Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p37310 Brassica napus HOM05D001603 ORTHO05D001393 2.3e-56 221.9 102 100.0
BraA02t08717Z Brassica rapa HOM05D001603 ORTHO05D001393 1.3e-54 216.1 100 100.0
BcaC03g17638 Brassica carinata HOM05D001603 ORTHO05D001393 1.7e-51 205.7 100 96.0
BcaC03g17639 Brassica carinata HOM05D001603 ORTHO05D001393 1.1e-50 203.0 102 91.2
A02p37320 Brassica napus HOM05D001603 ORTHO05D001393 1.9e-50 202.2 102 90.2
BraA02t08718Z Brassica rapa HOM05D001603 ORTHO05D001393 1.9e-50 202.2 102 90.2
C02p56390 Brassica napus HOM05D001603 ORTHO05D001393 9.4e-50 199.9 100 92.0
BolC2t11697H Brassica oleracea HOM05D001603 ORTHO05D001393 9.4e-50 199.9 100 92.0
BcaB07g30009 Brassica carinata HOM05D001603 ORTHO05D001393 3.1e-45 184.9 102 84.3
BcaB07g30008 Brassica carinata HOM05D001603 ORTHO05D001393 3.5e-44 181.4 102 83.3
A02p37330 Brassica napus HOM05D001603 ORTHO05D001393 2.0e-39 165.6 103 76.7
BraA02t08719Z Brassica rapa HOM05D001603 ORTHO05D001393 2.0e-39 165.6 103 76.7
BcaB07g30007 Brassica carinata HOM05D001603 ORTHO05D001393 9.1e-37 156.8 101 70.3
BcaC03g17637 Brassica carinata HOM05D001603 ORTHO05D001393 1.6e-36 156.0 101 71.3
C02p56360 Brassica napus HOM05D001603 ORTHO05D001393 7.7e-36 153.7 101 71.3
BolC2t11693H Brassica oleracea HOM05D001603 ORTHO05D001393 7.7e-36 153.7 101 71.3
BraA02t08716Z Brassica rapa HOM05D001603 ORTHO05D001393 1.7e-35 152.5 101 70.3
A02p37300 Brassica napus HOM05D001603 ORTHO05D001393 2.9e-35 151.8 101 70.3
BcaC06g30819 Brassica carinata HOM05D001603 ORTHO05D001393 2.5e-34 148.7 101 65.3
Thhalv10005180m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 1.8e-32 142.5 103 64.1
BcaC03g17640 Brassica carinata HOM05D001603 ORTHO05D001393 3.4e-31 138.3 88 73.9
Carub.0008s0778 Capsella rubella HOM05D001603 ORTHO05D001393 4.7e-25 117.9 111 53.2
AT5G48210 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 5.2e-24 114.4 101 55.4
CARHR184130 Cardamine hirsuta HOM05D001603 ORTHO05D001393 1.7e-22 109.4 101 54.5
AL8G20900 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 8.9e-16 87.0 72 61.1
CARHR042770 Cardamine hirsuta HOM05D001603 ORTHO05D001393 9.2e-13 77.0 110 40.9
CARHR181490 Cardamine hirsuta HOM05D001603 ORTHO05D001393 2.7e-12 75.5 104 39.4
AT4G09545 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 6.0e-12 74.3 111 40.5
Sp1g35035 Schrenkiella parvula HOM05D001603 ORTHO05D001393 6.0e-12 74.3 114 36.0
AT5G42895 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.7e-11 72.8 111 38.7
AT5G36350 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.0e-11 72.0 107 39.3
AT5G36360 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.0e-11 72.0 107 39.3
AT5G36380 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.0e-11 72.0 107 39.3
AT5G36390 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.0e-11 72.0 107 39.3
AT5G36400 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.0e-11 72.0 107 39.3
AT5G36410 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.0e-11 72.0 107 39.3
