Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 1.2e-183 646.7 413 100.0
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 2.6e-151 539.3 360 98.6
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 4.0e-139 498.8 362 89.2
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 2.9e-134 482.6 350 89.1
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 3.5e-119 432.6 350 83.7
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 8.9e-107 391.3 381 69.3
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 1.1e-99 367.9 407 71.7
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 2.9e-97 359.8 364 76.9
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 7.1e-96 355.1 364 76.4
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 1.7e-94 350.5 381 71.1
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 2.3e-94 350.1 388 70.1
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 5.1e-94 349.0 388 69.8
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 1.2e-92 344.4 390 70.3
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 1.1e-91 341.3 397 64.0
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 1.1e-91 341.3 364 73.1
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 1.2e-90 337.8 364 63.7
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 3.4e-90 336.3 397 65.2
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 4.4e-90 335.9 386 69.4
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 4.6e-87 325.9 370 73.8
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 4.5e-82 309.3 387 67.7
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 8.4e-81 305.1 397 57.7
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 1.6e-79 300.8 396 67.2
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 9.6e-77 291.6 377 52.8
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 5.8e-74 282.3 447 58.8
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 1.8e-62 244.2 214 68.2
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 5.1e-62 242.7 437 59.0
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 3.7e-60 236.5 428 57.7
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 3.0e-38 163.7 419 35.3
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 3.0e-38 163.7 419 35.3
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 3.7e-36 156.8 356 43.3
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 1.0e-33 148.7 416 37.7
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 8.5e-33 145.6 349 36.7
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 8.5e-33 145.6 419 38.9
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 5.5e-32 142.9 422 38.2
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 5.5e-32 142.9 411 41.8
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 9.4e-32 142.1 347 36.9
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 9.4e-32 142.1 410 32.7
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 1.2e-31 141.7 417 34.1
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 1.0e-30 138.7 356 39.3
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 1.4e-30 138.3 393 38.2
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 2.3e-30 137.5 416 38.7
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 5.2e-30 136.3 402 38.3
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 6.7e-30 136.0 412 42.0
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 8.8e-30 135.6 371 39.4
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.5e-29 134.8 401 38.4
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 2.6e-29 134.0 351 44.4
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 1.3e-28 131.7 339 40.4
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 1.7e-28 131.3 428 41.4
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 3.1e-27 127.1 347 37.8
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 9.1e-27 125.6 400 42.2
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 1.2e-26 125.2 358 36.0
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 4.5e-26 123.2 341 40.2
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 1.3e-25 121.7 417 33.3
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 2.2e-25 120.9 362 35.4
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 2.2e-25 120.9 246 44.7
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.2e-25 120.9 246 44.7
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.2e-25 120.9 246 44.7
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 2.9e-25 120.6 373 39.4
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 6.5e-25 119.4 402 40.5
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 3.2e-24 117.1 419 38.2
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 3.2e-24 117.1 392 34.4
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 5.5e-24 116.3 243 40.3
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 7.2e-24 115.9 399 33.8
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 1.2e-23 115.2 410 38.5
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.7e-23 114.0 399 42.9
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 2.7e-23 114.0 350 31.1
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 3.6e-23 113.6 238 37.4
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 6.1e-23 112.8 253 44.3
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 1.0e-22 112.1 388 34.3
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 1.0e-22 112.1 224 39.3
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 1.0e-22 112.1 224 39.3
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 3.0e-22 110.5 229 42.8
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 3.0e-22 110.5 417 40.8
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 4.0e-22 110.2 230 37.4
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 4.0e-22 110.2 230 37.4
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 4.0e-22 110.2 234 38.5
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 5.2e-22 109.8 388 32.5
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 5.2e-22 109.8 388 32.5
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 5.2e-22 109.8 229 43.2
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 6.8e-22 109.4 234 38.5
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 6.8e-22 109.4 431 33.2
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 6.8e-22 109.4 229 42.8
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.2e-21 108.6 434 32.9
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 1.2e-21 108.6 439 33.7
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 1.5e-21 108.2 416 35.1
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 3.4e-21 107.1 240 44.2
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 3.4e-21 107.1 233 47.6
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 4.4e-21 106.7 252 43.7
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 5.7e-21 106.3 419 39.9
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 9.8e-21 105.5 430 30.7
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 2.8e-20 104.0 407 38.3
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 3.7e-20 103.6 232 45.7
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 8.3e-20 102.4 388 34.3
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 1.1e-19 102.1 366 32.5
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 4.1e-19 100.1 335 32.2
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 4.1e-19 100.1 399 34.3
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 7.0e-19 99.4 225 40.0
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 1.2e-18 98.6 418 33.0
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 1.2e-18 98.6 254 42.1
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 1.2e-18 98.6 254 42.1
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 2.7e-18 97.4 228 34.6
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 3.5e-18 97.1 357 33.3
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 3.5e-18 97.1 248 36.7
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 3.5e-18 97.1 241 35.3
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 4.5e-18 96.7 246 37.0
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 5.9e-18 96.3 211 35.1
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 5.9e-18 96.3 211 35.1
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 1.3e-17 95.1 222 36.9
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 2.9e-17 94.0 234 36.3
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 2.9e-17 94.0 234 36.3
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 1.1e-16 92.0 211 35.1
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 1.9e-16 91.3 245 39.6
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 4.2e-16 90.1 164 48.8
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 7.2e-16 89.4 242 40.9
BcaC04g21425 Brassica carinata HOM05D004568 ORTHO05D005343 6.1e-15 86.3 211 37.4
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 8.0e-15 85.9 264 33.3
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 1.8e-14 84.7 245 33.9
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 4.0e-14 83.6 416 28.8
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 6.8e-14 82.8 423 35.9
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 1.2e-13 82.0 237 39.7
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 1.5e-13 81.6 206 32.5
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 1.5e-13 81.6 248 33.5
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 2.6e-13 80.9 256 32.4
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 7.5e-13 79.3 202 33.7
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 1.3e-12 78.6 405 25.7
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 2.2e-12 77.8 230 35.7
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 2.2e-12 77.8 230 35.7
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 1.1e-11 75.5 264 31.8
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 1.8e-11 74.7 395 27.3
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 1.8e-11 74.7 207 33.3
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 3.1e-11 73.9 239 40.6
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 4.1e-11 73.6 239 40.6
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 7.0e-11 72.8 237 40.1
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 1.0e-09 68.9 251 39.0
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 1.3e-09 68.6 119 37.8
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 2.3e-09 67.8 251 31.9
unitig_26.g10277 Utricularia gibba HOM05D004568 ORTHO05D005343 2.3e-09 67.8 175 29.1
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 1.9e-08 64.7 252 29.4
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 1.9e-08 64.7 321 27.7
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 1.6e-07 61.6 197 32.5
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 2.8e-07 60.8 274 28.8


User provided reference genes

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