Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p36640 Brassica napus HOM05D006007 ORTHO05D007518 4.2e-301 1037.3 555 100.0
BraA02t08659Z Brassica rapa HOM05D006007 ORTHO05D007518 2.3e-299 1031.6 555 99.5
C02p55600 Brassica napus HOM05D006007 ORTHO05D007518 5.1e-259 897.5 557 90.7
BolC2t11616H Brassica oleracea HOM05D006007 ORTHO05D007518 5.1e-259 897.5 557 90.7
BcaC03g17580 Brassica carinata HOM05D006007 ORTHO05D007518 7.4e-258 893.6 557 89.9
BcaB07g30079 Brassica carinata HOM05D006007 ORTHO05D007518 2.0e-250 869.0 565 86.7
Thhalv10003901m.g Eutrema salsugineum HOM05D006007 ORTHO05D007518 3.8e-230 801.6 575 78.6
Sp2g17990 Schrenkiella parvula HOM05D006007 ORTHO05D007518 4.9e-225 784.6 566 80.7
AL5G19590 Arabidopsis lyrata HOM05D006007 ORTHO05D007518 7.0e-208 727.6 588 72.1
Carub.0005s0814 Capsella rubella HOM05D006007 ORTHO05D007518 4.0e-203 711.8 590 71.7
Aa31LG2G3900 Aethionema arabicum HOM05D006007 ORTHO05D007518 9.5e-197 690.6 585 70.4
AT3G29390 Arabidopsis thaliana HOM05D006007 ORTHO05D007518 7.3e-181 637.9 467 77.1
THA.LOC104823889 Tarenaya hassleriana HOM05D006007 ORTHO05D007518 3.4e-170 602.4 598 62.4
Gorai.007G082800 Gossypium raimondii HOM05D006007 ORTHO05D007518 3.6e-135 486.1 610 54.4
Duzib264G0491 Durio zibethinus HOM05D006007 ORTHO05D007518 8.0e-135 485.0 593 54.8
Gohir.A11G072800 Gossypium hirsutum HOM05D006007 ORTHO05D007518 6.7e-134 481.9 601 54.9
Thecc.04G095300 Theobroma cacao HOM05D006007 ORTHO05D007518 1.1e-133 481.1 583 54.7
Atru.chr8.458 Acer truncatum HOM05D006007 ORTHO05D007518 4.8e-132 475.7 582 53.3
Gohir.D11G077100 Gossypium hirsutum HOM05D006007 ORTHO05D007518 1.4e-131 474.2 610 53.6
TAR264G0002 Trochodendron aralioides HOM05D006007 ORTHO05D007518 1.8e-131 473.8 610 52.3
QL02p067640 Quercus lobata HOM05D006007 ORTHO05D007518 2.6e-130 469.9 603 52.2
Potri.017G093600 Populus trichocarpa HOM05D006007 ORTHO05D007518 4.5e-130 469.2 598 54.2
Dinv34943 Davidia involucrata HOM05D006007 ORTHO05D007518 2.5e-128 463.4 489 57.3
Manes.02G054700 Manihot esculenta HOM05D006007 ORTHO05D007518 5.5e-128 462.2 626 51.0
Ciclev10011374m.g Citrus clementina HOM05D006007 ORTHO05D007518 2.7e-127 459.9 602 51.3
Sabra17G0082500 Salix brachista HOM05D006007 ORTHO05D007518 1.0e-126 458.0 595 53.6
TWI32G0586 Tripterygium wilfordii HOM05D006007 ORTHO05D007518 1.8e-126 457.2 562 53.2
Nn4g23426 Nelumbo nucifera HOM05D006007 ORTHO05D007518 8.8e-126 454.9 587 52.3
RcHm_v2.0_Chr2g0165881 Rosa chinensis HOM05D006007 ORTHO05D007518 6.3e-124 448.7 604 51.7
PSO017G6380 Papaver somniferum HOM05D006007 ORTHO05D007518 2.4e-123 446.8 583 52.8
Cc07_g04190 Coffea canephora HOM05D006007 ORTHO05D007518 9.1e-123 444.9 600 50.3
FAN09G0451 Fragaria x ananassa HOM05D006007 ORTHO05D007518 2.0e-122 443.7 609 49.3
