Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p34700 Brassica napus HOM05D006071 ORTHO05D007462 0.0e+00 1432.9 760 100.0
BraA02t08478Z Brassica rapa HOM05D006071 ORTHO05D007462 0.0e+00 1401.0 761 97.5
C02p53260 Brassica napus HOM05D006071 ORTHO05D007462 0.0e+00 1325.8 761 92.6
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 0.0e+00 1317.8 756 92.6
BolC2t11398H Brassica oleracea HOM05D006071 ORTHO05D007462 0.0e+00 1280.0 761 90.0
BcaB07g30217 Brassica carinata HOM05D006071 ORTHO05D007462 0.0e+00 1187.2 682 91.2
Sp2g15850 Schrenkiella parvula HOM05D006071 ORTHO05D007462 0.0e+00 1139.0 764 81.8
Thhalv10003691m.g Eutrema salsugineum HOM05D006071 ORTHO05D007462 0.0e+00 1109.7 771 78.0
CARHR147750 Cardamine hirsuta HOM05D006071 ORTHO05D007462 0.0e+00 1075.1 771 76.9
Carub.0005s0473 Capsella rubella HOM05D006071 ORTHO05D007462 2.7e-303 1045.0 779 76.6
Aa31LG2G5830 Aethionema arabicum HOM05D006071 ORTHO05D007462 6.7e-302 1040.4 773 74.5
AT3G26730 Arabidopsis thaliana HOM05D006071 ORTHO05D007462 2.4e-299 1031.9 782 75.1
AL5G15580 Arabidopsis lyrata HOM05D006071 ORTHO05D007462 9.1e-299 1030.0 771 76.7
THA.LOC104805300 Tarenaya hassleriana HOM05D006071 ORTHO05D007462 3.3e-256 888.6 770 67.7
Thecc.04G047500 Theobroma cacao HOM05D006071 ORTHO05D007462 3.3e-192 676.0 778 52.7
Dinv33279 Davidia involucrata HOM05D006071 ORTHO05D007462 4.4e-184 649.0 782 51.2
Ciclev10014332m.g Citrus clementina HOM05D006071 ORTHO05D007462 5.7e-184 648.7 832 48.1
Gohir.D10G081100 Gossypium hirsutum HOM05D006071 ORTHO05D007462 7.4e-184 648.3 774 51.6
FAN09G3006 Fragaria x ananassa HOM05D006071 ORTHO05D007462 8.2e-183 644.8 783 51.1
arahy.Tifrunner.gnm1.ann1.FR25D6 Arachis hypogaea HOM05D006071 ORTHO05D007462 1.8e-182 643.7 789 50.2
Gorai.011G088400 Gossypium raimondii HOM05D006071 ORTHO05D007462 1.8e-182 643.7 775 51.6
arahy.Tifrunner.gnm1.ann1.FMKW1Y Arachis hypogaea HOM05D006071 ORTHO05D007462 4.1e-182 642.5 788 50.0
RcHm_v2.0_Chr2g0176461 Rosa chinensis HOM05D006071 ORTHO05D007462 4.1e-182 642.5 742 51.1
Manes.11G077000 Manihot esculenta HOM05D006071 ORTHO05D007462 5.9e-181 638.6 788 49.4
QL02p069613 Quercus lobata HOM05D006071 ORTHO05D007462 1.3e-180 637.5 733 52.9
Prupe.3G313200 Prunus persica HOM05D006071 ORTHO05D007462 3.2e-179 632.9 746 51.6
TWI32G0148 Tripterygium wilfordii HOM05D006071 ORTHO05D007462 1.6e-178 630.6 785 49.9
Gohir.A10G070000 Gossypium hirsutum HOM05D006071 ORTHO05D007462 5.2e-177 625.5 781 49.7
MD17G1007100 Malus domestica HOM05D006071 ORTHO05D007462 5.2e-177 625.5 751 49.8
PGR142G0457 Punica granatum HOM05D006071 ORTHO05D007462 1.2e-176 624.4 780 50.4
Duzib187G0315 Durio zibethinus HOM05D006071 ORTHO05D007462 2.6e-176 623.2 781 50.6
Potri.014G145300 Populus trichocarpa HOM05D006071 ORTHO05D007462 4.4e-176 622.5 777 50.3
