Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 1.8e-304 1048.5 556 100.0
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 1.8e-288 995.3 548 96.0
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 1.7e-286 988.8 548 95.6
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 1.7e-278 962.2 556 92.6
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 5.0e-278 960.7 553 92.6
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 2.1e-276 955.3 550 85.5
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 1.7e-262 909.1 553 84.8
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 9.7e-250 866.7 558 80.6
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 5.3e-248 860.9 547 86.3
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 5.3e-248 860.9 556 78.2
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 2.2e-246 855.5 560 77.9
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 1.8e-240 835.9 554 80.5
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 2.9e-238 828.6 564 77.0
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 1.5e-226 789.6 559 76.0
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 1.1e-221 773.5 562 73.0
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 8.9e-219 763.8 568 69.9
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 1.2e-218 763.5 564 72.7
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 1.2e-218 763.5 568 69.7
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 1.2e-218 763.5 556 72.8
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 1.5e-218 763.1 565 70.1
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 6.4e-217 757.7 570 70.0
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 1.1e-211 740.3 563 68.9
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 9.8e-210 733.8 560 71.1
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 2.7e-207 725.7 572 65.4
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 1.1e-197 693.7 552 66.7
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 2.4e-195 686.0 554 66.4
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 5.3e-171 605.1 577 59.8
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 2.5e-165 586.3 584 52.6
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 1.3e-164 583.9 340 84.7
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 3.3e-157 559.3 575 51.5
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 5.0e-153 545.4 647 45.9
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 1.8e-150 537.0 584 49.7
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 1.8e-150 537.0 560 50.2
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 5.7e-149 531.9 571 53.1
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 4.1e-147 525.8 574 49.3
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 5.3e-147 525.4 557 50.8
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 6.9e-147 525.0 560 49.8
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 1.5e-146 523.9 576 49.5
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 2.0e-146 523.5 587 47.7
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 2.0e-146 523.5 598 49.7
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 3.4e-146 522.7 588 48.1
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 1.3e-145 520.8 554 49.8
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 2.9e-145 519.6 579 49.9
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 2.5e-144 516.5 572 47.0
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 7.2e-144 515.0 590 49.3
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 6.1e-143 511.9 593 50.3
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 6.1e-143 511.9 581 46.6
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 1.8e-142 510.4 579 46.1
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 6.7e-142 508.4 590 45.9
BolC2t12088H Brassica oleracea HOM05D003812 ORTHO05D004393 1.5e-141 507.3 295 85.8
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 7.4e-141 505.0 549 49.4
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 7.4e-141 505.0 552 50.2
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 3.7e-140 502.7 602 49.3
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 6.3e-140 501.9 566 46.6
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 1.3e-137 494.2 575 47.3
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.7e-137 493.8 581 45.6
BcaB01g00718 Brassica carinata HOM05D003812 ORTHO05D004393 1.1e-136 491.1 287 86.4
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 7.2e-136 488.4 587 45.1
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 2.7e-135 486.5 569 45.3
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 8.0e-135 485.0 482 52.7
TPR.G11261 Trifolium pratense HOM05D003812 ORTHO05D004393 1.8e-134 483.8 577 46.1
