Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p37910 Brassica napus HOM05D005099 ORTHO05D006087 1.3e-94 349.7 174 100.0
BraA02t08775Z Brassica rapa HOM05D005099 ORTHO05D006087 1.3e-91 339.7 174 97.1
BcaC03g17704 Brassica carinata HOM05D005099 ORTHO05D006087 4.9e-91 337.8 174 96.0
C02p57110 Brassica napus HOM05D005099 ORTHO05D006087 4.9e-91 337.8 174 96.0
BolC2t11783H Brassica oleracea HOM05D005099 ORTHO05D006087 4.9e-91 337.8 174 96.0
BcaB07g34138 Brassica carinata HOM05D005099 ORTHO05D006087 1.1e-82 310.1 176 90.9
BraA06t26768Z Brassica rapa HOM05D005099 ORTHO05D006087 4.2e-66 255.0 192 74.5
Thhalv10004959m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 3.6e-65 251.9 194 73.2
Sp2g19520 Schrenkiella parvula HOM05D005099 ORTHO05D006087 1.3e-64 250.0 175 76.6
BcaNung02585 Brassica carinata HOM05D005099 ORTHO05D006087 3.3e-63 245.4 212 67.5
BolC7t44497H Brassica oleracea HOM05D005099 ORTHO05D006087 3.3e-63 245.4 212 67.5
BcaC06g30711 Brassica carinata HOM05D005099 ORTHO05D006087 3.7e-62 241.9 217 65.9
A06p38540 Brassica napus HOM05D005099 ORTHO05D006087 6.3e-62 241.1 215 66.0
C07p39730 Brassica napus HOM05D005099 ORTHO05D006087 9.1e-61 237.3 207 65.7
AT5G49170 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 8.2e-54 214.2 178 70.2
CARHR182490 Cardamine hirsuta HOM05D005099 ORTHO05D006087 1.8e-53 213.0 185 66.5
AL8G22700 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 1.2e-52 210.3 192 65.6
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 5.0e-43 178.3 196 58.2
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 6.5e-43 177.9 197 57.9
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 3.2e-42 175.6 194 57.7
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 5.5e-42 174.9 192 59.9
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 1.6e-41 173.3 191 61.3
Carub.0008s0899 Capsella rubella HOM05D005099 ORTHO05D006087 2.1e-41 172.9 194 56.7
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 2.1e-41 172.9 191 57.6
CARHR081450 Cardamine hirsuta HOM05D005099 ORTHO05D006087 2.7e-41 172.6 182 57.1
THA.LOC104818909 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 1.4e-40 170.2 206 53.4
COL.COLO4_13826 Corchorus olitorius HOM05D005099 ORTHO05D006087 2.3e-40 169.5 200 57.0
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 5.2e-40 168.3 197 59.4
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 6.7e-40 167.9 193 57.5
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 6.7e-40 167.9 181 57.5
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 6.7e-40 167.9 183 59.6
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 2.6e-39 166.0 196 59.2
QL06p010333 Quercus lobata HOM05D005099 ORTHO05D006087 3.3e-39 165.6 202 57.9
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 4.4e-39 165.2 200 53.5
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 4.4e-39 165.2 179 60.3
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 7.5e-39 164.5 186 60.2
MELO3C021313.2 Cucumis melo HOM05D005099 ORTHO05D006087 1.7e-38 163.3 180 61.1
Medtr2g435810 Medicago truncatula HOM05D005099 ORTHO05D006087 1.7e-38 163.3 191 54.5
Medtr2g436150 Medicago truncatula HOM05D005099 ORTHO05D006087 1.7e-38 163.3 191 54.5
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 2.2e-38 162.9 177 59.9
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 2.2e-38 162.9 176 58.0
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 2.8e-38 162.5 178 60.7
Phvul.009G250300 Phaseolus vulgaris HOM05D005099 ORTHO05D006087 8.2e-38 161.0 195 56.9
Glyma.09G042500 Glycine max HOM05D005099 ORTHO05D006087 1.8e-37 159.8 195 57.9
AL3G17960 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 3.1e-37 159.1 198 54.0
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 3.1e-37 159.1 202 56.9
Carub.0003s0637 Capsella rubella HOM05D005099 ORTHO05D006087 1.6e-36 156.8 192 54.2
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 1.6e-36 156.8 191 55.0
TWI73G1062 Tripterygium wilfordii HOM05D005099 ORTHO05D006087 2.0e-36 156.4 201 54.2