Lalb_Chr24g0403151 Lupinus albus HOM05D006071 ORTHO05D007462 5.7e-176 622.1 779 49.3
TPR.G10339 Trifolium pratense HOM05D006071 ORTHO05D007462 3.7e-175 619.4 783 49.6
FAN14G4217 Fragaria x ananassa HOM05D006071 ORTHO05D007462 8.2e-175 618.2 818 48.9
Medtr7g084020 Medicago truncatula HOM05D006071 ORTHO05D007462 1.4e-174 617.5 783 50.6
Hma1.2p1_0421F.1_g149970 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 1.8e-174 617.1 753 49.9
Ca_08138_v3 Cicer arietinum L. HOM05D006071 ORTHO05D007462 3.1e-174 616.3 736 52.2
Haze_14947 Corylus avellana HOM05D006071 ORTHO05D007462 7.0e-174 615.1 826 47.1
Phvul.001G084800 Phaseolus vulgaris HOM05D006071 ORTHO05D007462 7.0e-174 615.1 749 50.1
Glyma.19G103000 Glycine max HOM05D006071 ORTHO05D007462 1.7e-172 610.5 745 49.9
Lj1g0026027 Lotus japonicus HOM05D006071 ORTHO05D007462 6.5e-172 608.6 756 49.1
Glyma.16G048700 Glycine max HOM05D006071 ORTHO05D007462 1.2e-170 604.4 635 54.8
VMungo1383G1903 Vigna mungo HOM05D006071 ORTHO05D007462 2.7e-170 603.2 747 49.4
Rhsim10G0001400 Rhododendron simsii HOM05D006071 ORTHO05D007462 6.1e-170 602.1 621 53.8
MD09G1003000 Malus domestica HOM05D006071 ORTHO05D007462 4.0e-169 599.4 695 51.7
CANSAT64G2805 Cannabis sativa HOM05D006071 ORTHO05D007462 1.5e-168 597.4 796 48.2
DCAR_014471 Daucus carota HOM05D006071 ORTHO05D007462 2.0e-168 597.0 637 54.5
EL10Ac6g13395 Beta vulgaris HOM05D006071 ORTHO05D007462 4.4e-168 595.9 781 48.3
Migut.K01485 Erythranthe guttata HOM05D006071 ORTHO05D007462 4.8e-167 592.4 780 47.8
ClCG05G012640 Citrullus lanatus HOM05D006071 ORTHO05D007462 2.4e-166 590.1 785 48.3
Lju41A60G26 Lonicera japonica HOM05D006071 ORTHO05D007462 4.1e-166 589.3 768 48.3
MELO3C014817.2 Cucumis melo HOM05D006071 ORTHO05D007462 4.5e-165 585.9 783 47.9
CiPaw.03G002300 Carya illinoinensis HOM05D006071 ORTHO05D007462 1.0e-164 584.7 593 54.0
CsaV3_3G027770 Cucumis sativus L. HOM05D006071 ORTHO05D007462 1.3e-164 584.3 786 47.5
vmacro22244 Vaccinium macrocarpon HOM05D006071 ORTHO05D007462 5.0e-164 582.4 683 50.4
CSS0001742 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 1.5e-163 580.9 621 52.7
FAN02G4165 Fragaria x ananassa HOM05D006071 ORTHO05D007462 3.6e-162 576.2 586 54.8
ECA246G2252 Erigeron canadensis HOM05D006071 ORTHO05D007462 1.0e-161 574.7 770 48.1
Sed0023591 Sechium edule HOM05D006071 ORTHO05D007462 4.4e-160 569.3 794 47.7
Nn4g22141 Nelumbo nucifera HOM05D006071 ORTHO05D007462 1.3e-159 567.8 644 51.1
Ah.03g136370 Amaranthus hybridus HOM05D006071 ORTHO05D007462 2.2e-159 567.0 777 46.8
Cc07_g01250 Coffea canephora HOM05D006071 ORTHO05D007462 2.2e-159 567.0 763 48.1
FvH4_6g54271 Fragaria vesca HOM05D006071 ORTHO05D007462 1.8e-158 563.9 667 50.8
HanXRQChr17g0550941 Helianthus annuus HOM05D006071 ORTHO05D007462 9.2e-158 561.6 769 46.2
Eucgr.I01601 Eucalyptus grandis HOM05D006071 ORTHO05D007462 1.6e-157 560.8 777 46.5
