Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 9.0e-77 290.4 173 100.0
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 2.5e-71 272.3 173 90.8
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 3.3e-71 271.9 173 94.8
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 1.6e-70 269.6 173 90.8
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 1.6e-70 269.6 173 90.8
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 1.3e-64 250.0 177 84.2
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 2.5e-55 219.2 183 71.6
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 7.4e-55 217.6 183 74.3
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 1.3e-54 216.9 183 74.3
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 2.1e-54 216.1 188 70.2
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 3.7e-54 215.3 183 73.2
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 3.7e-54 215.3 183 73.2
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 3.7e-54 215.3 183 73.2
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 1.1e-53 213.8 190 72.1
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 9.0e-53 210.7 192 66.1
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 1.4e-50 203.4 194 70.1
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 1.4e-50 203.4 197 69.0
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 2.9e-43 179.1 199 62.8
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 3.6e-41 172.2 190 62.6
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 1.1e-34 150.6 174 56.9
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 4.2e-34 148.7 175 60.6
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 1.4e-32 143.7 173 59.0
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 8.8e-32 141.0 173 56.1
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 1.5e-31 140.2 173 59.0
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 2.0e-31 139.8 173 57.8
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 7.4e-31 137.9 177 54.8
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 1.8e-29 133.3 178 56.2
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 5.3e-29 131.7 129 61.2
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 9.1e-29 131.0 173 57.2
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 9.1e-29 131.0 179 55.3
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 2.0e-28 129.8 173 55.5
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 3.5e-28 129.0 124 61.3
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 5.2e-24 115.2 118 66.1
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 6.7e-24 114.8 124 57.3
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 8.8e-24 114.4 124 57.3
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 8.8e-24 114.4 124 57.3
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 2.2e-22 109.8 126 52.4
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 4.8e-22 108.6 132 53.8
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 9.1e-21 104.4 126 50.0
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 1.2e-20 104.0 147 51.0
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 7.7e-20 101.3 124 53.2
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 1.7e-19 100.1 138 47.1
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 2.2e-19 99.8 149 49.7
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 2.5e-18 96.3 119 47.9
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 2.5e-18 96.3 124 47.6
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 5.5e-18 95.1 126 55.6
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 5.5e-18 95.1 154 43.5
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 7.2e-18 94.7 124 46.8
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 9.4e-18 94.4 140 44.3
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 9.4e-18 94.4 139 45.3
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 1.2e-17 94.0 140 44.3
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 2.1e-17 93.2 142 47.2
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 2.1e-17 93.2 147 44.2
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 2.7e-17 92.8 123 46.3
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 2.7e-17 92.8 136 41.9
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 2.7e-17 92.8 136 41.9
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 3.6e-17 92.4 132 50.8
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 3.6e-17 92.4 137 43.8
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 4.7e-17 92.0 126 43.7
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 4.7e-17 92.0 127 48.8
THA.LOC104805946 Tarenaya hassleriana HOM05D003853 ORTHO05D004171 6.1e-17 91.7 86 61.6
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 8.0e-17 91.3 147 49.0
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 8.0e-17 91.3 148 37.8
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 1.4e-16 90.5 126 45.2
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 1.4e-16 90.5 144 41.0
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 1.4e-16 90.5 144 41.0
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 1.8e-16 90.1 141 48.9
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 2.3e-16 89.7 87 57.5
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 3.0e-16 89.4 135 47.4
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 4.0e-16 89.0 125 49.6
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 5.2e-16 88.6 135 43.7
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 8.8e-16 87.8 76 57.9
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.2e-15 87.4 133 44.4
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 1.2e-15 87.4 143 51.0
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 2.0e-15 86.7 140 40.7
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 2.0e-15 86.7 120 45.0
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 2.0e-15 86.7 129 44.2
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 2.0e-15 86.7 122 43.4
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 2.6e-15 86.3 138 45.7
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 4.4e-15 85.5 131 48.9
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 5.7e-15 85.1 132 40.9
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 5.7e-15 85.1 144 43.1
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 5.7e-15 85.1 144 43.1
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 7.5e-15 84.7 95 47.4
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 7.5e-15 84.7 126 44.4
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 7.5e-15 84.7 136 39.0