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 2.7e-36 156.0 194 53.6
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 4.5e-36 155.2 196 55.6
Gohir.A09G237600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 5.9e-36 154.8 197 53.3
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 1.0e-35 154.1 192 54.2
Potri.010G010600 Populus trichocarpa HOM05D005099 ORTHO05D006087 1.3e-35 153.7 194 52.1
Aa31LG5G17420 Aethionema arabicum HOM05D005099 ORTHO05D006087 2.2e-35 152.9 187 52.4
Glyma.15G150400 Glycine max HOM05D005099 ORTHO05D006087 2.2e-35 152.9 196 54.1
AT3G06840 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 3.8e-35 152.1 198 52.5
Gohir.D09G238500 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.9e-34 149.8 189 54.0
arahy.Tifrunner.gnm1.ann1.2UKM1V Arachis hypogaea HOM05D005099 ORTHO05D006087 2.5e-34 149.4 183 56.3
Gorai.006G261200 Gossypium raimondii HOM05D005099 ORTHO05D006087 3.2e-34 149.1 197 52.8
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 3.2e-34 149.1 188 50.5
arahy.Tifrunner.gnm1.ann1.2F59RJ Arachis hypogaea HOM05D005099 ORTHO05D006087 5.5e-34 148.3 183 56.3
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 2.1e-33 146.4 178 55.6
RcHm_v2.0_Chr4g0423321 Rosa chinensis HOM05D005099 ORTHO05D006087 2.7e-33 146.0 197 53.3
Sabra10G0006200 Salix brachista HOM05D005099 ORTHO05D006087 3.6e-33 145.6 194 49.0
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 4.7e-33 145.2 199 52.3
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 4.7e-33 145.2 199 52.3
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 4.7e-33 145.2 199 52.3
Gorai.005G061600 Gossypium raimondii HOM05D005099 ORTHO05D006087 4.7e-33 145.2 184 53.3
MD16G1164800 Malus domestica HOM05D005099 ORTHO05D006087 4.7e-33 145.2 198 53.0
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 4.7e-33 145.2 189 52.9
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 6.1e-33 144.8 178 55.1
Gohir.D02G055600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.4e-32 143.7 184 52.7
CAN.G14.36 Capsicum annuum HOM05D005099 ORTHO05D006087 2.3e-32 142.9 197 48.7
FAN17G2615 Fragaria x ananassa HOM05D005099 ORTHO05D006087 3.0e-32 142.5 179 54.2
Sp3g05800 Schrenkiella parvula HOM05D005099 ORTHO05D006087 3.0e-32 142.5 196 54.1
Prupe.1G124100 Prunus persica HOM05D005099 ORTHO05D006087 4.0e-32 142.1 191 52.9
SGA_v2.0_scaffold67G22601 Striga asiatica HOM05D005099 ORTHO05D006087 4.0e-32 142.1 169 55.6
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 6.8e-32 141.4 180 55.0
Gohir.A02G050700 Gossypium hirsutum HOM05D005099 ORTHO05D006087 6.8e-32 141.4 183 50.8
Oeu006417.1 Olea europaea HOM05D005099 ORTHO05D006087 8.8e-32 141.0 195 51.8
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 1.2e-31 140.6 184 52.7
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 1.2e-31 140.6 180 51.1
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 2.0e-31 139.8 161 58.4
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 2.6e-31 139.4 177 53.7
FAN07G0877 Fragaria x ananassa HOM05D005099 ORTHO05D006087 2.6e-31 139.4 200 51.0
Thhalv10021591m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 5.7e-31 138.3 199 50.3
Lj6g0002623 Lotus japonicus HOM05D005099 ORTHO05D006087 7.5e-31 137.9 191 50.3
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 6.3e-30 134.8 194 47.9
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 3.1e-29 132.5 192 51.6
Lalb_Chr20g0117371 Lupinus albus HOM05D005099 ORTHO05D006087 5.4e-29 131.7 178 48.3
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 7.0e-29 131.3 196 49.5
MSTRG.3894 Avicennia marina HOM05D005099 ORTHO05D006087 9.1e-29 131.0 183 48.1
Nitab4.5_0003767g0020 Nicotiana tabacum HOM05D005099 ORTHO05D006087 1.2e-28 130.6 196 48.5
Migut.G00130 Erythranthe guttata HOM05D005099 ORTHO05D006087 3.5e-28 129.0 167 51.5
Psat1g155760 Pisum sativum HOM05D005099 ORTHO05D006087 5.9e-28 128.3 198 48.5
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 7.7e-28 127.9 194 49.5
