Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p34100 Brassica napus HOM05D006108 ORTHO05D007605 2.3e-60 235.3 114 100.0
BraA02t08427Z Brassica rapa HOM05D006108 ORTHO05D007605 9.2e-54 213.4 104 99.0
BcaC03g17291 Brassica carinata HOM05D006108 ORTHO05D007605 1.1e-51 206.5 112 92.0
BolC2t11319H Brassica oleracea HOM05D006108 ORTHO05D007605 1.1e-51 206.5 112 92.0
Sp2g15090 Schrenkiella parvula HOM05D006108 ORTHO05D007605 4.4e-48 194.5 114 84.2
C02p52370 Brassica napus HOM05D006108 ORTHO05D007605 1.3e-47 193.0 104 93.3
BcaB07g30252 Brassica carinata HOM05D006108 ORTHO05D007605 1.7e-44 182.6 115 80.9
Thhalv10005176m.g Eutrema salsugineum HOM05D006108 ORTHO05D007605 1.3e-39 166.4 104 78.8
AT3G25855 Arabidopsis thaliana HOM05D006108 ORTHO05D007605 2.9e-39 165.2 114 71.1
BcaC06g31111 Brassica carinata HOM05D006108 ORTHO05D007605 2.9e-39 165.2 116 74.1
AL5G14490 Arabidopsis lyrata HOM05D006108 ORTHO05D007605 1.9e-38 162.5 115 70.4
CARHR146800 Cardamine hirsuta HOM05D006108 ORTHO05D007605 2.1e-37 159.1 114 68.4
A06p42440 Brassica napus HOM05D006108 ORTHO05D007605 5.6e-35 151.0 114 70.2
BraA06t27159Z Brassica rapa HOM05D006108 ORTHO05D007605 5.6e-35 151.0 114 70.2
BcaC06g33947 Brassica carinata HOM05D006108 ORTHO05D007605 2.8e-34 148.7 114 69.3
C07p34870 Brassica napus HOM05D006108 ORTHO05D007605 8.1e-34 147.1 114 68.4
Carub.0005s0368 Capsella rubella HOM05D006108 ORTHO05D007605 8.1e-34 147.1 110 64.5
BolC7t44019H Brassica oleracea HOM05D006108 ORTHO05D007605 1.8e-33 146.0 114 68.4
THA.LOC104824033 Tarenaya hassleriana HOM05D006108 ORTHO05D007605 3.0e-28 128.6 123 56.1
Lsat_1_v5_gn_8_39200 Lactuca sativa HOM05D006108 ORTHO05D007605 1.5e-24 116.3 86 60.5
TWI79G0681 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 9.9e-24 113.6 75 65.3
Manes.14G100500 Manihot esculenta HOM05D006108 ORTHO05D007605 1.3e-23 113.2 75 64.0
MD13G1043700 Malus domestica HOM05D006108 ORTHO05D007605 1.7e-23 112.8 75 62.7
Potri.008G119200 Populus trichocarpa HOM05D006108 ORTHO05D007605 1.7e-23 112.8 83 65.1
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 2.2e-23 112.5 87 56.3
TPR.G38355 Trifolium pratense HOM05D006108 ORTHO05D007605 2.2e-23 112.5 94 58.5
HanXRQChr02g0058721 Helianthus annuus HOM05D006108 ORTHO05D007605 6.4e-23 110.9 96 54.2
Duzib248G0641 Durio zibethinus HOM05D006108 ORTHO05D007605 8.4e-23 110.5 81 58.0
Manes.06G070100 Manihot esculenta HOM05D006108 ORTHO05D007605 1.4e-22 109.8 73 61.6
PGR102G2516 Punica granatum HOM05D006108 ORTHO05D007605 3.2e-22 108.6 87 59.8
Eucgr.B03028 Eucalyptus grandis HOM05D006108 ORTHO05D007605 4.2e-22 108.2 88 56.8
Lj2g0013090 Lotus japonicus HOM05D006108 ORTHO05D007605 4.2e-22 108.2 93 57.0
