Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p32590 Brassica napus HOM05D005547 ORTHO05D006887 1.2e-106 389.8 196 100.0
BcaC04g21537 Brassica carinata HOM05D005547 ORTHO05D006887 9.6e-51 204.1 103 97.1
A09p23740 Brassica napus HOM05D005547 ORTHO05D006887 9.6e-51 204.1 103 97.1
C09p30580 Brassica napus HOM05D005547 ORTHO05D006887 9.6e-51 204.1 103 97.1
BolC9t55922H Brassica oleracea HOM05D005547 ORTHO05D006887 9.6e-51 204.1 103 97.1
BraA09t37975Z Brassica rapa HOM05D005547 ORTHO05D006887 9.6e-51 204.1 103 97.1
Sp2g13460 Schrenkiella parvula HOM05D005547 ORTHO05D006887 9.6e-51 204.1 103 97.1
Thhalv10005178m.g Eutrema salsugineum HOM05D005547 ORTHO05D006887 2.1e-50 203.0 103 96.1
BcaC06g31254 Brassica carinata HOM05D005547 ORTHO05D006887 8.1e-50 201.1 103 95.1
BcaC06g31255 Brassica carinata HOM05D005547 ORTHO05D006887 8.1e-50 201.1 103 95.1
A06p43870 Brassica napus HOM05D005547 ORTHO05D006887 8.1e-50 201.1 103 95.1
BraA06t27263Z Brassica rapa HOM05D005547 ORTHO05D006887 8.1e-50 201.1 103 95.1
BcaC06g34084 Brassica carinata HOM05D005547 ORTHO05D006887 1.8e-49 199.9 103 95.1
C07p32870 Brassica napus HOM05D005547 ORTHO05D006887 1.8e-49 199.9 103 95.1
BolC7t43802H Brassica oleracea HOM05D005547 ORTHO05D006887 1.8e-49 199.9 103 95.1
BcaB07g30360 Brassica carinata HOM05D005547 ORTHO05D006887 9.0e-49 197.6 104 95.2
Carub.0005s0107 Capsella rubella HOM05D005547 ORTHO05D006887 2.9e-47 192.6 103 91.3
CARHR144680 Cardamine hirsuta HOM05D005547 ORTHO05D006887 1.4e-46 190.3 103 90.3
AL5G11260 Arabidopsis lyrata HOM05D005547 ORTHO05D006887 1.6e-45 186.8 104 90.4
AT2G02050 Arabidopsis thaliana HOM05D005547 ORTHO05D006887 1.1e-43 180.6 104 87.5
Aa31LG2G7900 Aethionema arabicum HOM05D000012 ORTHO05D000567 2.1e-42 176.4 127 71.7
THA.LOC104824108 Tarenaya hassleriana HOM05D005547 ORTHO05D006887 8.1e-42 174.5 103 83.5
BcaB07g30717 Brassica carinata HOM05D005547 ORTHO05D006887 1.1e-41 174.1 93 90.3
BcaB07g30718 Brassica carinata HOM05D005547 ORTHO05D006887 1.1e-41 174.1 93 90.3
TWI53G0286 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 2.4e-41 172.9 104 81.7
Manes.17G091700 Manihot esculenta HOM05D005547 ORTHO05D006887 3.1e-41 172.6 103 80.6
PGR142G0372 Punica granatum HOM05D005547 ORTHO05D006887 3.1e-41 172.6 103 83.5
Cpa.g.sc2.79 Carica papaya HOM05D005547 ORTHO05D006887 4.0e-41 172.2 103 83.5
Ciclev10017277m.g Citrus clementina HOM05D005547 ORTHO05D006887 6.9e-41 171.4 104 81.7
THA.LOC104805110 Tarenaya hassleriana HOM05D005547 ORTHO05D006887 1.2e-40 170.6 103 83.5
Duzib251G0939 Durio zibethinus HOM05D005547 ORTHO05D006887 3.4e-40 169.1 103 81.6
Manes.15G140700 Manihot esculenta HOM05D005547 ORTHO05D006887 3.4e-40 169.1 103 79.6
Rhsim09G0081900 Rhododendron simsii HOM05D005547 ORTHO05D006887 3.4e-40 169.1 105 81.0
Thecc.02G300400 Theobroma cacao HOM05D005547 ORTHO05D006887 3.4e-40 169.1 103 81.6
Potri.010G099900 Populus trichocarpa HOM05D005547 ORTHO05D006887 5.8e-40 168.3 103 80.6
