Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p36290 Brassica napus HOM05D008101 ORTHO05D010163 1.1e-30 136.3 88 100.0
BraA02t08628Z Brassica rapa HOM05D008101 ORTHO05D010163 1.1e-30 136.3 88 100.0
C02p56620 Brassica napus HOM05D008101 ORTHO05D010163 2.5e-30 135.2 88 98.9
BcaC03g17658 Brassica carinata HOM05D008101 ORTHO05D010163 1.6e-29 132.5 88 86.4
BolC2t11721H Brassica oleracea HOM05D008101 ORTHO05D010163 1.6e-29 132.5 88 86.4
BcaB07g30101 Brassica carinata HOM05D008101 ORTHO05D010163 6.7e-28 127.1 88 93.2
BcaC06g30874 Brassica carinata HOM05D008101 ORTHO05D010163 8.7e-28 126.7 88 86.4
BcaC06g33664 Brassica carinata HOM05D008101 ORTHO05D010163 8.7e-28 126.7 88 81.8
BcaC06g33665 Brassica carinata HOM05D008101 ORTHO05D010163 8.7e-28 126.7 88 81.8
C07p37940 Brassica napus HOM05D008101 ORTHO05D010163 8.7e-28 126.7 88 81.8
BolC7t44316H Brassica oleracea HOM05D008101 ORTHO05D010163 8.7e-28 126.7 88 81.8
BcaC03g17547 Brassica carinata HOM05D008101 ORTHO05D010163 1.1e-27 126.3 88 90.9
C02p55260 Brassica napus HOM05D008101 ORTHO05D010163 1.1e-27 126.3 88 90.9
BolC2t11574H Brassica oleracea HOM05D008101 ORTHO05D010163 5.6e-27 124.0 88 89.8
A06p40170 Brassica napus HOM05D008101 ORTHO05D010163 7.4e-27 123.6 88 80.7
BraA06t26932Z Brassica rapa HOM05D008101 ORTHO05D010163 7.4e-27 123.6 88 80.7
AT3G29034 Arabidopsis thaliana HOM05D008101 ORTHO05D010163 1.4e-25 119.4 88 78.4
Carub.0005s0764 Capsella rubella HOM05D008101 ORTHO05D010163 2.6e-24 115.2 88 75.0
AL5G18900 Arabidopsis lyrata HOM05D008101 ORTHO05D010163 3.4e-24 114.8 88 75.0
Sp2g17670 Schrenkiella parvula HOM05D008101 ORTHO05D010163 5.8e-24 114.0 88 87.5
CARHR152140 Cardamine hirsuta HOM05D008101 ORTHO05D010163 2.2e-23 112.1 88 73.9
Sp7g02370 Schrenkiella parvula HOM05D008101 ORTHO05D010163 1.8e-17 92.4 85 63.5
Carub.0007s3631 Capsella rubella HOM05D008101 ORTHO05D010163 6.9e-17 90.5 88 62.5
Aa31LG2G4160 Aethionema arabicum HOM05D008101 ORTHO05D010163 4.5e-16 87.8 57 78.9
THA.LOC109116617 Tarenaya hassleriana HOM05D008101 ORTHO05D010163 4.5e-16 87.8 60 78.3
Prupe.3G265300 Prunus persica HOM05D008101 ORTHO05D010163 1.8e-09 65.9 52 67.3
Lj2g0000476 Lotus japonicus HOM05D008101 ORTHO05D010163 9.1e-09 63.5 53 60.4
Gohir.D07G212050 Gossypium hirsutum HOM05D008101 ORTHO05D010163 1.5e-08 62.8 52 63.5
Gorai.001G239800 Gossypium raimondii HOM05D008101 ORTHO05D010163 1.5e-08 62.8 52 63.5
CAN.G206.165 Capsicum annuum HOM05D008101 ORTHO05D010163 2.0e-08 62.4 52 65.4
Glyma.13G062100 Glycine max HOM05D008101 ORTHO05D010163 2.0e-08 62.4 53 62.3
Gohir.A07G206000 Gossypium hirsutum HOM05D008101 ORTHO05D010163 2.0e-08 62.4 52 61.5
Potri.010G234200 Populus trichocarpa HOM05D008101 ORTHO05D010163 2.0e-08 62.4 52 65.4
Sopen02g032840 Solanum pennellii HOM05D008101 ORTHO05D010163 2.0e-08 62.4 52 63.5
Thecc.04G085600 Theobroma cacao HOM05D008101 ORTHO05D010163 2.0e-08 62.4 52 61.5
Cc07_g03530 Coffea canephora HOM05D008101 ORTHO05D010163 5.9e-08 60.8 51 62.7
MD09G1053300 Malus domestica HOM05D008101 ORTHO05D010163 5.9e-08 60.8 48 68.8
Sed0001905 Sechium edule HOM05D008101 ORTHO05D010163 7.7e-08 60.5 52 59.6
Migut.H00938 Erythranthe guttata HOM05D008101 ORTHO05D010163 1.3e-07 59.7 52 61.5
Solyc02g088130.1 Solanum lycopersicum HOM05D008101 ORTHO05D010163 1.3e-07 59.7 50 64.0
Medtr6g012640 Medicago truncatula HOM05D008101 ORTHO05D010163 1.7e-07 59.3 52 59.6
PGR083G0374 Punica granatum HOM05D008101 ORTHO05D010163 2.9e-07 58.5 52 59.6
CSS0047461 Camellia sinensis var. sinensis HOM05D008101 ORTHO05D010163 3.8e-07 58.2 52 55.8
Dinv33773 Davidia involucrata HOM05D008101 ORTHO05D010163 5.0e-07 57.8 50 54.0
CiPaw.03G024700 Carya illinoinensis HOM05D008101 ORTHO05D010163 1.9e-06 55.8 52 57.7
Manes.02G047600 Manihot esculenta HOM05D008101 ORTHO05D010163 2.5e-06 55.5 51 58.8
RcHm_v2.0_Chr2g0167541 Rosa chinensis HOM05D008101 ORTHO05D010163 4.2e-06 54.7 52 55.8
Phvul.004G030000 Phaseolus vulgaris HOM05D008101 ORTHO05D010163 5.5e-06 54.3 53 52.8
RcHm_v2.0_Chr2g0167501 Rosa chinensis HOM05D008101 ORTHO05D010163 9.4e-06 53.5 52 53.8


User provided reference genes

Program Settings