AT5G36420 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.0e-11 72.0 107 39.3
AT5G36430 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.0e-11 72.0 107 39.3
AT5G36440 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.0e-11 72.0 107 39.3
AT5G36450 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.0e-11 72.0 107 39.3
AT5G36460 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.0e-11 72.0 107 39.3
AT5G36470 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.0e-11 72.0 107 39.3
AT5G36480 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.0e-11 72.0 107 39.3
AT5G36520 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.0e-11 72.0 107 39.3
AT5G36490 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.9e-11 71.6 107 39.3
AT5G36550 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.9e-11 71.6 107 39.3
AT3G42565 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 5.0e-11 71.2 107 39.3
AT5G36370 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 5.0e-11 71.2 107 39.3
AT5G36500 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 5.0e-11 71.2 107 39.3
AT5G36540 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 5.0e-11 71.2 107 39.3
BcaC01g06072 Brassica carinata HOM05D001603 ORTHO05D001393 1.1e-10 70.1 77 44.2
BolC3t14309H Brassica oleracea HOM05D001603 ORTHO05D001393 1.1e-10 70.1 77 44.2
CARHR016560 Cardamine hirsuta HOM05D001603 ORTHO05D001393 1.5e-10 69.7 110 37.3
C03p19220 Brassica napus HOM05D001603 ORTHO05D001393 1.9e-10 69.3 77 44.2
RcHm_v2.0_Chr2g0131141 Rosa chinensis HOM05D001603 ORTHO05D001393 1.9e-10 69.3 103 40.8
RcHm_v2.0_Chr2g0131221 Rosa chinensis HOM05D001603 ORTHO05D001393 1.9e-10 69.3 103 40.8
TWI34G1934 Tripterygium wilfordii HOM05D001603 ORTHO05D001393 1.9e-10 69.3 100 36.0
AT5G36661 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.5e-10 68.9 107 38.3
AT5G36738 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.5e-10 68.9 107 38.3
Lj7A438G59 Lonicera japonica HOM05D001603 ORTHO05D001393 2.5e-10 68.9 100 38.0
AL5G28100 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 3.3e-10 68.6 99 37.4
AT5G36658 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.3e-10 68.6 107 37.4
A03p16340 Brassica napus HOM05D001603 ORTHO05D001393 4.3e-10 68.2 77 42.9
BraA03t10924Z Brassica rapa HOM05D001603 ORTHO05D001393 4.3e-10 68.2 77 42.9
Thhalv10005657m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 4.3e-10 68.2 93 38.7
THA.LOC104807824 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 4.3e-10 68.2 99 40.4
THA.LOC104809119 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 4.3e-10 68.2 72 43.1
A03p16350 Brassica napus HOM05D001603 ORTHO05D001393 5.6e-10 67.8 122 32.8
CSS0032619 Camellia sinensis var. sinensis HOM05D001603 ORTHO05D001393 9.5e-10 67.0 70 37.1
RcHm_v2.0_Chr2g0131241 Rosa chinensis HOM05D001603 ORTHO05D001393 9.5e-10 67.0 103 40.8
Gohir.D13G021050 Gossypium hirsutum HOM05D001603 ORTHO05D001393 1.2e-09 66.6 106 34.9
THA.LOC104807891 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 1.2e-09 66.6 82 41.5