BNapus_Darmor_BZH_scaffold_117p00120 Brassica napus HOM05D005099 ORTHO05D006087 6.5e-27 124.8 199 48.2
BraA01t04411Z Brassica rapa HOM05D005099 ORTHO05D006087 6.5e-27 124.8 199 48.2
MD13G1165200 Malus domestica HOM05D005099 ORTHO05D006087 8.6e-27 124.4 191 48.2
Nn4g25764 Nelumbo nucifera HOM05D005099 ORTHO05D006087 4.2e-26 122.1 179 50.8
BcaC09g47923 Brassica carinata HOM05D005099 ORTHO05D006087 7.2e-26 121.3 198 50.0
BolC1t05583H Brassica oleracea HOM05D005099 ORTHO05D006087 7.2e-26 121.3 198 50.0
PGR004G0666 Punica granatum HOM05D005099 ORTHO05D006087 7.2e-26 121.3 177 50.8
BcaC06g30713 Brassica carinata HOM05D005099 ORTHO05D006087 9.5e-26 120.9 78 80.8
Sopen01g028090 Solanum pennellii HOM05D005099 ORTHO05D006087 9.5e-26 120.9 194 44.8
PSO407G0003 Papaver somniferum HOM05D005099 ORTHO05D006087 1.2e-25 120.6 206 41.7
SHI00249 Sapria himalayana HOM05D005099 ORTHO05D006087 1.2e-25 120.6 179 50.3
Ah.13g074810 Amaranthus hybridus HOM05D005099 ORTHO05D006087 3.6e-25 119.0 178 45.5
Aqoxy2G02900 Aquilegia oxysepala HOM05D005099 ORTHO05D006087 3.6e-25 119.0 183 49.2
Sed0015120 Sechium edule HOM05D005099 ORTHO05D006087 3.6e-25 119.0 167 48.5
PGSC0003DMG400011309 Solanum tuberosum HOM05D005099 ORTHO05D006087 3.6e-25 119.0 193 47.2
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 1.0e-24 117.5 180 46.1
HanXRQChr17g0536041 Helianthus annuus HOM05D005099 ORTHO05D006087 1.0e-24 117.5 199 43.2
Cpa.g.sc50.167 Carica papaya HOM05D005099 ORTHO05D006087 1.4e-24 117.1 128 59.4
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 1.4e-24 117.1 192 45.8
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 2.3e-24 116.3 182 47.3
Solyc01g066440.3 Solanum lycopersicum HOM05D005099 ORTHO05D006087 3.0e-24 115.9 194 44.3
Eucgr.H03959 Eucalyptus grandis HOM05D005099 ORTHO05D006087 5.2e-24 115.2 201 45.3
Sc13g0003250 Simmondsia chinensis HOM05D005099 ORTHO05D006087 8.9e-24 114.4 179 46.9
Oeu053996.1 Olea europaea HOM05D005099 ORTHO05D006087 2.6e-23 112.8 194 45.4
Hund24882 Selenicereus undatus HOM05D005099 ORTHO05D006087 7.5e-23 111.3 185 44.3
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 1.7e-22 110.2 182 46.2
DCAR_002480 Daucus carota HOM05D005099 ORTHO05D006087 1.1e-21 107.5 200 40.5
ECA246G4673 Erigeron canadensis HOM05D005099 ORTHO05D006087 2.4e-21 106.3 203 43.3
PSO170G0513 Papaver somniferum HOM05D005099 ORTHO05D006087 3.1e-21 105.9 210 38.6
HanXRQChr06g0173741 Helianthus annuus HOM05D005099 ORTHO05D006087 4.1e-21 105.5 185 42.2
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 1.2e-20 104.0 168 42.3
Lsat_1_v5_gn_3_21720 Lactuca sativa HOM05D005099 ORTHO05D006087 4.5e-20 102.1 197 41.6
DCAR_023299 Daucus carota HOM05D005099 ORTHO05D006087 2.9e-19 99.4 189 38.1
Sc19g0005440 Simmondsia chinensis HOM05D005099 ORTHO05D006087 2.5e-18 96.3 178 39.3
HPP92_011860 Vanilla planifolia HOM05D005099 ORTHO05D006087 8.0e-17 91.3 165 40.6
arahy.Tifrunner.gnm1.ann1.H54SCY Arachis hypogaea HOM05D005099 ORTHO05D006087 4.0e-16 89.0 182 41.8
arahy.Tifrunner.gnm1.ann1.L8YWMY Arachis hypogaea HOM05D005099 ORTHO05D006087 2.0e-15 86.7 182 41.2
Nn7g36563 Nelumbo nucifera HOM05D005099 ORTHO05D006087 4.6e-12 75.5 90 52.2
Lj6P680T81 Lonicera japonica HOM05D005099 ORTHO05D006087 7.8e-12 74.7 68 63.2
MD13G1165100 Malus domestica HOM05D005099 ORTHO05D006087 2.3e-11 73.2 162 40.7
Nitab4.5_0011001g0010 Nicotiana tabacum HOM05D005099 ORTHO05D006087 1.9e-10 70.1 177 33.9
Lalb_Chr15g0086051 Lupinus albus HOM05D005099 ORTHO05D006087 3.3e-10 69.3 92 50.0
GSVIVG01035110001 Vitis vinifera HOM05D005099 ORTHO05D006087 4.3e-10 68.9 80 58.8
Sopen05g032840 Solanum pennellii HOM05D005099 ORTHO05D006087 5.6e-10 68.6 191 32.5
Nitab4.5_0001097g0130 Nicotiana tabacum HOM05D005099 ORTHO05D006087 1.7e-06 57.0 140 35.0
Actinidia24421 Actinidia chinensis HOM05D001728 ORTHO05D004321 3.7e-06 55.8 173 32.4
MBI19_g32875_MAGBIO Magnolia biondii HOM05D008031 ORTHO05D010063 8.3e-06 54.7 180 28.9


User provided reference genes

Program Settings