Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p33840 Brassica napus HOM05D006853 ORTHO05D008906 1.2e-131 473.4 270 100.0
BraA02t08402Z Brassica rapa HOM05D006853 ORTHO05D008906 9.2e-129 463.8 270 98.1
BcaB07g30269 Brassica carinata HOM05D006853 ORTHO05D008906 9.0e-116 420.6 270 81.9
C02p52120 Brassica napus HOM05D006853 ORTHO05D008906 1.1e-113 413.7 273 81.3
BolC2t11296H Brassica oleracea HOM05D006853 ORTHO05D008906 1.1e-113 413.7 273 81.3
BcaC03g17267 Brassica carinata HOM05D006853 ORTHO05D008906 1.9e-113 412.9 271 81.9
BcaC03g17268 Brassica carinata HOM05D006853 ORTHO05D008906 1.9e-113 412.9 271 81.9
Thhalv10004778m.g Eutrema salsugineum HOM05D006853 ORTHO05D008906 7.3e-110 401.0 270 77.4
Sp2g14810 Schrenkiella parvula HOM05D006853 ORTHO05D008906 3.1e-108 395.6 270 76.3
AT3G25545 Arabidopsis thaliana HOM05D006853 ORTHO05D008906 3.5e-104 382.1 271 74.2
Carub.0005s0328 Capsella rubella HOM05D006853 ORTHO05D008906 4.6e-104 381.7 270 73.0
AL5G14010 Arabidopsis lyrata HOM05D006853 ORTHO05D008906 6.0e-104 381.3 271 73.4
BcaB07g30639 Brassica carinata HOM05D006853 ORTHO05D008906 1.1e-100 370.5 271 74.2
Aa31LG2G6790 Aethionema arabicum HOM05D006853 ORTHO05D008906 2.2e-98 362.8 276 69.6
CARHR146460 Cardamine hirsuta HOM05D006853 ORTHO05D008906 1.0e-95 354.0 272 69.5
THA.LOC104801842 Tarenaya hassleriana HOM05D006853 ORTHO05D008906 1.9e-86 323.2 275 63.6
BcaC04g21430 Brassica carinata HOM05D006853 ORTHO05D008906 3.1e-76 289.3 194 77.8
C09p31840 Brassica napus HOM05D006853 ORTHO05D008906 9.1e-76 287.7 194 77.3
Atru.chr11.1459 Acer truncatum HOM05D006853 ORTHO05D008906 1.1e-73 280.8 271 56.5
Atru.chr11.1493 Acer truncatum HOM05D006853 ORTHO05D008906 1.1e-73 280.8 271 56.5
Nitab4.5_0000027g0460 Nicotiana tabacum HOM05D006853 ORTHO05D008906 4.2e-73 278.9 277 56.0
CSS0003455 Camellia sinensis var. sinensis HOM05D006853 ORTHO05D008906 2.7e-72 276.2 271 55.7
Nitab4.5_0010998g0020 Nicotiana tabacum HOM05D006853 ORTHO05D008906 2.7e-72 276.2 277 56.0
COL.COLO4_27747 Corchorus olitorius HOM05D006853 ORTHO05D008906 4.7e-72 275.4 277 55.2
Ciclev10032464m.g Citrus clementina HOM05D006853 ORTHO05D008906 6.1e-72 275.0 272 55.1
Thecc.02G317700 Theobroma cacao HOM05D006853 ORTHO05D008906 1.4e-71 273.9 277 55.6
CAN.G184.17 Capsicum annuum HOM05D006853 ORTHO05D008906 1.8e-71 273.5 274 55.8
Duzib268G1722 Durio zibethinus HOM05D006853 ORTHO05D008906 5.1e-71 271.9 279 56.6
Gohir.A03G107900 Gossypium hirsutum HOM05D006853 ORTHO05D008906 6.7e-71 271.6 277 55.2
Lj6P771T55 Lonicera japonica HOM05D006853 ORTHO05D008906 2.0e-70 270.0 271 56.1
