Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p36530 Brassica napus HOM05D005710 ORTHO05D004657 3.4e-273 944.5 520 100.0
BraA02t08649Z Brassica rapa HOM05D005710 ORTHO05D004657 1.7e-248 862.4 478 99.4
BcaC03g17571 Brassica carinata HOM05D005710 ORTHO05D004657 4.6e-217 758.1 481 86.9
C02p55500 Brassica napus HOM05D005710 ORTHO05D004657 1.6e-209 733.0 488 84.0
BolC2t11608H Brassica oleracea HOM05D005710 ORTHO05D004657 1.6e-209 733.0 488 84.0
Sp2g17910 Schrenkiella parvula HOM05D005710 ORTHO05D004657 1.2e-164 583.9 551 65.5
BcaB07g30084 Brassica carinata HOM05D005710 ORTHO05D004657 1.3e-155 553.9 502 67.5
Thhalv10003979m.g Eutrema salsugineum HOM05D005710 ORTHO05D004657 2.1e-137 493.4 503 62.6
AT3G29310 Arabidopsis thaliana HOM05D005710 ORTHO05D004657 2.4e-125 453.4 591 54.7
AL5G19350 Arabidopsis lyrata HOM05D005710 ORTHO05D004657 1.2e-119 434.5 553 55.3
Aa31LG2G3970 Aethionema arabicum HOM05D005710 ORTHO05D004657 3.7e-118 429.5 562 56.2
CARHR154030 Cardamine hirsuta HOM05D005710 ORTHO05D004657 6.3e-118 428.7 611 52.0
Carub.0005s0802 Capsella rubella HOM05D005710 ORTHO05D004657 1.2e-116 424.5 540 57.8
A06p39970 Brassica napus HOM05D005710 ORTHO05D004657 8.0e-113 411.8 499 56.5
BraA06t26912Z Brassica rapa HOM05D005710 ORTHO05D004657 8.0e-113 411.8 499 56.5
THA.LOC104823892 Tarenaya hassleriana HOM05D005710 ORTHO05D004657 1.8e-88 330.9 558 44.8
THA.LOC104805502 Tarenaya hassleriana HOM05D005710 ORTHO05D004657 9.2e-85 318.5 556 47.3
Thhalv10027716m.g Eutrema salsugineum HOM05D005710 ORTHO05D004657 1.0e-83 315.1 563 47.4
C07p38200 Brassica napus HOM05D005710 ORTHO05D004657 8.9e-80 302.0 278 63.7
Aa31LG9G16660 Aethionema arabicum HOM05D005710 ORTHO05D004657 1.0e-75 288.5 538 42.0
BcaC08g44413 Brassica carinata HOM05D005710 ORTHO05D004657 1.1e-66 258.5 509 42.4
C06p18500 Brassica napus HOM05D005710 ORTHO05D004657 1.1e-66 258.5 509 42.4
BcaB02g07987 Brassica carinata HOM05D005710 ORTHO05D004657 6.2e-65 252.7 516 42.1
BolC6t37063H Brassica oleracea HOM05D005710 ORTHO05D004657 5.1e-59 233.0 504 43.3
BcaC06g33686 Brassica carinata HOM05D005710 ORTHO05D004657 1.9e-58 231.1 359 47.9
Cpa.g.sc14.156 Carica papaya HOM05D005710 ORTHO05D004657 6.5e-46 189.5 525 35.8
Ciclev10011685m.g Citrus clementina HOM05D005710 ORTHO05D004657 2.6e-39 167.5 406 36.7
Sabra17G0080200 Salix brachista HOM05D005710 ORTHO05D004657 1.4e-37 161.8 510 32.7
Atru.chr8.406 Acer truncatum HOM05D005710 ORTHO05D004657 2.1e-36 157.9 325 38.2
TWI60G1009 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 6.1e-36 156.4 383 39.4
Thecc.04G091900 Theobroma cacao HOM05D005710 ORTHO05D004657 7.9e-36 156.0 482 32.6
Manes.01G098200 Manihot esculenta HOM05D005710 ORTHO05D004657 3.9e-35 153.7 447 34.2
TWI34G1348 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 8.8e-35 152.5 403 36.2
Gorai.006G011600 Gossypium raimondii HOM05D005710 ORTHO05D004657 2.0e-34 151.4 311 37.6
CiPaw.04G057600 Carya illinoinensis HOM05D005710 ORTHO05D004657 9.7e-34 149.1 507 33.1
Gohir.D09G010000 Gossypium hirsutum HOM05D005710 ORTHO05D004657 3.7e-33 147.1 386 33.9