Cfa007665 Carpinus fangiana HOM05D006007 ORTHO05D007518 1.0e-121 441.4 607 49.6
PSO478G1877 Papaver somniferum HOM05D006007 ORTHO05D007518 1.3e-121 441.0 579 53.7
GSVIVG01032902001 Vitis vinifera HOM05D006007 ORTHO05D007518 2.9e-121 439.9 594 50.2
Cpa.g.sc14.172 Carica papaya HOM05D006007 ORTHO05D007518 5.0e-121 439.1 385 66.8
CSS0026219 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 8.5e-121 438.3 595 51.3
FAN05G3222 Fragaria x ananassa HOM05D006007 ORTHO05D007518 1.1e-120 438.0 623 47.8
CSS0007202 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 4.2e-120 436.0 595 51.4
COL.COLO4_07027 Corchorus olitorius HOM05D006007 ORTHO05D007518 2.7e-119 433.3 479 56.2
MSTRG.23885 Avicennia marina HOM05D006007 ORTHO05D007518 4.7e-119 432.6 595 49.6
CANSAT64G1701 Cannabis sativa HOM05D006007 ORTHO05D007518 1.8e-118 430.6 613 49.4
CiPaw.03G088800 Carya illinoinensis HOM05D006007 ORTHO05D007518 3.0e-118 429.9 604 49.8
FvH4_6g46910 Fragaria vesca HOM05D006007 ORTHO05D007518 2.0e-117 427.2 598 50.0
Haze_14433 Corylus avellana HOM05D006007 ORTHO05D007518 7.5e-117 425.2 486 55.8
Lalb_Chr17g0337001 Lupinus albus HOM05D006007 ORTHO05D007518 4.8e-116 422.5 610 49.0
CiPaw.04G055900 Carya illinoinensis HOM05D006007 ORTHO05D007518 1.4e-115 421.0 465 57.0
FAN02G0083 Fragaria x ananassa HOM05D006007 ORTHO05D007518 5.9e-114 415.6 616 48.7
Glyma.18G266400 Glycine max HOM05D006007 ORTHO05D007518 1.3e-113 414.5 648 46.0
FAN05G2596 Fragaria x ananassa HOM05D006007 ORTHO05D007518 5.0e-113 412.5 534 50.6
Prupe.3G255200 Prunus persica HOM05D006007 ORTHO05D007518 5.0e-113 412.5 478 55.4
Glyma.08G245100 Glycine max HOM05D006007 ORTHO05D007518 1.9e-112 410.6 519 51.4
Phvul.008G033600 Phaseolus vulgaris HOM05D006007 ORTHO05D007518 9.5e-112 408.3 552 50.0
EL10Ac2g03139 Beta vulgaris HOM05D006007 ORTHO05D007518 1.6e-111 407.5 580 49.8
Aqoxy3G03693 Aquilegia oxysepala HOM05D006007 ORTHO05D007518 2.1e-111 407.1 582 50.3
FAN14G4567 Fragaria x ananassa HOM05D006007 ORTHO05D007518 2.1e-111 407.1 619 47.8
Ca_04352_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 1.8e-110 404.1 643 46.7
Hund15552 Selenicereus undatus HOM05D006007 ORTHO05D007518 2.3e-110 403.7 476 53.8
Ah.10g032260 Amaranthus hybridus HOM05D006007 ORTHO05D007518 1.5e-109 401.0 528 50.6
AUR62018183 Chenopodium quinoa HOM05D006007 ORTHO05D007518 1.5e-109 401.0 451 55.2
Ca_30479_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 9.8e-109 398.3 516 50.8
Migut.H00628 Erythranthe guttata HOM05D006007 ORTHO05D007518 9.8e-109 398.3 480 52.7
Medtr7g013700 Medicago truncatula HOM05D006007 ORTHO05D007518 1.1e-107 394.8 622 46.9
Lj1g0023913 Lotus japonicus HOM05D006007 ORTHO05D007518 2.4e-107 393.7 627 48.0
CDE02G4269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 9.2e-107 391.7 580 47.2
