Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p40270 Brassica napus HOM05D012238 ORTHO05D016114 2.6e-43 178.3 90 100.0
BraA02t08996Z Brassica rapa HOM05D012238 ORTHO05D016114 2.6e-43 178.3 90 100.0
BolC1t02792H Brassica oleracea HOM05D012238 ORTHO05D016114 1.2e-40 169.5 90 95.6
C09p42890 Brassica napus HOM05D012238 ORTHO05D016114 2.7e-32 141.7 96 81.2
BolC9t57159H Brassica oleracea HOM05D012238 ORTHO05D016114 2.7e-32 141.7 96 81.2
C02p31510 Brassica napus HOM05D012238 ORTHO05D016114 2.3e-28 128.6 64 98.4
C04p29370 Brassica napus HOM05D012238 ORTHO05D016114 1.2e-27 126.3 64 95.3
C01p28650 Brassica napus HOM05D012238 ORTHO05D016114 3.4e-27 124.8 64 95.3
A03p35510 Brassica napus HOM05D012238 ORTHO05D016114 1.7e-26 122.5 68 95.6
BolC2t09437H Brassica oleracea HOM05D012238 ORTHO05D016114 7.6e-19 97.1 48 97.9
BcaC04g20500 Brassica carinata HOM05D012238 ORTHO05D016114 2.4e-17 92.0 43 100.0
AL7G15820 Arabidopsis lyrata HOM05D001098 ORTHO05D002527 8.4e-10 67.0 74 52.7
BcaB03g12410 Brassica carinata HOM05D001098 ORTHO05D002527 8.4e-10 67.0 74 52.7
BcaNung02390 Brassica carinata HOM05D001098 ORTHO05D002527 8.4e-10 67.0 74 52.7
BcaNung06457 Brassica carinata HOM05D001098 ORTHO05D002527 8.4e-10 67.0 74 52.7
A01p03220 Brassica napus HOM05D001098 ORTHO05D002527 8.4e-10 67.0 74 52.7
A03p63540 Brassica napus HOM05D001098 ORTHO05D002527 8.4e-10 67.0 74 52.7
A08p21890 Brassica napus HOM05D001098 ORTHO05D002527 8.4e-10 67.0 74 52.7
C01p03570 Brassica napus HOM05D001098 ORTHO05D002527 8.4e-10 67.0 74 52.7
C07p61120 Brassica napus HOM05D001098 ORTHO05D002527 8.4e-10 67.0 74 52.7
BolC1t00347H Brassica oleracea HOM05D001098 ORTHO05D002527 8.4e-10 67.0 74 52.7
BolC7t46536H Brassica oleracea HOM05D001098 ORTHO05D002527 8.4e-10 67.0 74 52.7
BraA01t00307Z Brassica rapa HOM05D001098 ORTHO05D002527 8.4e-10 67.0 74 52.7
BraA03t15424Z Brassica rapa HOM05D001098 ORTHO05D002527 8.4e-10 67.0 74 52.7
BraA08t34142Z Brassica rapa HOM05D001098 ORTHO05D002527 8.4e-10 67.0 74 52.7
Carub.0007s0496 Capsella rubella HOM05D001098 ORTHO05D002527 1.1e-09 66.6 74 51.4
Thhalv10025582m.g Eutrema salsugineum HOM05D001098 ORTHO05D002527 1.1e-09 66.6 74 51.4
Lsat_1_v5_gn_8_120701 Lactuca sativa HOM05D001098 ORTHO05D002527 1.4e-09 66.2 73 52.1
Aa31sc18G70 Aethionema arabicum HOM05D001098 ORTHO05D002527 2.4e-09 65.5 74 50.0
CARHR243660 Cardamine hirsuta HOM05D001098 ORTHO05D002527 2.4e-09 65.5 74 50.0
Gohir.A04G111700 Gossypium hirsutum HOM05D001098 ORTHO05D002527 2.4e-09 65.5 73 49.3
Sp7g33130 Schrenkiella parvula HOM05D001098 ORTHO05D002527 2.4e-09 65.5 74 50.0
Atru.chr5.3569 Acer truncatum HOM05D001098 ORTHO05D002527 3.2e-09 65.1 73 52.1
BcaC01g00493 Brassica carinata HOM05D001098 ORTHO05D002527 3.2e-09 65.1 73 52.1
C03p80640 Brassica napus HOM05D001098 ORTHO05D002527 3.2e-09 65.1 73 52.1
BolC3t20307H Brassica oleracea HOM05D001098 ORTHO05D002527 3.2e-09 65.1 73 52.1
Hma1.2p1_0271F.1_g108730 Hydrangea macrophylla HOM05D001098 ORTHO05D002527 3.2e-09 65.1 79 46.8
