73.3
Actinidia34240 Actinidia chinensis HOM05D006088 ORTHO05D007281 2.8e-13 78.6 60 70.0
Cpa.g.sc3.114 Carica papaya HOM05D006088 ORTHO05D007281 2.8e-13 78.6 60 75.0
CSS0005298 Camellia sinensis var. sinensis HOM05D006088 ORTHO05D007281 4.7e-13 77.8 60 70.0
CSS0044490 Camellia sinensis var. sinensis HOM05D006088 ORTHO05D007281 4.7e-13 77.8 60 70.0
Gohir.A09G186501 Gossypium hirsutum HOM05D006088 ORTHO05D007281 4.7e-13 77.8 60 70.0
Gohir.D09G180600 Gossypium hirsutum HOM05D006088 ORTHO05D007281 4.7e-13 77.8 60 70.0
Gorai.006G202600 Gossypium raimondii HOM05D006088 ORTHO05D007281 4.7e-13 77.8 60 70.0
Hma1.2p1_0707F.1_g207070 Hydrangea macrophylla HOM05D006088 ORTHO05D007281 4.7e-13 77.8 60 70.0
Nn1g00333 Nelumbo nucifera HOM05D006088 ORTHO05D007281 4.7e-13 77.8 125 44.0
TAR629G2736 Trochodendron aralioides HOM05D006088 ORTHO05D007281 4.7e-13 77.8 60 68.3
COL.COLO4_16809 Corchorus olitorius HOM05D006088 ORTHO05D007281 6.2e-13 77.4 60 68.3
MELO3C019378.2 Cucumis melo HOM05D006088 ORTHO05D007281 6.2e-13 77.4 124 45.2
SalBow4G2097 Salvia bowleyana HOM05D006088 ORTHO05D007281 6.2e-13 77.4 60 70.0
SGA_v2.0_scaffold44G16827 Striga asiatica HOM05D006088 ORTHO05D007281 6.2e-13 77.4 60 68.3
AUR62035569 Chenopodium quinoa HOM05D006088 ORTHO05D007281 1.4e-12 76.3 60 70.0
CsaV3_3G019690 Cucumis sativus L. HOM05D006088 ORTHO05D007281 1.4e-12 76.3 124 45.2
Eucgr.A01442 Eucalyptus grandis HOM05D006088 ORTHO05D007281 1.4e-12 76.3 124 43.5
Peaxi162Scf00740g00327 Petunia axillaris HOM05D006088 ORTHO05D007281 1.4e-12 76.3 60 68.3
EL10Ac3g05241 Beta vulgaris HOM05D006088 ORTHO05D007281 1.8e-12 75.9 60 68.3
AUR62006059 Chenopodium quinoa HOM05D006088 ORTHO05D007281 1.8e-12 75.9 60 70.0
Glyma.13G078800 Glycine max HOM05D006088 ORTHO05D007281 1.8e-12 75.9 125 40.8
Rhsim03G0211500 Rhododendron simsii HOM05D006088 ORTHO05D007281 1.8e-12 75.9 60 70.0
Ca_12770_v3 Cicer arietinum L. HOM05D006088 ORTHO05D007281 2.4e-12 75.5 60 68.3
Cc02_g01220 Coffea canephora HOM05D006088 ORTHO05D007281 2.4e-12 75.5 60 70.0
vmacro06404 Vaccinium macrocarpon HOM05D006088 ORTHO05D007281 2.4e-12 75.5 60 70.0
ATR0757G203 Amborella trichopoda HOM05D006088 ORTHO05D007281 3.1e-12 75.1 54 70.4
MBI12_g21748_MAGBIO Magnolia biondii HOM05D006088 ORTHO05D007281 3.1e-12 75.1 60 65.0
Nitab4.5_0002780g0060 Nicotiana tabacum HOM05D006088 ORTHO05D007281 3.1e-12 75.1 123 43.1
Lj5g0026434 Lotus japonicus HOM05D006088 ORTHO05D007281 4.0e-12 74.7 124 43.5
PGR042G2967 Punica granatum HOM05D006088 ORTHO05D007281 4.0e-12 74.7 60 66.7
Lalb_Chr04g0253281 Lupinus albus HOM05D006088 ORTHO05D007281 5.3e-12 74.3 60 68.3
RcHm_v2.0_Chr1g0381781 Rosa chinensis HOM05D006088 ORTHO05D007281 5.3e-12 74.3 60 70.0
PSO063G3091 Papaver somniferum HOM05D006088 ORTHO05D007281 6.9e-12 73.9 60 66.7
MSTRG.27009 Avicennia marina HOM05D006088 ORTHO05D007281 9.0e-12 73.6 60 66.7
Zm00001eb096690 Zea mays HOM05D006088 ORTHO05D007281 9.0e-12 73.6 60 65.0