Gohir.D02G132900 Gossypium hirsutum HOM05D006853 ORTHO05D008906 5.7e-70 268.5 277 54.9
CANSAT64G2393 Cannabis sativa HOM05D006853 ORTHO05D008906 7.4e-70 268.1 272 52.6
PGSC0003DMG400025119 Solanum tuberosum HOM05D006853 ORTHO05D008906 7.4e-70 268.1 277 54.2
Cpa.g.sc53.10 Carica papaya HOM05D006853 ORTHO05D008906 9.7e-70 267.7 277 53.1
Peaxi162Scf00188g00063 Petunia axillaris HOM05D006853 ORTHO05D008906 1.7e-69 266.9 277 54.5
QL03p047845 Quercus lobata HOM05D006853 ORTHO05D008906 2.8e-69 266.2 272 52.9
Sopen05g006060 Solanum pennellii HOM05D006853 ORTHO05D008906 2.8e-69 266.2 277 53.4
CiPaw.06G096100 Carya illinoinensis HOM05D006853 ORTHO05D008906 4.8e-69 265.4 278 52.2
Potri.010G134600 Populus trichocarpa HOM05D006853 ORTHO05D008906 1.1e-68 264.2 278 52.5
Solyc05g010290.3 Solanum lycopersicum HOM05D006853 ORTHO05D008906 2.4e-68 263.1 277 53.1
TWI31G0390 Tripterygium wilfordii HOM05D006853 ORTHO05D008906 5.3e-68 261.9 261 54.4
CSS0047872 Camellia sinensis var. sinensis HOM05D006853 ORTHO05D008906 1.2e-67 260.8 278 51.4
Sabra10G0103400 Salix brachista HOM05D006853 ORTHO05D008906 1.2e-67 260.8 278 52.2
Rhsim09G0117300 Rhododendron simsii HOM05D006853 ORTHO05D008906 1.0e-66 257.7 278 51.8
Actinidia31918 Actinidia chinensis HOM05D006853 ORTHO05D006634 1.3e-66 257.3 265 52.5
Cfa009867 Carpinus fangiana HOM05D006853 ORTHO05D008906 1.7e-66 256.9 259 54.1
Haze_23238 Corylus avellana HOM05D006853 ORTHO05D008906 6.5e-66 255.0 277 51.6
Eucgr.B03092 Eucalyptus grandis HOM05D006853 ORTHO05D008906 6.5e-66 255.0 277 53.4
Hma1.2p1_0762F.1_g214380 Hydrangea macrophylla HOM05D006853 ORTHO05D008906 8.5e-66 254.6 272 54.0
Manes.06G077700 Manihot esculenta HOM05D006853 ORTHO05D008906 1.1e-65 254.2 277 51.3
PGR102G0342 Punica granatum HOM05D006853 ORTHO05D008906 1.1e-65 254.2 280 52.1
SalBow8G0220 Salvia bowleyana HOM05D006853 ORTHO05D008906 1.1e-65 254.2 274 51.8
SalBow8G1387 Salvia bowleyana HOM05D006853 ORTHO05D008906 1.1e-65 254.2 274 51.8
Sed0015072 Sechium edule HOM05D006853 ORTHO05D008906 1.1e-65 254.2 279 52.0
Sc11g0002760 Simmondsia chinensis HOM05D006853 ORTHO05D008906 2.1e-64 250.0 277 52.3
AUR62007823 Chenopodium quinoa HOM05D006853 ORTHO05D008906 2.7e-64 249.6 277 50.5
Potri.008G110700 Populus trichocarpa HOM05D006853 ORTHO05D008906 3.6e-64 249.2 278 51.4
Cc11_g11200 Coffea canephora HOM05D006853 ORTHO05D008906 6.1e-64 248.4 271 50.2
Prupe.1G299000 Prunus persica HOM05D006853 ORTHO05D006634 6.1e-64 248.4 245 55.1
Hund25134 Selenicereus undatus HOM05D006853 ORTHO05D008906 6.1e-64 248.4 275 51.3
TAR624G1108 Trochodendron aralioides HOM05D006853 ORTHO05D008906 8.0e-64 248.1 272 53.3