Prupe.8G181000 Prunus persica HOM05D001098 ORTHO05D002527 3.2e-09 65.1 73 52.1
Cc09_g10880 Coffea canephora HOM05D001098 ORTHO05D002527 4.2e-09 64.7 74 47.3
CsaV3_6G010050 Cucumis sativus L. HOM05D001098 ORTHO05D002527 4.2e-09 64.7 74 47.3
Dinv41864 Davidia involucrata HOM05D001098 ORTHO05D002527 4.2e-09 64.7 73 50.7
Actinidia17990 Actinidia chinensis HOM05D001098 ORTHO05D002527 7.1e-09 63.9 73 50.7
Ciclev10028748m.g Citrus clementina HOM05D001098 ORTHO05D002527 7.1e-09 63.9 73 50.7
MD05G1141000 Malus domestica HOM05D001098 ORTHO05D002527 7.1e-09 63.9 73 49.3
ClCG02G010830 Citrullus lanatus HOM05D001098 ORTHO05D002527 9.3e-09 63.5 74 45.9
COL.COLO4_34319 Corchorus olitorius HOM05D001098 ORTHO05D002527 9.3e-09 63.5 73 49.3
MELO3C013485.2 Cucumis melo HOM05D001098 ORTHO05D002527 9.3e-09 63.5 74 45.9
DCAR_006385 Daucus carota HOM05D001098 ORTHO05D002527 9.3e-09 63.5 73 49.3
Duzib132G1111 Durio zibethinus HOM05D001098 ORTHO05D002527 9.3e-09 63.5 73 49.3
Duzib248G0955 Durio zibethinus HOM05D001098 ORTHO05D002527 9.3e-09 63.5 73 49.3
Gohir.A13G064400 Gossypium hirsutum HOM05D001098 ORTHO05D002527 9.3e-09 63.5 73 49.3
HanXRQChr16g0515181 Helianthus annuus HOM05D001098 ORTHO05D002527 9.3e-09 63.5 73 47.9
Sed0023457 Sechium edule HOM05D001098 ORTHO05D002527 9.3e-09 63.5 74 45.9
Thecc.02G147100 Theobroma cacao HOM05D001098 ORTHO05D002527 9.3e-09 63.5 73 49.3
TPR.G18630 Trifolium pratense HOM05D001098 ORTHO05D002527 9.3e-09 63.5 73 47.9
GSVIVG01023864001 Vitis vinifera HOM05D001098 ORTHO05D002527 9.3e-09 63.5 73 50.7
Migut.B00005 Erythranthe guttata HOM05D001098 ORTHO05D002527 1.2e-08 63.2 73 47.9
Eucgr.I01538 Eucalyptus grandis HOM05D001098 ORTHO05D002527 1.2e-08 63.2 74 47.3
Gorai.012G138800 Gossypium raimondii HOM05D001098 ORTHO05D002527 1.2e-08 63.2 73 47.9
Oeu012219.1 Olea europaea HOM05D001098 ORTHO05D002527 1.2e-08 63.2 73 47.9
Oeu050440.1 Olea europaea HOM05D001098 ORTHO05D002527 1.2e-08 63.2 73 47.9
Sed0023927 Sechium edule HOM05D001098 ORTHO05D002527 1.2e-08 63.2 74 44.6
Actinidia20579 Actinidia chinensis HOM05D001098 ORTHO05D002527 1.6e-08 62.8 73 49.3
ATR0057G016 Amborella trichopoda HOM05D001098 ORTHO05D002527 1.6e-08 62.8 73 50.7
Lj9A408T81 Lonicera japonica HOM05D001098 ORTHO05D002527 1.6e-08 62.8 73 49.3
MBI01_g17242_MAGBIO Magnolia biondii HOM05D001098 ORTHO05D002527 1.6e-08 62.8 73 49.3
MBI01_g32424_MAGBIO Magnolia biondii HOM05D001098 ORTHO05D002527 1.6e-08 62.8 73 49.3
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 1.6e-08 62.8 73 49.3
Manes.18G113200 Manihot esculenta HOM05D001098 ORTHO05D002527 2.1e-08 62.4 73 49.3
SalBow1G7648 Salvia bowleyana HOM05D001098 ORTHO05D002527 2.1e-08 62.4 73 47.9
SalBow7G2674 Salvia bowleyana HOM05D001098 ORTHO05D002527 2.1e-08 62.4 73 47.9
arahy.Tifrunner.gnm1.ann1.N1X7B2 Arachis hypogaea HOM05D001098 ORTHO05D002527 2.7e-08 62.0 75 44.0
MSTRG.16957 Avicennia marina HOM05D001098 ORTHO05D002527 2.7e-08 62.0 73 46.6