Medtr5g055190 Medicago truncatula HOM05D006108 ORTHO05D007605 4.2e-22 108.2 74 60.8
TWI31G1391 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 7.1e-22 107.5 72 63.9
Sabra08G0090500 Salix brachista HOM05D006108 ORTHO05D007605 1.2e-21 106.7 77 62.3
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 1.6e-21 106.3 78 59.0
Glyma.01G082600 Glycine max HOM05D006108 ORTHO05D007605 2.1e-21 105.9 80 57.5
DCAR_026728 Daucus carota HOM05D006108 ORTHO05D007605 2.7e-21 105.5 78 60.3
Sed0000256 Sechium edule HOM05D006108 ORTHO05D007605 6.0e-21 104.4 115 46.1
Ciclev10033455m.g Citrus clementina HOM05D006108 ORTHO05D007605 7.8e-21 104.0 66 69.7
Cc11_g10300 Coffea canephora HOM05D006108 ORTHO05D007605 7.8e-21 104.0 78 62.8
Gorai.008G184200 Gossypium raimondii HOM05D006108 ORTHO05D007605 7.8e-21 104.0 76 60.5
Oeu008040.1 Olea europaea HOM05D006108 ORTHO05D007605 7.8e-21 104.0 69 68.1
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 7.8e-21 104.0 73 63.0
Lalb_Chr10g0099931 Lupinus albus HOM05D006108 ORTHO05D007605 1.0e-20 103.6 106 50.9
CSS0049683 Camellia sinensis var. sinensis HOM05D006108 ORTHO05D007605 1.3e-20 103.2 78 59.0
Gohir.A09G177600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.7e-20 102.8 89 56.2
Phvul.003G034700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 1.7e-20 102.8 80 55.0
Gohir.D09G173100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 2.3e-20 102.4 89 56.2
Gorai.006G195000 Gossypium raimondii HOM05D006108 ORTHO05D007605 2.3e-20 102.4 89 56.2
Psat2g097920 Pisum sativum HOM05D006108 ORTHO05D007605 2.3e-20 102.4 71 60.6
Prupe.1G308800 Prunus persica HOM05D006108 ORTHO05D007605 2.3e-20 102.4 72 62.5
Gohir.A09G047400 Gossypium hirsutum HOM05D006108 ORTHO05D007605 3.0e-20 102.1 84 56.0
Gorai.006G061500 Gossypium raimondii HOM05D006108 ORTHO05D007605 3.0e-20 102.1 84 56.0
Migut.L01077 Erythranthe guttata HOM05D006108 ORTHO05D007605 5.1e-20 101.3 72 61.1
Oeu041896.1 Olea europaea HOM05D006108 ORTHO05D007605 5.1e-20 101.3 69 66.7
PSO017G5628 Papaver somniferum HOM05D006108 ORTHO05D007605 5.1e-20 101.3 92 50.0
FAN07G1587 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.1e-19 100.1 69 63.8
Gohir.D09G048600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.1e-19 100.1 81 56.8
Dinv09807 Davidia involucrata HOM05D006108 ORTHO05D007605 2.5e-19 99.0 81 58.0
MD16G1044500 Malus domestica HOM05D006108 ORTHO05D007605 2.5e-19 99.0 72 59.7
Thecc.03G033400 Theobroma cacao HOM05D006108 ORTHO05D007605 4.3e-19 98.2 78 56.4
Actinidia35084 Actinidia chinensis HOM05D006108 ORTHO05D007605 5.6e-19 97.8 76 60.5
CsaV3_6G003400 Cucumis sativus L. HOM05D006108 ORTHO05D007605 5.6e-19 97.8 77 57.1