Cfa007637 Carpinus fangiana HOM05D005710 ORTHO05D004657 6.3e-33 146.4 403 34.5
Potri.017G091100 Populus trichocarpa HOM05D005710 ORTHO05D004657 6.3e-33 146.4 438 34.2
FAN05G5426 Fragaria x ananassa HOM05D005710 ORTHO05D004657 1.8e-32 144.8 414 34.3
FAN09G1437 Fragaria x ananassa HOM05D005710 ORTHO05D004657 1.8e-32 144.8 414 34.3
TWI32G0095 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 2.4e-32 144.4 398 33.2
Gohir.A09G010900 Gossypium hirsutum HOM05D005710 ORTHO05D004657 3.1e-32 144.1 463 29.8
MD09G1062500 Malus domestica HOM05D005710 ORTHO05D004657 4.1e-32 143.7 416 33.9
COL.COLO4_03731 Corchorus olitorius HOM05D005710 ORTHO05D004657 1.5e-31 141.7 399 34.6
Prupe.3G257800 Prunus persica HOM05D005710 ORTHO05D004657 1.5e-31 141.7 479 31.3
Duzib147G0411 Durio zibethinus HOM05D005710 ORTHO05D004657 2.0e-31 141.4 465 31.6
QL02p039943 Quercus lobata HOM05D005710 ORTHO05D004657 5.9e-31 139.8 375 34.7
Sp7g02650 Schrenkiella parvula HOM05D005710 ORTHO05D004657 1.1e-29 135.6 313 41.5
FAN14G2617 Fragaria x ananassa HOM05D005710 ORTHO05D004657 2.5e-29 134.4 484 30.2
FvH4_6g47270 Fragaria vesca HOM05D005710 ORTHO05D004657 5.5e-29 133.3 484 29.8
Lj1g0027832 Lotus japonicus HOM05D005710 ORTHO05D004657 7.2e-29 132.9 475 29.5
RcHm_v2.0_Chr2g0166341 Rosa chinensis HOM05D005710 ORTHO05D004657 9.4e-29 132.5 403 31.3
SalBow7G3425 Salvia bowleyana HOM05D005710 ORTHO05D004657 9.4e-29 132.5 233 41.2
Lsat_1_v5_gn_3_98801 Lactuca sativa HOM05D005710 ORTHO05D004657 1.2e-28 132.1 361 34.1
Duzib187G0917 Durio zibethinus HOM05D005710 ORTHO05D004657 1.6e-28 131.7 468 29.7
PGR004G2722 Punica granatum HOM05D005710 ORTHO05D004657 3.6e-28 130.6 255 41.2
CANSAT64G1937 Cannabis sativa HOM05D005710 ORTHO05D004657 6.1e-28 129.8 438 32.2
Hma1.2p1_0481F.1_g161930 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 1.4e-27 128.6 424 32.3
HanXRQChr15g0473071 Helianthus annuus HOM05D005710 ORTHO05D004657 2.3e-27 127.9 226 38.5
Dinv34961 Davidia involucrata HOM05D005710 ORTHO05D004657 3.0e-27 127.5 141 53.9
Phvul.008G035100 Phaseolus vulgaris HOM05D005710 ORTHO05D004657 8.8e-27 125.9 311 36.3
Actinidia07818 Actinidia chinensis HOM05D005710 ORTHO05D004657 1.5e-26 125.2 357 35.0
Actinidia01981 Actinidia chinensis HOM05D005710 ORTHO05D004657 2.6e-26 124.4 334 34.4
Lalb_Chr17g0337061 Lupinus albus HOM05D005710 ORTHO05D004657 2.6e-26 124.4 443 28.9
Nitab4.5_0008213g0040 Nicotiana tabacum HOM05D005710 ORTHO05D004657 3.3e-26 124.0 316 35.1
MD00G1156300 Malus domestica HOM05D005710 ORTHO05D004657 1.3e-25 122.1 306 36.6
Rhsim08G0074100 Rhododendron simsii HOM05D005710 ORTHO05D004657 2.2e-25 121.3 369 31.7
Solyc02g088660.4 Solanum lycopersicum HOM05D005710 ORTHO05D004657 2.2e-25 121.3 213 40.4
arahy.Tifrunner.gnm1.ann1.B1JWTK Arachis hypogaea HOM05D005710 ORTHO05D004657 2.8e-25 120.9 362 32.0
DCAR_011051 Daucus carota HOM05D005710 ORTHO05D004657 2.8e-25 120.9 415 29.4
PSO017G2516 Papaver somniferum HOM05D005710 ORTHO05D004657 2.8e-25 120.9 158 48.1
ECA246G0940 Erigeron canadensis HOM05D005710 ORTHO05D004657 3.7e-25 120.6 128 52.3