MELO3C005171.2 Cucumis melo HOM05D006853 ORTHO05D008906 1.8e-63 246.9 278 51.4
PSO541G5551 Papaver somniferum HOM05D006853 ORTHO05D008906 1.8e-63 246.9 272 51.8
Oeu054577.1 Olea europaea HOM05D006853 ORTHO05D008906 3.0e-63 246.1 275 51.6
Oeu024136.2 Olea europaea HOM05D006853 ORTHO05D008906 8.8e-63 244.6 274 50.7
HanXRQChr08g0214781 Helianthus annuus HOM05D006853 ORTHO05D008906 1.1e-62 244.2 271 51.3
CsaV3_5G018880 Cucumis sativus L. HOM05D006853 ORTHO05D008906 1.5e-62 243.8 279 49.8
MSTRG.7709 Avicennia marina HOM05D006853 ORTHO05D008906 2.6e-62 243.0 275 50.5
PSO675G5986 Papaver somniferum HOM05D006853 ORTHO05D008906 2.6e-62 243.0 272 51.5
ClCG01G007410 Citrullus lanatus HOM05D006853 ORTHO05D008906 9.7e-62 241.1 279 48.4
MD13G1053100 Malus domestica HOM05D006853 ORTHO05D008906 9.7e-62 241.1 278 50.7
Oeu054573.1 Olea europaea HOM05D006853 ORTHO05D008906 2.8e-61 239.6 275 51.6
Oeu054575.1 Olea europaea HOM05D006853 ORTHO05D008906 2.8e-61 239.6 275 51.6
RcHm_v2.0_Chr4g0436821 Rosa chinensis HOM05D006853 ORTHO05D008906 3.7e-61 239.2 272 50.0
FvH4_4g28700 Fragaria vesca HOM05D006853 ORTHO05D008906 4.8e-61 238.8 278 48.2
FAN12G0570 Fragaria x ananassa HOM05D006853 ORTHO05D008906 4.8e-61 238.8 276 48.9
Ah.02g127470 Amaranthus hybridus HOM05D001046 ORTHO05D002934 1.4e-60 237.3 263 51.3
ECA233G2927 Erigeron canadensis HOM05D006853 ORTHO05D006634 2.4e-60 236.5 242 52.1
MD16G1052100 Malus domestica HOM05D006853 ORTHO05D008906 3.1e-60 236.1 278 50.0
Lsat_1_v5_gn_8_37640 Lactuca sativa HOM05D006853 ORTHO05D008906 1.3e-58 230.7 274 48.2
FAN07G1226 Fragaria x ananassa HOM05D006853 ORTHO05D006634 1.7e-58 230.3 244 50.4
Nn7g37287 Nelumbo nucifera HOM05D006853 ORTHO05D008906 2.2e-58 229.9 272 48.5
Dinv16569 Davidia involucrata HOM05D000044 ORTHO05D006634 1.6e-56 223.8 214 56.5
HanXRQChr15g0469081 Helianthus annuus HOM05D006853 ORTHO05D008906 2.1e-56 223.4 217 54.8
Migut.L01132 Erythranthe guttata HOM05D006853 ORTHO05D006634 6.1e-56 221.9 250 50.4
Actinidia30174 Actinidia chinensis HOM05D006853 ORTHO05D008906 1.2e-51 207.6 194 57.2
Lalb_Chr17g0341651 Lupinus albus HOM05D006853 ORTHO05D008906 1.5e-49 200.7 271 44.6
SGA_v2.0_scaffold16G07849 Striga asiatica HOM05D006853 ORTHO05D008906 3.2e-49 199.5 273 46.2
SEGI_13208 Sequoiadendron giganteum HOM05D006853 ORTHO05D008906 1.4e-47 194.1 270 41.1
Aqoxy5G01341 Aquilegia oxysepala HOM05D006853 ORTHO05D008906 8.3e-45 184.9 235 48.1
Medtr5g049260 Medicago truncatula HOM05D006853 ORTHO05D008906 2.0e-43 180.3 272 42.6
Medtr5g049270 Medicago truncatula HOM05D006853 ORTHO05D008906 2.0e-43 180.3 272 42.6