PSO063G0668 Papaver somniferum HOM05D005547 ORTHO05D006887 7.6e-40 167.9 103 80.6
Potri.008G141900 Populus trichocarpa HOM05D005547 ORTHO05D006887 7.6e-40 167.9 103 80.6
PSO782G2712 Papaver somniferum HOM05D005547 ORTHO05D006887 1.7e-39 166.8 103 79.6
Sabra08G0107500 Salix brachista HOM05D005547 ORTHO05D006887 1.7e-39 166.8 102 79.4
Duzib268G1003 Durio zibethinus HOM05D005547 ORTHO05D006887 2.2e-39 166.4 103 79.6
Gohir.A03G114100 Gossypium hirsutum HOM05D005547 ORTHO05D006887 2.2e-39 166.4 103 81.6
Prupe.1G340400 Prunus persica HOM05D005547 ORTHO05D006887 2.2e-39 166.4 99 80.8
Solyc04g008490.2 Solanum lycopersicum HOM05D005547 ORTHO05D006887 2.2e-39 166.4 103 80.6
Sopen04g003640 Solanum pennellii HOM05D005547 ORTHO05D006887 2.2e-39 166.4 103 80.6
Gohir.D02G138500 Gossypium hirsutum HOM05D005547 ORTHO05D006887 2.9e-39 166.0 101 83.2
Gorai.005G154900 Gossypium raimondii HOM05D005547 ORTHO05D006887 2.9e-39 166.0 103 81.6
Gorai.005G155000 Gossypium raimondii HOM05D005547 ORTHO05D006887 2.9e-39 166.0 103 81.6
MD13G1013300 Malus domestica HOM05D005547 ORTHO05D006887 2.9e-39 166.0 99 80.8
Oeu024849.1 Olea europaea HOM05D005547 ORTHO05D006887 4.9e-39 165.2 103 78.6
SGA_v2.0_scaffold65G22157 Striga asiatica HOM05D005547 ORTHO05D006887 4.9e-39 165.2 103 78.6
Atru.chr11.1034 Acer truncatum HOM05D005547 ORTHO05D006887 6.4e-39 164.9 102 78.4
CANSAT78G0133 Cannabis sativa HOM05D005547 ORTHO05D006887 6.4e-39 164.9 103 79.6
Sabra10G0072400 Salix brachista HOM05D005547 ORTHO05D006887 6.4e-39 164.9 103 80.6
CAN.G458.10 Capsicum annuum HOM05D005547 ORTHO05D006887 8.4e-39 164.5 103 78.6
MSTRG.2096 Avicennia marina HOM05D005547 ORTHO05D006887 1.1e-38 164.1 101 82.2
Gohir.D02G138400 Gossypium hirsutum HOM05D005547 ORTHO05D006887 1.4e-38 163.7 103 80.6
MBI06_g29243_MAGBIO Magnolia biondii HOM05D005547 ORTHO05D006887 1.4e-38 163.7 103 80.6
MD16G1010200 Malus domestica HOM05D005547 ORTHO05D006887 1.4e-38 163.7 99 78.8
Nn8g41124 Nelumbo nucifera HOM05D005547 ORTHO05D006887 1.4e-38 163.7 103 78.6
COL.COLO4_27546 Corchorus olitorius HOM05D005547 ORTHO05D006887 2.4e-38 162.9 103 79.6
MBI06_g19635_MAGBIO Magnolia biondii HOM05D005547 ORTHO05D006887 2.4e-38 162.9 109 78.9
Nitab4.5_0000129g0490 Nicotiana tabacum HOM05D005547 ORTHO05D006887 2.4e-38 162.9 105 77.1
CiPaw.06G057000 Carya illinoinensis HOM05D005547 ORTHO05D006887 3.2e-38 162.5 102 78.4
Duzib248G0639 Durio zibethinus HOM05D005547 ORTHO05D006887 4.2e-38 162.2 103 77.7
MSTRG.13653 Avicennia marina HOM05D005547 ORTHO05D006887 5.4e-38 161.8 103 79.6
CSS0022085 Camellia sinensis var. sinensis HOM05D005547 ORTHO05D006887 5.4e-38 161.8 99 81.8
CSS0041328 Camellia sinensis var. sinensis HOM05D005547 ORTHO05D006887 5.4e-38 161.8 99 81.8
TWI77G0905 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 5.4e-38 161.8 104 76.9
ClCG11G000640 Citrullus lanatus HOM05D005547 ORTHO05D006887 7.1e-38 161.4 103 77.7
