Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p33990 Brassica napus HOM05D001206 ORTHO05D016673 5.3e-96 354.4 182 100.0
A09p24920 Brassica napus HOM05D001206 ORTHO05D005935 2.8e-52 209.1 304 47.4
BraA09t38080Z Brassica rapa HOM05D001206 ORTHO05D005935 8.0e-52 207.6 304 47.0
BcaB07g30635 Brassica carinata HOM05D001206 ORTHO05D005935 1.0e-51 207.2 304 47.4
Aa31LG2G6650 Aethionema arabicum HOM05D001206 ORTHO05D005935 2.3e-51 206.1 304 46.7
C09p31950 Brassica napus HOM05D001206 ORTHO05D005935 2.3e-51 206.1 304 46.7
BolC9t56049H Brassica oleracea HOM05D001206 ORTHO05D005935 2.3e-51 206.1 304 46.7
BcaC04g21423 Brassica carinata HOM05D001206 ORTHO05D005935 3.1e-51 205.7 304 46.4
Sp2g14920 Schrenkiella parvula HOM05D001206 ORTHO05D005935 5.2e-51 204.9 304 47.0
Thhalv10012940m.g Eutrema salsugineum HOM05D001206 ORTHO05D005935 6.8e-51 204.5 304 46.7
AT3G25660 Arabidopsis thaliana HOM05D001206 ORTHO05D005935 8.9e-51 204.1 304 46.7
BcaC03g17284 Brassica carinata HOM05D001206 ORTHO05D016673 8.9e-51 204.1 167 71.3
Carub.0005s0348 Capsella rubella HOM05D001206 ORTHO05D005935 8.9e-51 204.1 304 46.7
AL5G14200 Arabidopsis lyrata HOM05D001206 ORTHO05D005935 2.0e-50 203.0 304 46.7
CARHR260190 Cardamine hirsuta HOM05D001206 ORTHO05D005935 9.8e-50 200.7 304 45.7
CARHR288520 Cardamine hirsuta HOM05D001206 ORTHO05D005935 2.9e-49 199.1 305 45.9
C02p52310 Brassica napus HOM05D001206 ORTHO05D016673 6.4e-49 198.0 116 90.5
THA.LOC104824040 Tarenaya hassleriana HOM05D001206 ORTHO05D005935 2.0e-47 193.0 304 44.4
Haze_13462 Corylus avellana HOM05D001206 ORTHO05D005935 1.7e-46 189.9 277 45.5
THA.LOC104805240 Tarenaya hassleriana HOM05D001206 ORTHO05D005935 5.0e-46 188.3 304 43.8
Gohir.A06G169500 Gossypium hirsutum HOM05D001206 ORTHO05D005935 2.5e-45 186.0 304 42.4
Gohir.D06G177200 Gossypium hirsutum HOM05D001206 ORTHO05D005935 2.5e-45 186.0 304 42.4
Gorai.N008100 Gossypium raimondii HOM05D001206 ORTHO05D005935 2.5e-45 186.0 304 42.4
CiPaw.03G196100 Carya illinoinensis HOM05D001206 ORTHO05D005935 7.3e-45 184.5 304 42.4
QL08p043357 Quercus lobata HOM05D001206 ORTHO05D005935 9.5e-45 184.1 300 42.7
TWI38G0487 Tripterygium wilfordii HOM05D001206 ORTHO05D005935 2.8e-44 182.6 304 42.8
Cpa.g.sc139.29 Carica papaya HOM05D001206 ORTHO05D005935 3.6e-44 182.2 304 42.4
Manes.01G129100 Manihot esculenta HOM05D001206 ORTHO05D005935 1.1e-43 180.6 304 41.8
GSVIVG01020788001 Vitis vinifera HOM05D001206 ORTHO05D005935 1.1e-43 180.6 304 41.4
Medtr3g048950 Medicago truncatula HOM05D001206 ORTHO05D005935 1.4e-43 180.3 304 42.4
Rhsim06G0124000 Rhododendron simsii HOM05D001206 ORTHO05D005935 1.4e-43 180.3 304 41.4
Solyc10g007840.3 Solanum lycopersicum HOM05D001206 ORTHO05D005935 1.4e-43 180.3 304 41.8
Sopen10g003740 Solanum pennellii HOM05D001206 ORTHO05D005935 1.4e-43 180.3 304 41.8
arahy.Tifrunner.gnm1.ann1.DXFN4R Arachis hypogaea HOM05D001206 ORTHO05D005935 1.8e-43 179.9 304 41.8