FAN22G0059 Fragaria x ananassa HOM05D006108 ORTHO05D007605 7.3e-19 97.4 69 62.3
Lj2g0017619 Lotus japonicus HOM05D006108 ORTHO05D007605 7.3e-19 97.4 106 47.2
Psat6g222560 Pisum sativum HOM05D006108 ORTHO05D007605 7.3e-19 97.4 90 53.3
Atru.chr9.818 Acer truncatum HOM05D006108 ORTHO05D007605 9.6e-19 97.1 73 60.3
QL01p043861 Quercus lobata HOM05D006108 ORTHO05D007605 1.6e-18 96.3 66 60.6
CiPaw.15G083500 Carya illinoinensis HOM05D006108 ORTHO05D007605 2.8e-18 95.5 76 55.3
Gohir.A12G168100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 3.6e-18 95.1 71 59.2
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 3.6e-18 95.1 75 57.3
FAN13G1808 Fragaria x ananassa HOM05D006108 ORTHO05D007605 6.2e-18 94.4 73 57.5
FAN18G0723 Fragaria x ananassa HOM05D006108 ORTHO05D007605 6.2e-18 94.4 73 57.5
FAN18G1336 Fragaria x ananassa HOM05D006108 ORTHO05D007605 6.2e-18 94.4 73 57.5
RcHm_v2.0_Chr7g0185241 Rosa chinensis HOM05D006108 ORTHO05D007605 6.2e-18 94.4 73 57.5
TPR.G35239 Trifolium pratense HOM05D006108 ORTHO05D007605 6.2e-18 94.4 71 59.2
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 6.2e-18 94.4 85 48.2
FvH4_5g12320 Fragaria vesca HOM05D006108 ORTHO05D007605 8.1e-18 94.0 73 57.5
Sopen03g038460 Solanum pennellii HOM05D006108 ORTHO05D007605 1.1e-17 93.6 84 53.6
Duzib084G1067 Durio zibethinus HOM05D006108 ORTHO05D007605 1.4e-17 93.2 89 52.8
Sc14g0007540 Simmondsia chinensis HOM05D006108 ORTHO05D007605 1.4e-17 93.2 72 58.3
Glyma.09G185400 Glycine max HOM05D006108 ORTHO05D007605 1.8e-17 92.8 80 50.0
Gohir.D12G171700 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.8e-17 92.8 71 59.2
Manes.05G140027 Manihot esculenta HOM05D006108 ORTHO05D007605 1.8e-17 92.8 70 58.6
PGSC0003DMG402005714 Solanum tuberosum HOM05D006108 ORTHO05D007605 1.8e-17 92.8 83 54.2
MD14G1225800 Malus domestica HOM05D006108 ORTHO05D007605 2.4e-17 92.4 107 45.8
Cfa019791 Carpinus fangiana HOM05D006108 ORTHO05D007605 3.1e-17 92.0 90 48.9
CDE05G0497 Ceratophyllum demersum HOM05D006108 ORTHO05D007605 3.1e-17 92.0 77 55.8
Ciclev10022919m.g Citrus clementina HOM05D006108 ORTHO05D007605 4.0e-17 91.7 85 52.9
FAN08G0393 Fragaria x ananassa HOM05D006108 ORTHO05D007605 4.0e-17 91.7 73 56.2
Glyma.07G090500 Glycine max HOM05D006108 ORTHO05D007605 4.0e-17 91.7 80 51.2
Eucgr.B00718 Eucalyptus grandis HOM05D006108 ORTHO05D007605 5.3e-17 91.3 93 49.5
MD06G1214900 Malus domestica HOM05D006108 ORTHO05D007605 5.3e-17 91.3 92 45.7
Nn3g17803 Nelumbo nucifera HOM05D006108 ORTHO05D007605 5.3e-17 91.3 89 51.7
FAN12G0874 Fragaria x ananassa HOM05D006108 ORTHO05D007605 9.0e-17 90.5 76 56.6
Nitab4.5_0003285g0040 Nicotiana tabacum HOM05D006108 ORTHO05D007605 9.0e-17 90.5 92 50.0