DCAR_005549 Daucus carota HOM05D006007 ORTHO05D007518 1.2e-106 391.3 559 49.6
SalBow1G7079 Salvia bowleyana HOM05D006007 ORTHO05D007518 2.0e-106 390.6 464 53.0
arahy.Tifrunner.gnm1.ann1.J3LTHX Arachis hypogaea HOM05D006007 ORTHO05D007518 7.8e-106 388.7 523 50.7
CAN.G398.20 Capsicum annuum HOM05D006007 ORTHO05D007518 7.8e-106 388.7 584 47.1
arahy.Tifrunner.gnm1.ann1.EQE0CJ Arachis hypogaea HOM05D006007 ORTHO05D007518 1.0e-105 388.3 523 50.7
Nitab4.5_0000212g0230 Nicotiana tabacum HOM05D006007 ORTHO05D007518 1.7e-105 387.5 592 47.3
vmacro05632 Vaccinium macrocarpon HOM05D006007 ORTHO05D007518 1.7e-105 387.5 582 48.8
Solyc02g066940.4 Solanum lycopersicum HOM05D006007 ORTHO05D007518 1.5e-104 384.4 579 48.2
Peaxi162Scf00991g00329 Petunia axillaris HOM05D006007 ORTHO05D007518 1.9e-104 384.0 459 51.9
PGR004G1158 Punica granatum HOM05D006007 ORTHO05D007518 1.6e-103 380.9 527 47.8
ECA246G0757 Erigeron canadensis HOM05D006007 ORTHO05D007518 3.6e-103 379.8 556 47.5
Sed0005820 Sechium edule HOM05D006007 ORTHO05D007518 1.0e-102 378.3 612 44.9
PGSC0003DMG400025145 Solanum tuberosum HOM05D006007 ORTHO05D007518 1.0e-102 378.3 591 47.7
Sopen02g016130 Solanum pennellii HOM05D006007 ORTHO05D007518 1.8e-102 377.5 468 51.7
HPP92_007829 Vanilla planifolia HOM05D006007 ORTHO05D007518 2.0e-101 374.0 608 43.6
HanXRQChr17g0546081 Helianthus annuus HOM05D006007 ORTHO05D007518 2.6e-101 373.6 581 48.2
Rhsim10G0048800 Rhododendron simsii HOM05D006007 ORTHO05D007518 4.4e-101 372.9 578 45.0
unitig_52.g17640 Utricularia gibba HOM05D006007 ORTHO05D007518 3.7e-100 369.8 590 47.1
Zm00001eb008620 Zea mays HOM05D006007 ORTHO05D007518 5.4e-99 365.9 627 44.7
ATR0177G014 Amborella trichopoda HOM05D006007 ORTHO05D007518 9.2e-99 365.2 625 42.6
Lj4A118G52 Lonicera japonica HOM05D006007 ORTHO05D007518 4.6e-98 362.8 587 44.5
AUR62038668 Chenopodium quinoa HOM05D006007 ORTHO05D007518 5.0e-97 359.4 354 60.5
MELO3C022635.2 Cucumis melo HOM05D006007 ORTHO05D007518 1.5e-96 357.8 628 41.7
Oeu004412.3 Olea europaea HOM05D006007 ORTHO05D007518 1.5e-96 357.8 651 44.2
CsaV3_4G009190 Cucumis sativus L. HOM05D006007 ORTHO05D007518 6.2e-95 352.4 482 48.5
ClCG07G016350 Citrullus lanatus HOM05D006007 ORTHO05D007518 8.9e-94 348.6 522 46.6
Lsat_1_v5_gn_3_97780 Lactuca sativa HOM05D006007 ORTHO05D007518 7.0e-91 339.0 582 42.8
Psat3g201920 Pisum sativum HOM05D006007 ORTHO05D007518 1.6e-90 337.8 393 52.4
Nitab4.5_0010627g0030 Nicotiana tabacum HOM05D006007 ORTHO05D007518 5.4e-83 312.8 463 47.1
TPR.G33475 Trifolium pratense HOM05D006007 ORTHO05D007518 1.1e-78 298.5 218 71.6
SEGI_40404 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 9.2e-75 285.4 615 35.6
Mapoly0218s0012 Marchantia polymorpha HOM05D006007 ORTHO05D007518 6.0e-74 282.7 611 36.8