Ca_14632_v3 Cicer arietinum L. HOM05D001206 ORTHO05D005935 1.8e-43 179.9 305 41.6
MELO3C014457.2 Cucumis melo HOM05D001206 ORTHO05D005935 1.8e-43 179.9 300 41.7
Peaxi162Scf00035g03126 Petunia axillaris HOM05D001206 ORTHO05D005935 2.3e-43 179.5 304 41.4
Potri.018G086350 Populus trichocarpa HOM05D001206 ORTHO05D005935 3.1e-43 179.1 304 41.4
Prupe.3G169900 Prunus persica HOM05D001206 ORTHO05D005935 3.1e-43 179.1 304 41.4
Actinidia12826 Actinidia chinensis HOM05D001206 ORTHO05D005935 4.0e-43 178.7 304 41.8
EL10Ac9g21024 Beta vulgaris HOM05D001206 ORTHO05D005935 4.0e-43 178.7 304 42.1
arahy.Tifrunner.gnm1.ann1.BZT8G9 Arachis hypogaea HOM05D001206 ORTHO05D005935 5.2e-43 178.3 311 41.2
MD17G1143200 Malus domestica HOM05D001206 ORTHO05D005935 5.2e-43 178.3 304 41.8
Thecc.10G113900 Theobroma cacao HOM05D001206 ORTHO05D005935 5.2e-43 178.3 304 41.1
Hma1.2p1_0178F.1_g078230 Hydrangea macrophylla HOM05D001206 ORTHO05D005935 6.8e-43 177.9 300 42.0
Hma1.2p1_3358F.1_g335550 Hydrangea macrophylla HOM05D001206 ORTHO05D005935 6.8e-43 177.9 300 42.0
MBI05_g35447_MAGBIO Magnolia biondii HOM05D001206 ORTHO05D005935 6.8e-43 177.9 300 42.0
Sabra18G0074600 Salix brachista HOM05D003301 ORTHO05D003665 6.8e-43 177.9 304 41.1
Hund07738 Selenicereus undatus HOM05D001206 ORTHO05D005935 6.8e-43 177.9 304 42.1
TAR629G1684 Trochodendron aralioides HOM05D001206 ORTHO05D005935 6.8e-43 177.9 304 41.1
Psat5g186880 Pisum sativum HOM05D001206 ORTHO05D005935 1.2e-42 177.2 304 41.8
DCAR_013291 Daucus carota HOM05D001206 ORTHO05D005935 1.5e-42 176.8 304 40.5
ClCG09G022260 Citrullus lanatus HOM05D001206 ORTHO05D005935 2.0e-42 176.4 300 41.3
Dinv06275 Davidia involucrata HOM05D001206 ORTHO05D005935 2.0e-42 176.4 304 42.1
MD09G1156700 Malus domestica HOM05D001206 ORTHO05D005935 2.0e-42 176.4 304 42.1
Ah.01g016080 Amaranthus hybridus HOM05D001206 ORTHO05D005935 2.6e-42 176.0 302 41.4
CANSAT64G1074 Cannabis sativa HOM05D001206 ORTHO05D005935 2.6e-42 176.0 304 40.8
FAN02G0831 Fragaria x ananassa HOM05D001206 ORTHO05D005935 2.6e-42 176.0 304 42.1
Sed0006625 Sechium edule HOM05D001206 ORTHO05D005935 2.6e-42 176.0 300 41.3
AUR62032754 Chenopodium quinoa HOM05D001206 ORTHO05D005935 4.4e-42 175.3 304 41.8
Ciclev10014821m.g Citrus clementina HOM05D001206 ORTHO05D005935 4.4e-42 175.3 304 40.8
Lalb_Chr15g0080441 Lupinus albus HOM05D001206 ORTHO05D005935 4.4e-42 175.3 304 41.1
AUR62004905 Chenopodium quinoa HOM05D001206 ORTHO05D005935 7.5e-42 174.5 304 42.1
FvH4_6g37630 Fragaria vesca HOM05D001206 ORTHO05D005935 7.5e-42 174.5 304 41.8
FAN14G2675 Fragaria x ananassa HOM05D001206 ORTHO05D005935 7.5e-42 174.5 304 41.8
RcHm_v2.0_Chr2g0150631 Rosa chinensis HOM05D001206 ORTHO05D005935 7.5e-42 174.5 304 41.8
Aqoxy3G00674 Aquilegia oxysepala HOM05D001206 ORTHO05D005935 9.8e-42 174.1 304 39.5
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 9.8e-42 174.1 300 40.7