Hma1.2p1_0125F.1_g058490 Hydrangea macrophylla HOM05D006853 ORTHO05D008906 3.5e-43 179.5 157 58.6
VMungo1215G2951 Vigna mungo HOM05D006853 ORTHO05D008906 1.7e-42 177.2 271 39.5
SHI15728 Sapria himalayana HOM05D006853 ORTHO05D008906 2.3e-42 176.8 219 46.1
unitig_8.g3212 Utricularia gibba HOM05D006853 ORTHO05D008906 6.6e-42 175.3 274 41.2
Ca_05156_v3 Cicer arietinum L. HOM05D006853 ORTHO05D008906 1.9e-41 173.7 272 41.9
Glyma.02G127200 Glycine max HOM05D006853 ORTHO05D008906 5.6e-41 172.2 273 41.0
Glyma.01G070150 Glycine max HOM05D006853 ORTHO05D008906 6.1e-40 168.7 273 40.3
Phvul.002G082000 Phaseolus vulgaris HOM05D006853 ORTHO05D008906 2.0e-38 163.7 259 38.6
HPP92_020023 Vanilla planifolia HOM05D006853 ORTHO05D008906 2.0e-38 163.7 243 43.2
ATR0721G025 Amborella trichopoda HOM05D006853 ORTHO05D008906 1.3e-37 161.0 276 38.4
Lj2g0007836 Lotus japonicus HOM05D000044 ORTHO05D006634 8.3e-37 158.3 234 40.6
GSVIVG01010168001 Vitis vinifera HOM05D000044 ORTHO05D006634 2.7e-35 153.3 242 38.4
Pp3c1_39830 Physcomitrium patens HOM05D006853 ORTHO05D008906 3.9e-34 149.4 239 35.1
arahy.Tifrunner.gnm1.ann1.N8UYM2 Arachis hypogaea HOM05D006853 ORTHO05D008906 7.3e-33 145.2 282 37.2
arahy.Tifrunner.gnm1.ann1.QR8D6Y Arachis hypogaea HOM05D006853 ORTHO05D008906 1.3e-29 134.4 253 37.5
AagrBONN_evm.TU.Sc2ySwM_368.2648 Anthoceros agrestis HOM05D006853 ORTHO05D008906 2.1e-24 117.1 239 33.9
SMO164G0046 Selaginella moellendorffii HOM05D006853 ORTHO05D008906 4.7e-24 115.9 223 33.2
CDE03G0412 Ceratophyllum demersum HOM05D001926 ORTHO05D002121 1.4e-23 114.4 153 44.4
Mapoly0008s0082 Marchantia polymorpha HOM05D006853 ORTHO05D008906 8.9e-23 111.7 274 30.7
Os01g0219000 Oryza sativa ssp. japonica HOM05D006853 ORTHO05D008906 1.2e-19 101.3 223 33.2
AL5G13960 Arabidopsis lyrata HOM05D006853 ORTHO05D008906 3.9e-18 96.3 91 57.1
Zm00001eb119820 Zea mays HOM05D006853 ORTHO05D008906 3.9e-18 96.3 266 28.6
Psat2g098640 Pisum sativum HOM05D006853 ORTHO05D008906 6.6e-18 95.5 118 44.9
Psat1g127240 Pisum sativum HOM05D002500 ORTHO05D002587 3.3e-17 93.2 92 52.2
HanXRQChr12g0364531 Helianthus annuus HOM05D006853 ORTHO05D008906 2.0e-14 84.0 108 45.4
Cre01.g037650 Chlamydomonas reinhardtii HOM05D006853 ORTHO05D008906 3.2e-12 76.6 153 32.7
ATR0737G064 Amborella trichopoda HOM05D006853 ORTHO05D008906 7.8e-11 72.0 106 39.6
PSO478G3347 Papaver somniferum HOM05D006853 ORTHO05D008906 1.1e-07 61.6 52 57.7
BraA09t38070Z Brassica rapa HOM05D006853 ORTHO05D008906 5.8e-06 55.8 37 75.7


User provided reference genes

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