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 4.0e-134 482.6 565 47.3
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 2.6e-133 479.9 580 47.4
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 3.3e-133 479.6 627 47.7
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 7.5e-133 478.4 621 44.1
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 3.7e-132 476.1 608 46.5
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 5.3e-131 472.2 564 45.2
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 1.6e-130 470.7 463 52.1
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 2.0e-130 470.3 485 51.3
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.0e-129 468.0 575 45.6
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 1.3e-129 467.6 632 47.5
TPR.G23263 Trifolium pratense HOM05D003812 ORTHO05D004393 2.2e-129 466.8 581 44.4
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 2.9e-129 466.5 455 52.3
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 5.0e-129 465.7 594 46.0
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 9.4e-128 461.5 592 46.6
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 1.6e-127 460.7 594 43.6
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 6.1e-127 458.8 576 44.4
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 2.3e-126 456.8 567 44.3
Nitab4.5_0010162g0010 Nicotiana tabacum HOM05D003812 ORTHO05D004393 4.4e-125 452.6 483 49.1
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 5.7e-125 452.2 563 44.8
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 7.5e-125 451.8 585 45.5
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 8.3e-124 448.4 500 47.0
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 1.8e-123 447.2 455 49.5
arahy.Tifrunner.gnm1.ann1.B1HR4A Arachis hypogaea HOM05D003812 ORTHO05D004393 5.4e-123 445.7 605 44.5
arahy.Tifrunner.gnm1.ann1.CNXN93 Arachis hypogaea HOM05D003812 ORTHO05D004393 5.4e-123 445.7 605 44.5
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 9.1e-123 444.9 465 49.7
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 1.2e-122 444.5 632 43.8
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 1.2e-122 444.5 565 43.4
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 2.7e-122 443.4 656 42.8
HanXRQChr05g0135721 Helianthus annuus HOM05D003812 ORTHO05D004393 3.5e-122 443.0 551 45.2
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 1.2e-119 434.5 495 48.1
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 9.8e-117 424.9 653 41.0
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 8.3e-116 421.8 626 45.2
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 1.1e-115 421.4 624 45.4
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 4.5e-114 416.0 663 37.3
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 1.4e-110 404.4 433 48.7
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 1.2e-106 391.3 562 44.3
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 1.3e-105 387.9 611 39.6
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 7.3e-104 382.1 557 39.7
Nitab4.5_0003520g0020 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.6e-103 380.9 476 44.7
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 2.8e-103 380.2 427 47.8
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 1.5e-101 374.4 496 43.8
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 3.2e-99 366.7 560 38.6
HPP92_018576 Vanilla planifolia HOM05D003812 ORTHO05D004393 1.9e-96 357.5 580 41.7
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 8.1e-95 352.1 462 44.4
Carub.0005s1566 Capsella rubella HOM05D003812 ORTHO05D004393 8.9e-94 348.6 239 72.0
Carub.0005s1565 Capsella rubella HOM05D003812 ORTHO05D004393 1.3e-92 344.7 277 67.5
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 1.1e-86 325.1 451 38.8
Pp3c16_3240 Physcomitrium patens HOM05D003812 ORTHO05D004393 1.1e-86 325.1 440 38.6
SMO367G0920 Selaginella moellendorffii HOM05D003812 ORTHO05D004393 2.4e-86 323.9 429 41.5
vmacro06691 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 7.6e-85 318.9 505 38.0
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 3.2e-83 313.5 473 43.8
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 9.2e-83 312.0 665 36.2
Cc00_g24630 Coffea canephora HOM05D003812 ORTHO05D004393 3.5e-82 310.1 352 49.7
RcHm_v2.0_Chr2g0084521 Rosa chinensis HOM05D003812 ORTHO05D004393 3.0e-81 307.0 325 48.9
AUR62002481 Chenopodium quinoa HOM05D003812 ORTHO05D004393 3.9e-81 306.6 332 49.1
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 3.1e-78 297.0 485 35.3
FAN23G1808 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.3e-76 291.6 339 45.7
Nitab4.5_0000160g0140 Nicotiana tabacum HOM05D003812 ORTHO05D004393 3.8e-76 290.0 361 45.4
Ah.13g073180 Amaranthus hybridus HOM05D003812 ORTHO05D004393 8.1e-71 272.3 258 51.2