CSS0007326 Camellia sinensis var. sinensis HOM05D001098 ORTHO05D002527 2.7e-08 62.0 73 47.9
CSS0035199 Camellia sinensis var. sinensis HOM05D001098 ORTHO05D002527 2.7e-08 62.0 73 47.9
Ca_06505_v3 Cicer arietinum L. HOM05D001098 ORTHO05D002527 2.7e-08 62.0 73 47.9
Glyma.02G312000 Glycine max HOM05D001098 ORTHO05D002527 2.7e-08 62.0 73 47.9
Hma1.2p1_0032F.1_g018710 Hydrangea macrophylla HOM05D001098 ORTHO05D002527 2.7e-08 62.0 73 47.9
LjContig00081g0022408 Lotus japonicus HOM05D001098 ORTHO05D002527 2.7e-08 62.0 73 47.9
MD11G1242300 Malus domestica HOM05D001098 ORTHO05D002527 2.7e-08 62.0 73 46.6
PSO541G0403 Papaver somniferum HOM05D001098 ORTHO05D002527 2.7e-08 62.0 73 46.6
RcHm_v2.0_Chr6g0281071 Rosa chinensis HOM05D001098 ORTHO05D002527 2.7e-08 62.0 73 49.3
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 2.7e-08 62.0 89 43.8
CiPaw.06G114700 Carya illinoinensis HOM05D001098 ORTHO05D002527 3.5e-08 61.6 73 46.6
CDE10G0149 Ceratophyllum demersum HOM05D001098 ORTHO05D002527 3.5e-08 61.6 74 45.9
ECA233G3688 Erigeron canadensis HOM05D001098 ORTHO05D002527 3.5e-08 61.6 73 47.9
FvH4_2g16930 Fragaria vesca HOM05D001098 ORTHO05D002527 3.5e-08 61.6 73 49.3
FAN15G1608 Fragaria x ananassa HOM05D001098 ORTHO05D002527 3.5e-08 61.6 73 49.3
FAN24G1038 Fragaria x ananassa HOM05D001098 ORTHO05D002527 3.5e-08 61.6 73 49.3
FAN27G2361 Fragaria x ananassa HOM05D001098 ORTHO05D002527 3.5e-08 61.6 73 49.3
PSO675G9097 Papaver somniferum HOM05D001098 ORTHO05D002527 3.5e-08 61.6 73 46.6
Rhsim05G0044700 Rhododendron simsii HOM05D001098 ORTHO05D002527 3.5e-08 61.6 73 46.6
TAR628G0214 Trochodendron aralioides HOM05D000069 ORTHO05D000060 3.5e-08 61.6 73 46.6
HPP92_015755 Vanilla planifolia HOM05D001098 ORTHO05D002527 3.5e-08 61.6 76 44.7
arahy.Tifrunner.gnm1.ann1.1X8DY6 Arachis hypogaea HOM05D001098 ORTHO05D002527 4.6e-08 61.2 73 45.2
arahy.Tifrunner.gnm1.ann1.5U49GI Arachis hypogaea HOM05D001098 ORTHO05D002527 4.6e-08 61.2 73 45.2
arahy.Tifrunner.gnm1.ann1.7NF1VE Arachis hypogaea HOM05D001098 ORTHO05D002527 4.6e-08 61.2 73 45.2
CiPaw.05G093900 Carya illinoinensis HOM05D001098 ORTHO05D002527 4.6e-08 61.2 73 46.6
Psat2g000520 Pisum sativum HOM05D001098 ORTHO05D002527 4.6e-08 61.2 73 45.2
TWI75G1677 Tripterygium wilfordii HOM05D001098 ORTHO05D002527 4.6e-08 61.2 73 47.9
TWI79G1444 Tripterygium wilfordii HOM05D001098 ORTHO05D002527 4.6e-08 61.2 73 47.9
unitig_90.g27539 Utricularia gibba HOM05D001098 ORTHO05D002527 4.6e-08 61.2 73 46.6
Zm00001eb137090 Zea mays HOM05D001098 ORTHO05D002648 4.6e-08 61.2 73 47.9
Zm00001eb325140 Zea mays HOM05D001098 ORTHO05D002527 4.6e-08 61.2 73 47.9
Aqoxy3G04159 Aquilegia oxysepala HOM05D001098 ORTHO05D002527 6.0e-08 60.8 73 46.6
Glyma.14G000600 Glycine max HOM05D001098 ORTHO05D002527 6.0e-08 60.8 73 46.6
Nn6g31647 Nelumbo nucifera HOM05D001098 ORTHO05D002527 6.0e-08 60.8 53 56.6
Os07g0573700 Oryza sativa ssp. japonica HOM05D001098 ORTHO05D002527 6.0e-08 60.8 73 46.6
TAR381G1518 Trochodendron aralioides HOM05D001098 ORTHO05D002527 6.0e-08 60.8 73 46.6