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 7.5e-15 84.7 132 45.5
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 1.7e-14 83.6 116 45.7
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 1.7e-14 83.6 149 40.3
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 2.2e-14 83.2 132 44.7
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 3.7e-14 82.4 70 57.1
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 3.7e-14 82.4 136 44.9
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.1e-13 80.9 74 60.8
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.1e-13 80.9 137 43.1
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 1.1e-13 80.9 155 38.1
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.4e-13 80.5 96 53.1
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 1.8e-13 80.1 130 43.1
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.4e-13 79.7 135 41.5
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 2.4e-13 79.7 74 59.5
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 2.4e-13 79.7 178 43.8
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 2.4e-13 79.7 134 39.6
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 3.1e-13 79.3 123 43.1
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 4.1e-13 79.0 137 40.1
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 4.1e-13 79.0 125 52.0
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 7.0e-13 78.2 80 50.0
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 9.1e-13 77.8 70 57.1
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 1.2e-12 77.4 129 48.8
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 1.2e-12 77.4 69 55.1
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 1.2e-12 77.4 132 40.9
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 1.6e-12 77.0 144 45.1
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 2.7e-12 76.3 79 49.4
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 4.5e-12 75.5 176 39.2
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 4.5e-12 75.5 133 43.6
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 4.5e-12 75.5 84 50.0
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 7.7e-12 74.7 73 52.1
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 1.0e-11 74.3 80 55.0
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 1.0e-11 74.3 144 45.8
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 1.3e-11 73.9 174 36.8
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 2.2e-11 73.2 171 37.4
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 2.2e-11 73.2 119 49.6
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 2.2e-11 73.2 123 42.3
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 2.9e-11 72.8 74 52.7
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 2.9e-11 72.8 137 43.8
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 2.9e-11 72.8 137 43.8
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 2.9e-11 72.8 139 35.3
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 5.0e-11 72.0 122 46.7
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 5.0e-11 72.0 73 53.4
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 6.5e-11 71.6 142 41.5
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 8.5e-11 71.2 85 48.2
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.1e-10 70.9 67 58.2
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 1.1e-10 70.9 132 35.6
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 1.5e-10 70.5 114 51.8
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 1.5e-10 70.5 124 39.5
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 1.9e-10 70.1 74 52.7
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.9e-10 70.1 125 38.4
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 3.2e-10 69.3 140 43.6
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 3.2e-10 69.3 95 43.2
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 3.2e-10 69.3 80 47.5
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 4.2e-10 68.9 73 52.1
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 4.2e-10 68.9 124 43.5
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 4.2e-10 68.9 179 41.9
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 7.2e-10 68.2 173 38.2
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 9.4e-10 67.8 160 42.5
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 1.2e-09 67.4 121 37.2
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 1.2e-09 67.4 133 34.6
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.6e-09 67.0 73 47.9
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 1.6e-09 67.0 85 42.4
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 2.1e-09 66.6 116 44.0
Manes.01G030000 Manihot esculenta HOM05D003853 ORTHO05D004171 2.1e-09 66.6 98 42.9
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 2.1e-09 66.6 143 39.2
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 3.6e-09 65.9 75 49.3
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 6.1e-09 65.1 156 41.0
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 6.1e-09 65.1 136 34.6
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 1.0e-08 64.3 91 45.1
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 1.8e-08 63.5 145 33.1
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.3e-08 63.2 123 43.9
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 3.0e-08 62.8 74 48.6
Psat2g127960 Pisum sativum HOM05D003853 ORTHO05D004171 4.0e-08 62.4 113 46.0
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 4.0e-08 62.4 122 41.8
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 5.2e-08 62.0 99 43.4
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 6.8e-08 61.6 145 39.3
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 8.8e-08 61.2 80 46.2
FAN17G1589 Fragaria x ananassa HOM05D003853 ORTHO05D004171 1.5e-07 60.5 124 42.7
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 3.4e-07 59.3 90 48.9
FAN12G3704 Fragaria x ananassa HOM05D002141 ORTHO05D002119 4.4e-07 58.9 143 42.0
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 4.4e-07 58.9 71 46.5
CAN.G1340.8 Capsicum annuum HOM05D003853 ORTHO05D004171 7.5e-07 58.2 99 39.4
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 1.7e-06 57.0 92 44.6
Ca_04944_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 2.2e-06 56.6 135 36.3
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 2.2e-06 56.6 135 39.3
Solyc05g012570.3 Solanum lycopersicum HOM05D003853 ORTHO05D004171 2.8e-06 56.2 90 42.2


User provided reference genes

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