Eucgr.K01190 Eucalyptus grandis HOM05D001206 ORTHO05D005935 9.8e-42 174.1 304 40.1
Atru.chr6.3565 Acer truncatum HOM05D001206 ORTHO05D005935 1.3e-41 173.7 304 40.8
Nn6g34432 Nelumbo nucifera HOM05D001206 ORTHO05D005935 1.3e-41 173.7 304 40.8
PGR142G3322 Punica granatum HOM05D001206 ORTHO05D005935 1.3e-41 173.7 304 40.5
Lj6g0018418 Lotus japonicus HOM05D001206 ORTHO05D005935 2.2e-41 172.9 304 40.8
CSS0014076 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D005935 2.9e-41 172.6 304 40.8
CSS0050390 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D005935 2.9e-41 172.6 304 40.8
Phvul.006G036200 Phaseolus vulgaris HOM05D001206 ORTHO05D005935 4.9e-41 171.8 304 40.8
CAN.G1191.9 Capsicum annuum HOM05D001206 ORTHO05D005935 6.4e-41 171.4 298 41.3
Glyma.08G311400 Glycine max HOM05D001206 ORTHO05D005935 8.3e-41 171.0 304 41.1
SalBow7G4591 Salvia bowleyana HOM05D001206 ORTHO05D005935 1.4e-40 170.2 304 40.5
MSTRG.12835 Avicennia marina HOM05D001206 ORTHO05D005935 1.9e-40 169.9 304 40.1
ECA233G3159 Erigeron canadensis HOM05D001206 ORTHO05D005935 1.9e-40 169.9 304 40.8
Migut.H02113 Erythranthe guttata HOM05D001206 ORTHO05D005935 1.9e-40 169.9 304 41.1
PSO478G1473 Papaver somniferum HOM05D001206 ORTHO05D005935 3.2e-40 169.1 304 39.8
SGA_v2.0_scaffold4G02113 Striga asiatica HOM05D001206 ORTHO05D005935 3.2e-40 169.1 304 39.8
Glyma.18G104200 Glycine max HOM05D001206 ORTHO05D005935 7.1e-40 167.9 304 40.8
HanXRQChr13g0387351 Helianthus annuus HOM05D001206 ORTHO05D005935 9.2e-40 167.5 304 40.5
PSO017G2524 Papaver somniferum HOM05D001206 ORTHO05D005935 9.2e-40 167.5 304 39.5
Lsat_1_v5_gn_8_31840 Lactuca sativa HOM05D001206 ORTHO05D005935 3.5e-39 165.6 304 38.5
Sc21g0004390 Simmondsia chinensis HOM05D001206 ORTHO05D005935 7.8e-39 164.5 308 40.3
vmacro12422 Vaccinium macrocarpon HOM05D001206 ORTHO05D005935 7.8e-39 164.5 339 38.1
ATR1096G083 Amborella trichopoda HOM05D001206 ORTHO05D005935 7.3e-37 157.9 300 36.0
PGSC0003DMG401021239 Solanum tuberosum HOM05D001206 ORTHO05D005935 7.3e-37 157.9 217 47.0
Os04g0643200 Oryza sativa ssp. japonica HOM05D001206 ORTHO05D005935 1.2e-36 157.1 300 37.7
vmacro12423 Vaccinium macrocarpon HOM05D001206 ORTHO05D005935 1.6e-36 156.8 359 35.7
CDE05G3011 Ceratophyllum demersum HOM05D001206 ORTHO05D005935 3.6e-36 155.6 300 37.0
Nitab4.5_0002027g0090 Nicotiana tabacum HOM05D001206 ORTHO05D005935 1.5e-34 150.2 301 38.2
AagrBONN_evm.TU.Sc2ySwM_368.1898 Anthoceros agrestis HOM05D001206 ORTHO05D005935 5.4e-32 141.7 300 34.3
Pp3c27_1950 Physcomitrium patens HOM05D001206 ORTHO05D005935 5.4e-32 141.7 300 34.3
Pp3c16_16670 Physcomitrium patens HOM05D001206 ORTHO05D005935 7.1e-32 141.4 300 34.3
Zm00001eb068770 Zea mays HOM05D001206 ORTHO05D005935 4.6e-31 138.7 218 42.7
SMO118G0181 Selaginella moellendorffii HOM05D001206 ORTHO05D005935 7.8e-31 137.9 300 33.7
SEGI_06909 Sequoiadendron giganteum HOM05D001206 ORTHO05D005935 7.8e-31 137.9 300 35.3