THA.LOC104801737 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 1.6e-09 66.2 96 38.5
AT5G36310 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.1e-09 65.9 107 38.3
AT5G36340 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.1e-09 65.9 107 38.3
CARHR187420 Cardamine hirsuta HOM05D001603 ORTHO05D001393 2.1e-09 65.9 107 36.4
THA.LOC104807823 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 2.1e-09 65.9 87 37.9
Thecc.09G136800 Theobroma cacao HOM05D001603 ORTHO05D001393 2.1e-09 65.9 105 38.1
AT3G48675 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.8e-09 65.5 84 38.1
AT5G36657 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.8e-09 65.5 75 42.7
BcaC01g06071 Brassica carinata HOM05D001603 ORTHO05D001393 2.8e-09 65.5 77 40.3
C03p19230 Brassica napus HOM05D001603 ORTHO05D001393 2.8e-09 65.5 77 40.3
Gohir.A13G020450 Gossypium hirsutum HOM05D001603 ORTHO05D001393 2.8e-09 65.5 106 34.9
Gorai.N025500 Gossypium raimondii HOM05D001603 ORTHO05D001393 2.8e-09 65.5 106 34.9
Lj7C438T17 Lonicera japonica HOM05D001603 ORTHO05D001393 3.6e-09 65.1 96 36.5
Carub.0008s1450 Capsella rubella HOM05D001603 ORTHO05D001393 4.7e-09 64.7 81 39.5
AL8G25360 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 6.2e-09 64.3 120 33.3
AT5G36330 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 6.2e-09 64.3 107 37.4
BcaC01g06102 Brassica carinata HOM05D001603 ORTHO05D001393 1.1e-08 63.5 62 43.5
BcaC01g06105 Brassica carinata HOM05D001603 ORTHO05D001393 1.1e-08 63.5 62 43.5
A08p06940 Brassica napus HOM05D001603 ORTHO05D001393 1.1e-08 63.5 107 36.4
Carub.0008s1404 Capsella rubella HOM05D001603 ORTHO05D001393 1.1e-08 63.5 76 39.5
CARHR274670 Cardamine hirsuta HOM05D001603 ORTHO05D001393 1.1e-08 63.5 105 39.0
Carub.0008s1435 Capsella rubella HOM05D001603 ORTHO05D001393 1.4e-08 63.2 81 39.5
BcaC07g37175 Brassica carinata HOM05D001603 ORTHO05D001393 1.8e-08 62.8 101 38.6
A08p05250 Brassica napus HOM05D001603 ORTHO05D001393 2.3e-08 62.4 110 36.4
THA.LOC104811298 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 3.1e-08 62.0 71 43.7
AT5G36662 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.0e-08 61.6 107 36.4
AT5G36739 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.0e-08 61.6 107 36.4
BcaC07g37178 Brassica carinata HOM05D001603 ORTHO05D001393 5.2e-08 61.2 102 39.2
AT5G54062 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 6.8e-08 60.8 72 41.7
BcaC07g37177 Brassica carinata HOM05D001603 ORTHO05D001393 8.9e-08 60.5 75 44.0
BcaC07g37179 Brassica carinata HOM05D001603 ORTHO05D001393 8.9e-08 60.5 75 44.0
A08p05300 Brassica napus HOM05D001603 ORTHO05D001393 8.9e-08 60.5 75 44.0
C08p05610 Brassica napus HOM05D001603 ORTHO05D001393 8.9e-08 60.5 75 44.0
TWI34G1530 Tripterygium wilfordii HOM05D001603 ORTHO05D001393 8.9e-08 60.5 64 37.5
AT5G51105 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.2e-07 60.1 105 33.3
A08p05260 Brassica napus HOM05D001603 ORTHO05D001393 1.2e-07 60.1 110 35.5
TWI63G0036 Tripterygium wilfordii HOM05D001603 ORTHO05D001393 1.2e-07 60.1 63 34.9