VMungo0647G1862 Vigna mungo HOM05D001098 ORTHO05D002527 6.0e-08 60.8 73 45.2
Ah.01g017660 Amaranthus hybridus HOM05D001098 ORTHO05D002527 7.8e-08 60.5 74 48.6
CAN.G321.15 Capsicum annuum HOM05D001098 ORTHO05D002527 7.8e-08 60.5 76 46.1
Medtr5g099280 Medicago truncatula HOM05D001098 ORTHO05D002527 7.8e-08 60.5 73 46.6
Nitab4.5_0001003g0090 Nicotiana tabacum HOM05D001098 ORTHO05D002527 7.8e-08 60.5 76 46.1
Nitab4.5_0009631g0030 Nicotiana tabacum HOM05D001098 ORTHO05D002527 7.8e-08 60.5 76 46.1
PGR142G3259 Punica granatum HOM05D001098 ORTHO05D002527 7.8e-08 60.5 73 46.6
QL06p014336 Quercus lobata HOM05D001098 ORTHO05D002527 7.8e-08 60.5 73 47.9
Solyc11g008590.2 Solanum lycopersicum HOM05D001098 ORTHO05D002527 7.8e-08 60.5 76 46.1
Sopen11g004380 Solanum pennellii HOM05D001098 ORTHO05D002527 7.8e-08 60.5 76 46.1
PGSC0003DMG400016250 Solanum tuberosum HOM05D001098 ORTHO05D002527 7.8e-08 60.5 76 46.1
Phvul.008G292800 Phaseolus vulgaris HOM05D001098 ORTHO05D002527 1.0e-07 60.1 73 45.2
Potri.016G113200 Populus trichocarpa HOM05D001098 ORTHO05D002527 1.0e-07 60.1 73 47.9
Rhsim11G0198300 Rhododendron simsii HOM05D000001 ORTHO05D000003 1.0e-07 60.1 73 47.9
CANSAT25G0204 Cannabis sativa HOM05D001098 ORTHO05D002527 1.3e-07 59.7 73 45.2
Haze_10071 Corylus avellana HOM05D001098 ORTHO05D002527 1.3e-07 59.7 73 45.2
Gohir.D04G152000 Gossypium hirsutum HOM05D001098 ORTHO05D002527 1.3e-07 59.7 73 45.2
Gorai.013G064700 Gossypium raimondii HOM05D001098 ORTHO05D002527 1.3e-07 59.7 72 47.2
Lalb_Chr10g0107701 Lupinus albus HOM05D001098 ORTHO05D002527 1.3e-07 59.7 73 45.2
Manes.02G204100 Manihot esculenta HOM05D001098 ORTHO05D002527 1.3e-07 59.7 73 47.9
AUR62010182 Chenopodium quinoa HOM05D001098 ORTHO05D002527 2.3e-07 58.9 74 48.6
Peaxi162Scf00296g01213 Petunia axillaris HOM05D001098 ORTHO05D002527 2.3e-07 58.9 76 44.7
Hund06357 Selenicereus undatus HOM05D001098 ORTHO05D002527 2.3e-07 58.9 74 48.6
AUR62013184 Chenopodium quinoa HOM05D001098 ORTHO05D002527 3.0e-07 58.5 74 47.3
Sc08g0002100 Simmondsia chinensis HOM05D001098 ORTHO05D002527 3.0e-07 58.5 74 47.3
Zm00001eb412040 Zea mays HOM05D001098 ORTHO05D002527 3.9e-07 58.2 73 43.8
Aqoxy2G01309 Aquilegia oxysepala HOM05D001098 ORTHO05D002527 5.1e-07 57.8 53 58.5
Aqoxy6G01547 Aquilegia oxysepala HOM05D001098 ORTHO05D002527 5.1e-07 57.8 53 58.5
vmacro02343 Vaccinium macrocarpon HOM05D001098 ORTHO05D002527 6.6e-07 57.4 73 43.8
C03p20580 Brassica napus HOM05D001098 ORTHO05D012826 1.1e-06 56.6 45 60.0
BolC3t14466H Brassica oleracea HOM05D001098 ORTHO05D012826 1.1e-06 56.6 45 60.0
BcaB08g35179 Brassica carinata HOM05D060190 ORTHO05D092674 1.5e-06 56.2 49 53.1
QL05p062032 Quercus lobata HOM05D001098 ORTHO05D002527 2.5e-06 55.5 73 42.5
SMO118G0063 Selaginella moellendorffii HOM05D001098 ORTHO05D002527 2.5e-06 55.5 74 40.5
QL05p062370 Quercus lobata HOM05D001098 ORTHO05D002527 3.3e-06 55.1 73 45.2


User provided reference genes

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