Hma1.2p1_0481F.1_g162140 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 1.9e-72 277.7 365 51.5
Hma1.2p1_0481F.1_g162150 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 1.9e-72 277.7 365 51.5
Eucgr.J01380 Eucalyptus grandis HOM05D006007 ORTHO05D007518 8.1e-71 272.3 401 50.6
MBI19_g00631_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 4.4e-69 266.5 271 56.5
HPP92_007749 Vanilla planifolia HOM05D006007 ORTHO05D007518 3.8e-68 263.5 286 54.2
Pp3c3_22820 Physcomitrium patens HOM05D006007 ORTHO05D007518 3.6e-63 246.9 518 36.7
MD09G1066300 Malus domestica HOM05D006007 ORTHO05D007518 1.8e-54 218.0 233 55.8
Sc10g0004660 Simmondsia chinensis HOM05D006007 ORTHO05D007518 7.6e-53 212.6 242 55.4
BcaC03g17562 Brassica carinata HOM05D006007 ORTHO05D007518 3.2e-51 207.2 228 57.9
MD09G1066400 Malus domestica HOM05D006007 ORTHO05D007518 3.5e-50 203.8 349 46.7
CBR_g19543 Chara braunii HOM05D006007 ORTHO05D007518 2.5e-48 197.6 451 36.4
BraA09t36042Z Brassica rapa HOM05D006007 ORTHO05D007518 5.3e-46 189.9 185 64.3
Sc10g0004670 Simmondsia chinensis HOM05D006007 ORTHO05D007518 2.9e-44 184.1 351 41.6
A09p04060 Brassica napus HOM05D006007 ORTHO05D010543 4.9e-44 183.3 186 64.0
CDE05G1269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 4.2e-43 180.3 216 49.5
MBI19_g00630_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 1.1e-40 172.2 342 43.6
SHI25685 Sapria himalayana HOM05D006007 ORTHO05D007518 1.0e-36 159.1 142 57.7
Oeu051018.1 Olea europaea HOM05D006007 ORTHO05D007518 1.6e-34 151.8 233 48.1
SEGI_00365 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 1.3e-31 142.1 129 56.6
Hma1.2p1_0481F.1_g162130 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 3.1e-30 137.5 172 51.7
Os03g0213900 Oryza sativa ssp. japonica HOM05D006007 ORTHO05D007518 5.3e-30 136.7 138 55.8
SHI25684 Sapria himalayana HOM05D006007 ORTHO05D007518 1.1e-24 119.0 162 47.5
BolC2t11584H Brassica oleracea HOM05D006007 ORTHO05D007518 1.5e-24 118.6 240 41.2
CARHR153030 Cardamine hirsuta HOM05D006007 ORTHO05D007518 1.7e-23 115.2 65 89.2
Cre09.g389900 Chlamydomonas reinhardtii HOM05D006007 ORTHO05D007518 1.2e-21 109.0 379 27.2
CDE05G3437 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 2.0e-16 91.7 245 35.9
MBI15_g14467_MAGBIO Magnolia biondii HOM05D003623 ORTHO05D007518 1.5e-11 75.5 164 36.6
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 3.6e-10 70.9 39 87.2
HPP92_007750 Vanilla planifolia HOM05D006007 ORTHO05D007518 4.0e-09 67.4 107 47.7
CARHR284270 Cardamine hirsuta HOM05D006007 ORTHO05D007518 9.7e-08 62.8 45 71.1
Cpa.g.sc14.174 Carica papaya HOM05D006007 ORTHO05D007518 1.4e-06 58.9 68 48.5


User provided reference genes

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