Phvul.001G074500 Phaseolus vulgaris HOM05D006088 ORTHO05D007281 1.2e-11 73.2 125 40.0
Glyma.14G150400 Glycine max HOM05D006088 ORTHO05D007281 1.5e-11 72.8 125 40.8
Os07g0452400 Oryza sativa ssp. japonica HOM05D006088 ORTHO05D007281 2.6e-11 72.0 60 65.0
DCAR_014551 Daucus carota HOM05D006088 ORTHO05D007281 3.4e-11 71.6 60 66.7
Migut.F00188 Erythranthe guttata HOM05D006088 ORTHO05D007281 3.4e-11 71.6 60 61.7
unitig_52.g17713 Utricularia gibba HOM05D006088 ORTHO05D007281 3.4e-11 71.6 60 65.0
HPP92_025612 Vanilla planifolia HOM05D006088 ORTHO05D007281 3.4e-11 71.6 54 66.7
AL6G35860 Arabidopsis lyrata HOM05D006088 ORTHO05D007281 4.4e-11 71.2 105 45.7
FAN01G2391 Fragaria x ananassa HOM05D006088 ORTHO05D007281 4.4e-11 71.2 60 68.3
FAN03G2371 Fragaria x ananassa HOM05D006088 ORTHO05D007281 4.4e-11 71.2 60 68.3
FAN03G2860 Fragaria x ananassa HOM05D006088 ORTHO05D007281 4.4e-11 71.2 60 68.3
FAN10G3213 Fragaria x ananassa HOM05D006088 ORTHO05D007281 4.4e-11 71.2 60 68.3
FAN10G3559 Fragaria x ananassa HOM05D006088 ORTHO05D007281 4.4e-11 71.2 60 68.3
Prupe.2G314700 Prunus persica HOM05D006088 ORTHO05D007281 5.8e-11 70.9 60 66.7
FvH4_7g32160 Fragaria vesca HOM05D006088 ORTHO05D007281 9.9e-11 70.1 60 66.7
FAN06G1538 Fragaria x ananassa HOM05D006088 ORTHO05D007281 9.9e-11 70.1 60 66.7
Hund21022 Selenicereus undatus HOM05D006088 ORTHO05D007281 1.3e-10 69.7 60 68.3
MD07G1295100 Malus domestica HOM05D006088 ORTHO05D007281 2.2e-10 68.9 60 65.0
TPR.G24535 Trifolium pratense HOM05D006088 ORTHO05D007281 2.2e-10 68.9 60 68.3
DCAR_010586 Daucus carota HOM05D006088 ORTHO05D007281 2.9e-10 68.6 54 66.7
vmacro06403 Vaccinium macrocarpon HOM05D006088 ORTHO05D007281 6.4e-10 67.4 60 65.0
Aqoxy5G04265 Aquilegia oxysepala HOM05D006088 ORTHO05D007281 8.4e-10 67.0 127 37.8
arahy.Tifrunner.gnm1.ann1.IYG6N7 Arachis hypogaea HOM05D006088 ORTHO05D007281 8.4e-10 67.0 121 38.8
Psat6g035960 Pisum sativum HOM05D006088 ORTHO05D007281 8.4e-10 67.0 125 40.8
Haze_00251 Corylus avellana HOM05D006088 ORTHO05D007281 1.4e-09 66.2 104 42.3
A02p40390 Brassica napus HOM05D006088 ORTHO05D007281 1.9e-09 65.9 96 47.9
arahy.Tifrunner.gnm1.ann1.F1TPPK Arachis hypogaea HOM05D006088 ORTHO05D007281 2.4e-09 65.5 61 60.7
Haze_00245 Corylus avellana HOM05D006088 ORTHO05D007281 3.2e-09 65.1 104 43.3
arahy.Tifrunner.gnm1.ann1.W8KES2 Arachis hypogaea HOM05D006088 ORTHO05D007281 5.4e-09 64.3 120 35.8
Nitab4.5_0005326g0020 Nicotiana tabacum HOM05D006088 ORTHO05D007281 9.3e-09 63.5 91 42.9
Lsat_1_v5_gn_2_135240 Lactuca sativa HOM05D006088 ORTHO05D007281 2.1e-08 62.4 97 44.3
SMO266G0077 Selaginella moellendorffii HOM05D006088 ORTHO05D007281 1.7e-07 59.3 54 55.6
CDE11G0933 Ceratophyllum demersum HOM05D006088 ORTHO05D007281 3.9e-07 58.2 60 53.3
CDE02G1851 Ceratophyllum demersum HOM05D006088 ORTHO05D007281 8.7e-07 57.0 72 41.7


User provided reference genes

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