TPR.G13547 Trifolium pratense HOM05D001206 ORTHO05D005935 7.8e-31 137.9 282 37.6
Cc05_g09120 Coffea canephora HOM05D001206 ORTHO05D005935 1.0e-30 137.5 293 35.2
Mapoly0029s0077 Marchantia polymorpha HOM05D001206 ORTHO05D005935 1.0e-30 137.5 300 33.7
VMungo0540G0597 Vigna mungo HOM05D001206 ORTHO05D005935 1.7e-30 136.7 282 37.6
unitig_22.g6850 Utricularia gibba HOM05D001206 ORTHO05D005935 3.3e-29 132.5 304 35.2
Cre10.g439400 Chlamydomonas reinhardtii HOM05D001206 ORTHO05D005935 2.4e-24 116.3 301 32.2
Oeu032122.1 Olea europaea HOM05D001206 ORTHO05D005935 3.2e-24 115.9 181 42.5
CBR_g12438 Chara braunii HOM05D001206 ORTHO05D005935 1.6e-23 113.6 234 35.9
HPP92_002388 Vanilla planifolia HOM05D001206 ORTHO05D005935 6.0e-23 111.7 211 37.4
BraA02t08421Z Brassica rapa HOM05D001206 ORTHO05D016673 1.3e-20 104.0 57 89.5
HPP92_002350 Vanilla planifolia HOM05D001206 ORTHO05D005935 1.3e-20 104.0 211 37.0
PRCOL_00000262 Prasinoderma coloniale HOM05D001206 ORTHO05D005935 1.2e-18 97.4 297 28.6
MCO01G356 Micromonas commoda HOM05D001206 ORTHO05D005935 1.5e-18 97.1 219 32.9
Lj1A587G24 Lonicera japonica HOM05D001206 ORTHO05D005935 5.8e-18 95.1 136 44.9
Pp3s32_288 Physcomitrium patens HOM05D001206 ORTHO05D005935 2.4e-16 89.7 217 32.7
TPR.G20838 Trifolium pratense HOM05D001206 ORTHO05D005935 1.2e-15 87.4 137 42.3
Nitab4.5_0001402g0110 Nicotiana tabacum HOM05D001206 ORTHO05D005935 9.6e-13 77.8 160 41.9
Haze_27080 Corylus avellana HOM05D001206 ORTHO05D005935 1.3e-12 77.4 299 26.8
FAN26G0979 Fragaria x ananassa HOM05D001206 ORTHO05D016673 1.3e-12 77.4 58 65.5
BraA02t08420Z Brassica rapa HOM05D001206 ORTHO05D108800 2.1e-12 76.6 38 100.0
BcaB07g30259 Brassica carinata HOM05D001206 ORTHO05D005935 2.8e-12 76.3 126 45.2
Actinidia11180 Actinidia chinensis HOM05D001206 ORTHO05D005935 6.9e-11 71.6 141 42.6
TPR.G14752 Trifolium pratense HOM05D001206 ORTHO05D005935 2.6e-10 69.7 113 42.5
Lsat_1_v5_gn_5_180321 Lactuca sativa HOM05D001206 ORTHO05D005935 7.6e-10 68.2 80 51.2
MBI18_g28046_MAGBIO Magnolia biondii HOM05D001206 ORTHO05D005935 9.9e-10 67.8 114 41.2
arahy.Tifrunner.gnm1.ann1.3FS28A Arachis hypogaea HOM05D001206 ORTHO05D016673 5.5e-08 62.0 42 69.0
MBI16_g16199_MAGBIO Magnolia biondii HOM05D001206 ORTHO05D005935 7.1e-08 61.6 51 66.7
Gorai.010G208200 Gossypium raimondii HOM05D001206 ORTHO05D005935 4.6e-07 58.9 52 59.6
FAN10G2392 Fragaria x ananassa HOM05D001206 ORTHO05D016673 6.0e-07 58.5 47 61.7
FAN11G2548 Fragaria x ananassa HOM05D001206 ORTHO05D016673 2.3e-06 56.6 143 35.0
Gorai.N005800 Gossypium raimondii HOM05D001206 ORTHO05D005935 3.0e-06 56.2 31 87.1
Nitab4.5_0001402g0160 Nicotiana tabacum HOM05D001206 ORTHO05D005935 3.9e-06 55.8 52 53.8
PGSC0003DMG402021239 Solanum tuberosum HOM05D001206 ORTHO05D005935 3.9e-06 55.8 52 55.8


User provided reference genes

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