MBI07_g41894_MAGBIO Magnolia biondii HOM05D006071 ORTHO05D007462 2.3e-156 557.0 836 45.3
AUR62037834 Chenopodium quinoa HOM05D006071 ORTHO05D007462 2.9e-156 556.6 633 51.3
MSTRG.15572 Avicennia marina HOM05D006071 ORTHO05D007462 8.6e-156 555.1 772 46.4
GSVIVG01032990001 Vitis vinifera HOM05D006071 ORTHO05D007462 8.6e-156 555.1 789 47.1
Sc07g0003750 Simmondsia chinensis HOM05D006071 ORTHO05D007462 1.1e-155 554.7 706 48.3
Sabra14G0109500 Salix brachista HOM05D006071 ORTHO05D007462 9.5e-155 551.6 797 45.3
Peaxi162Scf00420g00836 Petunia axillaris HOM05D006071 ORTHO05D007462 2.1e-154 550.4 642 51.7
Hund04198 Selenicereus undatus HOM05D006071 ORTHO05D007462 2.1e-154 550.4 779 45.6
Nitab4.5_0000519g0320 Nicotiana tabacum HOM05D006071 ORTHO05D007462 2.8e-154 550.1 775 46.3
Lsat_1_v5_gn_0_22580 Lactuca sativa HOM05D006071 ORTHO05D007462 3.0e-153 546.6 775 45.7
Nitab4.5_0002172g0120 Nicotiana tabacum HOM05D006071 ORTHO05D007462 4.4e-152 542.7 776 44.8
Sopen02g039190 Solanum pennellii HOM05D006071 ORTHO05D007462 2.2e-151 540.4 641 50.2
SGA_v2.0_scaffold47G17632 Striga asiatica HOM05D006071 ORTHO05D007462 2.7e-149 533.5 789 44.7
Aqoxy5G03151 Aquilegia oxysepala HOM05D006071 ORTHO05D007462 2.3e-148 530.4 656 49.5
PSO017G0597 Papaver somniferum HOM05D006071 ORTHO05D007462 5.8e-144 515.8 773 44.9
TAR629G1421 Trochodendron aralioides HOM05D006071 ORTHO05D007462 2.2e-143 513.8 775 44.3
PSO478G4855 Papaver somniferum HOM05D006071 ORTHO05D007462 8.3e-143 511.9 796 44.0
Actinidia36244 Actinidia chinensis HOM05D000877 ORTHO05D001509 2.4e-142 510.4 682 45.3
ATR0582G122 Amborella trichopoda HOM05D006071 ORTHO05D007462 2.4e-142 510.4 793 42.5
Oeu003415.3 Olea europaea HOM05D006071 ORTHO05D007462 6.6e-140 502.3 817 42.5
Os02g0516600 Oryza sativa ssp. japonica HOM05D006071 ORTHO05D007462 6.6e-140 502.3 800 42.9
Hma1.2p1_0421F.1_g149975 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 2.5e-139 500.4 485 54.6
CDE05G0431 Ceratophyllum demersum HOM05D000877 ORTHO05D001509 2.0e-136 490.7 778 42.4
Zm00001eb242020 Zea mays HOM05D006071 ORTHO05D007462 1.7e-135 487.6 790 42.0
HPP92_024403 Vanilla planifolia HOM05D006071 ORTHO05D007462 1.2e-130 471.5 629 45.2
Atru.chr6.2689 Acer truncatum HOM05D006071 ORTHO05D007462 2.3e-124 450.7 427 57.6
unitig_0.g2406 Utricularia gibba HOM05D006071 ORTHO05D007462 2.7e-117 427.2 614 43.3
SEGI_23511 Sequoiadendron giganteum HOM05D006071 ORTHO05D007462 1.7e-116 424.5 675 42.2
Psat3g093480 Pisum sativum HOM05D006071 ORTHO05D007462 3.2e-110 403.7 499 50.3
Hma1.2p1_0033F.1_g021090 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 1.2e-109 401.7 515 47.6
COL.COLO4_13369 Corchorus olitorius HOM05D006071 ORTHO05D007462 1.2e-101 375.2 683 41.3
AUR62041072 Chenopodium quinoa HOM05D006071 ORTHO05D007462 3.0e-100 370.5 535 46.5