Nitab4.5_0000565g0150 Nicotiana tabacum HOM05D005710 ORTHO05D004657 3.7e-25 120.6 347 33.1
CsaV3_5G038440 Cucumis sativus L. HOM05D005710 ORTHO05D004657 6.3e-25 119.8 475 28.6
Eucgr.I01977 Eucalyptus grandis HOM05D005710 ORTHO05D004657 6.3e-25 119.8 384 33.9
TPR.G33463 Trifolium pratense HOM05D005710 ORTHO05D004657 2.4e-24 117.9 369 31.4
VMungo1383G0251 Vigna mungo HOM05D005710 ORTHO05D004657 2.4e-24 117.9 371 34.5
Psat3g200880 Pisum sativum HOM05D005710 ORTHO05D004657 3.1e-24 117.5 320 33.4
Sed0007565 Sechium edule HOM05D005710 ORTHO05D004657 3.1e-24 117.5 460 28.5
Medtr7g012940 Medicago truncatula HOM05D005710 ORTHO05D004657 4.1e-24 117.1 398 29.9
ClCG11G004670 Citrullus lanatus HOM05D005710 ORTHO05D004657 9.1e-24 115.9 182 43.4
Aqoxy3G03578 Aquilegia oxysepala HOM05D005710 ORTHO05D004657 1.2e-23 115.5 103 61.2
arahy.Tifrunner.gnm1.ann1.EE1ZRN Arachis hypogaea HOM05D005710 ORTHO05D004657 1.2e-23 115.5 355 31.5
TAR629G0087 Trochodendron aralioides HOM05D005710 ORTHO05D004657 1.2e-23 115.5 179 44.1
PSO478G1813 Papaver somniferum HOM05D005710 ORTHO05D004657 2.0e-23 114.8 287 34.1
AUR62042434 Chenopodium quinoa HOM05D005710 ORTHO05D004657 3.5e-23 114.0 175 41.1
Hund13162 Selenicereus undatus HOM05D005710 ORTHO05D004657 3.5e-23 114.0 335 30.7
Migut.K01286 Erythranthe guttata HOM05D005710 ORTHO05D004657 4.5e-23 113.6 497 32.8
Glyma.08G242700 Glycine max HOM05D005710 ORTHO05D004657 4.5e-23 113.6 455 30.1
MELO3C022025.2 Cucumis melo HOM05D005710 ORTHO05D004657 5.9e-23 113.2 502 29.9
SGA_v2.0_scaffold52G19180 Striga asiatica HOM05D005710 ORTHO05D004657 7.7e-23 112.8 287 34.5
BcaC06g30873 Brassica carinata HOM05D005710 ORTHO05D004657 2.2e-22 111.3 160 49.4
Cc07_g04040 Coffea canephora HOM05D005710 ORTHO05D004657 3.8e-22 110.5 351 30.8
Oeu025712.1 Olea europaea HOM05D005710 ORTHO05D004657 3.8e-22 110.5 480 29.2
Manes.02G052100 Manihot esculenta HOM05D005710 ORTHO05D004657 1.9e-21 108.2 519 29.3
CSS0045690 Camellia sinensis var. sinensis HOM05D005710 ORTHO05D004657 3.2e-21 107.5 458 29.0
Hund15554 Selenicereus undatus HOM05D005710 ORTHO05D004657 4.2e-21 107.1 174 41.4
EL10Ac2g03101 Beta vulgaris HOM05D005710 ORTHO05D004657 9.4e-21 105.9 356 30.1
Glyma.18G264900 Glycine max HOM05D005710 ORTHO05D004657 2.1e-20 104.8 463 28.3
Sc11g0004700 Simmondsia chinensis HOM05D005710 ORTHO05D004657 2.7e-20 104.4 448 30.6
vmacro18155 Vaccinium macrocarpon HOM05D005710 ORTHO05D004657 4.7e-20 103.6 416 29.3
CAN.G206.210 Capsicum annuum HOM05D005710 ORTHO05D004657 6.1e-20 103.2 337 32.0
Ah.10g032010 Amaranthus hybridus HOM05D005710 ORTHO05D004657 1.4e-19 102.1 387 28.4
Haze_14462 Corylus avellana HOM05D005710 ORTHO05D004657 8.8e-19 99.4 401 29.9
AUR62018163 Chenopodium quinoa HOM05D005710 ORTHO05D004657 2.0e-18 98.2 434 28.3
SGA_v2.0_scaffold4G02406 Striga asiatica HOM05D005710 ORTHO05D004657 2.0e-18 98.2 242 33.5
MBI16_g30408_MAGBIO Magnolia biondii HOM05D001913 ORTHO05D001880 1.3e-17 95.5 193 38.9
Os05g0512400 Oryza sativa ssp. japonica HOM05D005710 ORTHO05D004657 4.8e-17 93.6 183 37.2
Peaxi162Scf00166g00643 Petunia axillaris HOM05D005710 ORTHO05D004657 7.0e-16 89.7 138 43.5