Lalb_Chr05g0212031 Lupinus albus HOM05D003812 ORTHO05D004393 4.8e-63 246.5 309 42.7
Lalb_Chr05g0212041 Lupinus albus HOM05D003812 ORTHO05D004393 4.8e-63 246.5 235 53.2
Hma1.2p1_0381F.1_g140050 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 2.6e-61 240.7 239 53.1
RcHm_v2.0_Chr2g0084531 Rosa chinensis HOM05D003812 ORTHO05D004393 3.7e-55 220.3 274 46.4
Sc13g0007550 Simmondsia chinensis HOM05D003812 ORTHO05D004393 4.0e-54 216.9 244 48.4
Haze_11132 Corylus avellana HOM05D003812 ORTHO05D004393 5.3e-54 216.5 333 39.3
TAR636G0947 Trochodendron aralioides HOM05D003812 ORTHO05D004393 1.1e-51 208.8 273 47.6
Hma1.2p1_0381F.1_g140060 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 1.6e-50 204.9 158 59.5
Cc06_g19240 Coffea canephora HOM05D003812 ORTHO05D004393 2.5e-48 197.6 132 64.4
Hund12300 Selenicereus undatus HOM05D003812 ORTHO05D004393 3.1e-46 190.7 235 45.5
Cc06_g19250 Coffea canephora HOM05D003812 ORTHO05D004393 1.2e-45 188.7 234 45.7
Nitab4.5_0001168g0120 Nicotiana tabacum HOM05D003812 ORTHO05D004393 7.6e-45 186.0 308 35.7
ATR0580G406 Amborella trichopoda HOM05D003812 ORTHO05D004393 1.3e-39 168.7 239 41.4
Ah.13g073190 Amaranthus hybridus HOM05D003812 ORTHO05D004393 1.5e-37 161.8 147 54.4
TAR636G0254 Trochodendron aralioides HOM05D003812 ORTHO05D004393 1.0e-36 159.1 264 43.9
Oeu022463.3 Olea europaea HOM05D003812 ORTHO05D004393 8.5e-36 156.0 372 33.9
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 1.1e-30 139.0 190 41.6
CBR_g26464 Chara braunii HOM05D003812 ORTHO05D004393 1.4e-30 138.7 385 26.2
HanXRQChr17g0553321 Helianthus annuus HOM05D003812 ORTHO05D004393 7.7e-29 132.9 230 38.7
Sc13g0007560 Simmondsia chinensis HOM05D003812 ORTHO05D004393 1.7e-28 131.7 108 57.4
BcaB07g31053 Brassica carinata HOM05D003812 ORTHO05D004393 2.2e-28 131.3 66 97.0
CSS0023461 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.8e-28 130.6 183 40.4
CSS0030669 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.8e-28 130.6 165 41.8
Oeu064436.1 Olea europaea HOM05D003812 ORTHO05D004393 2.5e-27 127.9 183 41.0
CSS0048962 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 4.2e-27 127.1 183 39.9
CSS0001518 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.6e-26 124.0 183 38.3
CSS0002491 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 6.1e-26 123.2 183 40.4
CSS0006626 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 6.1e-26 123.2 183 40.4
CSS0008525 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 6.1e-26 123.2 183 40.4
SHI01261 Sapria himalayana HOM05D003812 ORTHO05D004393 1.1e-24 119.0 127 48.0
VMungo1268G0001 Vigna mungo HOM05D003812 ORTHO05D004393 2.0e-24 118.2 176 38.1
ATR0580G030 Amborella trichopoda HOM05D003812 ORTHO05D004393 1.1e-22 112.5 247 34.0
arahy.Tifrunner.gnm1.ann1.NBB910 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.1e-22 112.5 103 52.4
Haze_11133 Corylus avellana HOM05D003812 ORTHO05D004393 1.1e-22 112.5 107 53.3
arahy.Tifrunner.gnm1.ann1.C22IND Arachis hypogaea HOM05D003812 ORTHO05D004393 4.1e-22 110.5 96 54.2
arahy.Tifrunner.gnm1.ann1.WBRQ5K Arachis hypogaea HOM05D003812 ORTHO05D004393 7.0e-22 109.8 102 52.0
Hund12301 Selenicereus undatus HOM05D003812 ORTHO05D004393 2.2e-20 104.8 239 41.8
Os01g0528000 Oryza sativa ssp. japonica HOM05D003812 ORTHO05D004393 2.5e-19 101.3 124 42.7
arahy.Tifrunner.gnm1.ann1.05VQ85 Arachis hypogaea HOM05D003812 ORTHO05D004393 9.4e-19 99.4 81 55.6
SEGI_23375 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 1.8e-17 95.1 186 35.5
CSS0036967 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.2e-15 88.2 78 52.6
SEGI_01468 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 1.8e-14 85.1 69 52.2
arahy.Tifrunner.gnm1.ann1.8MB3N8 Arachis hypogaea HOM05D003812 ORTHO05D004393 4.5e-13 80.5 82 47.6
Nn1g08161 Nelumbo nucifera HOM05D003812 ORTHO05D004393 3.8e-12 77.4 184 44.0
arahy.Tifrunner.gnm1.ann1.SF8VIF Arachis hypogaea HOM05D003812 ORTHO05D004393 6.5e-12 76.6 78 48.7
BolC8t48198H Brassica oleracea HOM05D003812 ORTHO05D004393 7.2e-11 73.2 35 94.3
vmacro06690 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 1.2e-10 72.4 43 74.4
FAN20G1426 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.8e-09 68.6 94 47.9
FvH4_2g23680 Fragaria vesca HOM05D003812 ORTHO05D004393 7.5e-08 63.2 103 43.7
SEGI_03594 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 2.2e-07 61.6 44 65.9
MBI16_g46635_MAGBIO Magnolia biondii HOM05D000963 ORTHO05D005131 1.8e-06 58.5 280 30.7
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 2.4e-06 58.2 457 23.6
Sc25g0002350 Simmondsia chinensis HOM05D003812 ORTHO05D004393 4.1e-06 57.4 47 57.4
Cc00_g35850 Coffea canephora HOM05D003812 ORTHO05D004393 9.1e-06 56.2 75 41.3


User provided reference genes

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