BcaC07g37174 Brassica carinata HOM05D001603 ORTHO05D001393 1.5e-07 59.7 76 42.1
A08p06920 Brassica napus HOM05D001603 ORTHO05D001393 1.5e-07 59.7 78 41.0
A08p06930 Brassica napus HOM05D001603 ORTHO05D001393 1.5e-07 59.7 75 42.7
C08p05570 Brassica napus HOM05D001603 ORTHO05D001393 1.5e-07 59.7 75 44.0
A08p05270 Brassica napus HOM05D001603 ORTHO05D001393 2.0e-07 59.3 75 42.7
C08p05590 Brassica napus HOM05D001603 ORTHO05D001393 2.0e-07 59.3 75 44.0
THA.LOC104809637 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 2.6e-07 58.9 66 40.9
Thecc.09G136900 Theobroma cacao HOM05D001603 ORTHO05D001393 2.6e-07 58.9 112 32.1
Aqoxy6G02757 Aquilegia oxysepala HOM05D001603 ORTHO05D001393 3.4e-07 58.5 68 33.8
A08p05310 Brassica napus HOM05D001603 ORTHO05D001393 3.4e-07 58.5 76 40.8
CiPaw.03G252200 Carya illinoinensis HOM05D001603 ORTHO05D001393 4.4e-07 58.2 63 38.1
THA.LOC104811131 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 4.4e-07 58.2 62 41.9
THA.LOC104811299 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 4.4e-07 58.2 62 41.9
BcaC07g37231 Brassica carinata HOM05D001603 ORTHO05D001393 5.8e-07 57.8 75 42.7
A08p06950 Brassica napus HOM05D001603 ORTHO05D001393 5.8e-07 57.8 110 34.5
A08p06960 Brassica napus HOM05D001603 ORTHO05D001393 5.8e-07 57.8 78 42.3
COL.COLO4_33371 Corchorus olitorius HOM05D001603 ORTHO05D001393 5.8e-07 57.8 69 36.2
Atru.chr7.1960 Acer truncatum HOM05D001603 ORTHO05D001393 7.5e-07 57.4 71 33.8
AT5G36659 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 7.5e-07 57.4 95 37.9
Lsat_1_v5_gn_8_62881 Lactuca sativa HOM05D001603 ORTHO05D001393 7.5e-07 57.4 75 42.7
Peaxi162Scf01694g00006 Petunia axillaris HOM05D001603 ORTHO05D001393 7.5e-07 57.4 92 31.5
BcaC07g37176 Brassica carinata HOM05D001603 ORTHO05D001393 9.8e-07 57.0 102 36.3
Duzib187G1932 Durio zibethinus HOM05D001603 ORTHO05D001393 9.8e-07 57.0 106 33.0
Atru.chr7.1961 Acer truncatum HOM05D001603 ORTHO05D001393 1.3e-06 56.6 71 33.8
A08p05280 Brassica napus HOM05D001603 ORTHO05D001393 1.3e-06 56.6 102 35.3
A08p05320 Brassica napus HOM05D001603 ORTHO05D001393 1.3e-06 56.6 67 44.8
CARHR256980 Cardamine hirsuta HOM05D001603 ORTHO05D001393 1.3e-06 56.6 63 41.3
Sc18g0000140 Simmondsia chinensis HOM05D001603 ORTHO05D001393 1.3e-06 56.6 91 34.1
Gorai.013G023500 Gossypium raimondii HOM05D001603 ORTHO05D001393 1.7e-06 56.2 77 36.4
C08p05580 Brassica napus HOM05D001603 ORTHO05D001393 2.2e-06 55.8 75 42.7
MD09G1163700 Malus domestica HOM05D001603 ORTHO05D001393 2.2e-06 55.8 72 36.1
Atru.chr7.2004 Acer truncatum HOM05D001603 ORTHO05D001393 2.9e-06 55.5 71 33.8
C08p05560 Brassica napus HOM05D001603 ORTHO05D001393 3.7e-06 55.1 75 41.3
A08p05290 Brassica napus HOM05D001603 ORTHO05D001393 6.4e-06 54.3 67 43.3
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 8.3e-06 53.9 80 36.2
CARHR274650 Cardamine hirsuta HOM05D001603 ORTHO05D001393 8.3e-06 53.9 60 41.7
Glyma.05G187500 Glycine max HOM05D001595 ORTHO05D001573 8.3e-06 53.9 74 36.5


User provided reference genes

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