CDE07G0246 Ceratophyllum demersum HOM05D001913 ORTHO05D001880 1.2e-15 89.0 237 33.3
HPP92_019480 Vanilla planifolia HOM05D005710 ORTHO05D004657 2.0e-15 88.2 262 32.1
A07p19920 Brassica napus HOM05D005710 ORTHO05D004657 5.9e-15 86.7 173 44.5
Zm00001eb352990 Zea mays HOM05D005710 ORTHO05D004657 1.3e-14 85.5 184 36.4
BolC7t44342H Brassica oleracea HOM05D005710 ORTHO05D004657 2.9e-14 84.3 103 55.3
Haze_14452 Corylus avellana HOM05D005710 ORTHO05D004657 2.5e-13 81.3 299 27.4
SalBow2G0426 Salvia bowleyana HOM05D005710 ORTHO05D004657 1.2e-12 79.0 83 56.6
Hma1.2p1_1813F.1_g303710 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 2.7e-12 77.8 300 30.0
SEGI_24397 Sequoiadendron giganteum HOM05D005186 ORTHO05D006278 3.0e-11 74.3 140 38.6
AL3G48400 Arabidopsis lyrata HOM05D005710 ORTHO05D004657 1.1e-08 65.9 55 63.6
Medtr4g036110 Medicago truncatula HOM05D005186 ORTHO05D006278 4.5e-07 60.5 119 34.5
Glyma.12G005300 Glycine max HOM05D005186 ORTHO05D006278 5.9e-07 60.1 156 30.8
Phvul.011G006100 Phaseolus vulgaris HOM05D005186 ORTHO05D006278 7.7e-07 59.7 147 31.3
Ca_25005_v3 Cicer arietinum L. HOM05D005186 ORTHO05D006278 1.0e-06 59.3 180 28.9
Psat7g207000 Pisum sativum HOM05D005186 ORTHO05D006278 1.0e-06 59.3 181 29.3
VMungo1127G0816 Vigna mungo HOM05D005186 ORTHO05D006278 1.7e-06 58.5 133 33.1
arahy.Tifrunner.gnm1.ann1.UNN1LQ Arachis hypogaea HOM05D005186 ORTHO05D006278 2.2e-06 58.2 122 35.2
BcaNung02779 Brassica carinata HOM05D005186 ORTHO05D006278 2.2e-06 58.2 103 39.8
A01p12890 Brassica napus HOM05D005186 ORTHO05D006278 2.2e-06 58.2 103 39.8
C01p15530 Brassica napus HOM05D005186 ORTHO05D006278 2.2e-06 58.2 103 39.8
BolC1t01505H Brassica oleracea HOM05D005186 ORTHO05D006278 2.2e-06 58.2 103 39.8
BraA01t01233Z Brassica rapa HOM05D005186 ORTHO05D006278 2.2e-06 58.2 103 39.8
arahy.Tifrunner.gnm1.ann1.7NC073 Arachis hypogaea HOM05D005186 ORTHO05D006278 2.9e-06 57.8 122 34.4
Lj3g0017931 Lotus japonicus HOM05D005186 ORTHO05D006278 2.9e-06 57.8 122 36.1
SalBow3G1747 Salvia bowleyana HOM05D005710 ORTHO05D004657 2.9e-06 57.8 130 33.1
TPR.G3671 Trifolium pratense HOM05D005186 ORTHO05D006278 2.9e-06 57.8 177 30.5
Glyma.09G231200 Glycine max HOM05D005186 ORTHO05D006278 3.8e-06 57.4 133 31.6
Carub.0008s2307 Capsella rubella HOM05D005186 ORTHO05D006278 5.0e-06 57.0 105 39.0
Nn6g34030 Nelumbo nucifera HOM05D005186 ORTHO05D006278 5.0e-06 57.0 133 33.8
QL09p019611 Quercus lobata HOM05D005186 ORTHO05D006278 5.0e-06 57.0 103 38.8
THA.LOC104821410 Tarenaya hassleriana HOM05D005186 ORTHO05D006278 5.0e-06 57.0 102 36.3
EL10Ac3g05838 Beta vulgaris HOM05D005186 ORTHO05D006278 6.5e-06 56.6 103 39.8
C03p64500 Brassica napus HOM05D005186 ORTHO05D006278 6.5e-06 56.6 103 38.8
Pp3c19_17670 Physcomitrium patens HOM05D006269 ORTHO05D001487 6.5e-06 56.6 105 36.2
Migut.F00469 Erythranthe guttata HOM05D005186 ORTHO05D006278 8.5e-06 56.2 115 36.5
Thhalv10004201m.g Eutrema salsugineum HOM05D005186 ORTHO05D006278 8.5e-06 56.2 105 37.1


User provided reference genes

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