SMO141G0304 Selaginella moellendorffii HOM05D006071 ORTHO05D007462 1.1e-97 362.1 670 37.9
Mapoly0006s0082 Marchantia polymorpha HOM05D006071 ORTHO05D007462 3.1e-97 360.5 760 34.2
Pp3c20_8910 Physcomitrium patens HOM05D006071 ORTHO05D007462 4.5e-96 356.7 727 36.5
Duzib147G1044 Durio zibethinus HOM05D006071 ORTHO05D007462 1.2e-85 322.0 606 38.8
SHI11389 Sapria himalayana HOM05D006071 ORTHO05D007462 1.1e-83 315.5 412 43.9
CBR_g4363 Chara braunii HOM05D006071 ORTHO05D007462 3.4e-72 277.3 796 30.3
CSS0035612 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 9.7e-67 259.2 445 38.4
Solyc02g094510.4 Solanum lycopersicum HOM05D006071 ORTHO05D007462 1.7e-55 221.9 391 40.4
AagrBONN_evm.TU.Sc2ySwM_344.4297 Anthoceros agrestis HOM05D006071 ORTHO05D007462 7.2e-54 216.5 719 29.2
Psat2g052360 Pisum sativum HOM05D006071 ORTHO05D007462 3.3e-46 191.0 466 34.3
AUR62041071 Chenopodium quinoa HOM05D006071 ORTHO05D007462 1.5e-43 182.2 222 49.1
Psat2g087400 Pisum sativum HOM05D006071 ORTHO05D007462 3.3e-38 164.5 336 40.2
CDE05G1324 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 2.6e-35 154.8 243 42.8
MCO15G395 Micromonas commoda HOM05D006071 ORTHO05D007462 6.4e-34 150.2 553 25.7
Cre03.g144687 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 9.5e-30 136.3 625 24.5
HanXRQChr17g0550971 Helianthus annuus HOM05D006071 ORTHO05D007462 1.4e-25 122.5 209 39.2
HanXRQChr17g0550951 Helianthus annuus HOM05D006071 ORTHO05D007462 5.4e-25 120.6 253 37.2
Psat0s2046g0080 Pisum sativum HOM05D006071 ORTHO05D007462 1.3e-23 115.9 150 48.7
Sc07g0003760 Simmondsia chinensis HOM05D006071 ORTHO05D007462 4.7e-21 107.5 112 50.0
Psat0s2046g0120 Pisum sativum HOM05D006071 ORTHO05D007462 3.1e-20 104.8 93 58.1
Psat2g087520 Pisum sativum HOM05D006071 ORTHO05D007462 1.1e-17 96.3 143 46.2
Atru.chr6.2690 Acer truncatum HOM05D006071 ORTHO05D007462 4.6e-16 90.9 215 38.6
Lj1g0013684 Lotus japonicus HOM05D006071 ORTHO05D007462 6.0e-16 90.5 124 44.4
Cre16.g681251 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 2.1e-13 82.0 178 30.9
Actinidia09844 Actinidia chinensis HOM05D006071 ORTHO05D007462 2.0e-11 75.5 64 65.6
CDE05G2071 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 1.1e-09 69.7 112 47.3
Atru.chr6.2688 Acer truncatum HOM05D006071 ORTHO05D007462 2.4e-09 68.6 101 51.5
ClCG11G018130 Citrullus lanatus HOM05D000463 ORTHO05D001294 2.5e-06 58.5 60 38.3
BcaC04g23967 Brassica carinata HOM05D000463 ORTHO05D001294 9.6e-06 56.6 67 37.3
C09p02880 Brassica napus HOM05D000463 ORTHO05D001294 9.6e-06 56.6 67 37.3
BolC9t53213H Brassica oleracea HOM05D000463 ORTHO05D001294 9.6e-06 56.6 67 37.3
BraA09t35921Z Brassica rapa HOM05D000463 ORTHO05D001294 9.6e-06 56.6 67 37.3
PSO017G5908 Papaver somniferum HOM05D000515 ORTHO05D005511 9.6e-06 56.6 70 40.0


User provided reference genes

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