Prupe.5G220300 Prunus persica HOM05D006108 ORTHO05D007605 9.0e-17 90.5 90 48.9
Rhsim12G0143800 Rhododendron simsii HOM05D006108 ORTHO05D007605 9.0e-17 90.5 85 50.6
Nn4g23806 Nelumbo nucifera HOM05D006108 ORTHO05D007605 2.6e-16 89.0 71 53.5
CsaV3_1G006560 Cucumis sativus L. HOM05D006108 ORTHO05D007605 3.4e-16 88.6 66 59.1
Nitab4.5_0001599g0060 Nicotiana tabacum HOM05D006108 ORTHO05D007605 4.5e-16 88.2 83 53.0
Nitab4.5_0004412g0100 Nicotiana tabacum HOM05D006108 ORTHO05D007605 4.5e-16 88.2 83 53.0
Phvul.004G158700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 5.8e-16 87.8 80 50.0
QL10p025064 Quercus lobata HOM05D006108 ORTHO05D007605 7.6e-16 87.4 85 50.6
CAN.G388.38 Capsicum annuum HOM05D006108 ORTHO05D007605 9.9e-16 87.0 86 45.3
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 9.9e-16 87.0 104 41.3
Nitab4.5_0001914g0010 Nicotiana tabacum HOM05D006108 ORTHO05D007605 2.2e-15 85.9 66 54.5
CiPaw.15G129300 Carya illinoinensis HOM05D006108 ORTHO05D007605 3.8e-15 85.1 75 54.7
Sopen05g012490 Solanum pennellii HOM05D006108 ORTHO05D007605 2.4e-14 82.4 68 52.9
arahy.Tifrunner.gnm1.ann1.1V8BDZ Arachis hypogaea HOM05D006108 ORTHO05D007605 3.2e-14 82.0 71 52.1
arahy.Tifrunner.gnm1.ann1.L19XPP Arachis hypogaea HOM05D006108 ORTHO05D007605 3.2e-14 82.0 71 52.1
Sed0021850 Sechium edule HOM05D006108 ORTHO05D007605 3.2e-14 82.0 102 44.1
Cpa.g.sc1.185 Carica papaya HOM05D006108 ORTHO05D007605 2.1e-13 79.3 66 54.5
HPP92_026959 Vanilla planifolia HOM05D006108 ORTHO05D007605 4.6e-13 78.2 77 46.8
ECA233G5877 Erigeron canadensis HOM05D006108 ORTHO05D007605 6.0e-13 77.8 58 55.2
Os09g0408550 Oryza sativa ssp. japonica HOM05D006108 ORTHO05D007605 2.3e-12 75.9 64 48.4
Zm00001eb099300 Zea mays HOM05D006108 ORTHO05D007605 5.1e-12 74.7 73 42.5
arahy.Tifrunner.gnm1.ann1.384K0G Arachis hypogaea HOM05D006108 ORTHO05D007605 4.8e-10 68.2 61 52.5
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 8.1e-10 67.4 65 49.2
Hund05757 Selenicereus undatus HOM05D006108 ORTHO05D007605 1.8e-09 66.2 67 46.3
Sed0027931 Sechium edule HOM05D006108 ORTHO05D007605 3.1e-09 65.5 74 45.9
Peaxi162Scf00015g00844 Petunia axillaris HOM05D006108 ORTHO05D007605 4.0e-09 65.1 56 55.4
ClCG04G011190 Citrullus lanatus HOM05D006108 ORTHO05D007605 5.8e-08 61.2 43 62.8
ClCG08G005220 Citrullus lanatus HOM05D006108 ORTHO05D007605 7.6e-08 60.8 90 36.7
CAN.G438.131 Capsicum annuum HOM05D006108 ORTHO05D007605 1.7e-07 59.7 46 58.7
Zm00001eb078160 Zea mays HOM05D000262 ORTHO05D009865 3.8e-07 58.5 91 35.2
SEGI_37086 Sequoiadendron giganteum HOM05D000262 ORTHO05D000300 8.4e-07 57.4 80 32.5


User provided reference genes

Program Settings