Nitab4.5_0001091g0130 Nicotiana tabacum HOM05D005547 ORTHO05D006887 7.1e-38 161.4 105 76.2
TWI77G0558 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 7.1e-38 161.4 102 78.4
Lalb_Chr02g0143381 Lupinus albus HOM05D005547 ORTHO05D006887 1.2e-37 160.6 103 76.7
Cfa015074 Carpinus fangiana HOM05D005547 ORTHO05D006887 1.6e-37 160.2 102 79.4
Ca_11205_v3 Cicer arietinum L. HOM05D005547 ORTHO05D006887 1.6e-37 160.2 103 75.7
TAR295G0002 Trochodendron aralioides HOM05D005547 ORTHO05D006887 1.6e-37 160.2 103 74.8
TAR622G1295 Trochodendron aralioides HOM05D005547 ORTHO05D006887 1.6e-37 160.2 103 74.8
unitig_699.g19647 Utricularia gibba HOM05D005547 ORTHO05D006887 1.6e-37 160.2 103 77.7
Sc03g0005980 Simmondsia chinensis HOM05D005547 ORTHO05D006887 2.1e-37 159.8 103 77.7
ATR0807G170 Amborella trichopoda HOM05D005547 ORTHO05D006887 2.7e-37 159.5 101 78.2
Haze_11478 Corylus avellana HOM05D005547 ORTHO05D006887 3.5e-37 159.1 102 78.4
Gohir.A03G114000 Gossypium hirsutum HOM05D005547 ORTHO05D006887 3.5e-37 159.1 103 78.6
Medtr1g112480 Medicago truncatula HOM05D005547 ORTHO05D006887 4.6e-37 158.7 102 79.4
TPR.G2488 Trifolium pratense HOM05D005547 ORTHO05D006887 4.6e-37 158.7 105 78.1
RcHm_v2.0_Chr4g0445601 Rosa chinensis HOM05D005547 ORTHO05D006887 6.0e-37 158.3 99 76.8
Lalb_Chr21g0306901 Lupinus albus HOM05D005547 ORTHO05D006887 7.9e-37 157.9 103 72.8
Migut.D01210 Erythranthe guttata HOM05D005547 ORTHO05D006887 1.0e-36 157.5 101 77.2
Eucgr.B02628 Eucalyptus grandis HOM05D005547 ORTHO05D006887 1.8e-36 156.8 107 76.6
Ah.03g147190 Amaranthus hybridus HOM05D005547 ORTHO05D006887 3.0e-36 156.0 103 74.8
Nitab4.5_0003889g0030 Nicotiana tabacum HOM05D005547 ORTHO05D006887 3.0e-36 156.0 103 75.7
Lsat_1_v5_gn_5_36641 Lactuca sativa HOM05D005547 ORTHO05D006887 3.9e-36 155.6 103 71.8
HanXRQChr12g0365891 Helianthus annuus HOM05D005547 ORTHO05D006887 5.1e-36 155.2 103 72.8
Psat6g231800 Pisum sativum HOM05D005547 ORTHO05D006887 5.1e-36 155.2 103 72.8
SHI04242 Sapria himalayana HOM05D005547 ORTHO05D006887 6.7e-36 154.8 100 74.0
QL03p040577 Quercus lobata HOM05D005547 ORTHO05D006887 1.1e-35 154.1 103 74.8
QL03p040948 Quercus lobata HOM05D005547 ORTHO05D006887 1.1e-35 154.1 103 74.8
Sed0015045 Sechium edule HOM05D005547 ORTHO05D006887 1.5e-35 153.7 103 74.8
MELO3C022540.2 Cucumis melo HOM05D005547 ORTHO05D006887 1.9e-35 153.3 99 76.8
FAN07G0567 Fragaria x ananassa HOM05D005547 ORTHO05D006887 1.9e-35 153.3 102 73.5
FAN17G0411 Fragaria x ananassa HOM05D005547 ORTHO05D006887 1.9e-35 153.3 102 73.5
Sed0021722 Sechium edule HOM05D005547 ORTHO05D006887 1.9e-35 153.3 103 73.8
FvH4_4g35970 Fragaria vesca HOM05D005547 ORTHO05D006887 2.5e-35 152.9 102 73.5
FAN12G1717 Fragaria x ananassa HOM05D005547 ORTHO05D006887 2.5e-35 152.9 102 73.5
FAN22G0273 Fragaria x ananassa HOM05D005547 ORTHO05D006887 5.6e-35 151.8 102 72.5
SalBow2G0745 Salvia bowleyana HOM05D005547 ORTHO05D006887 2.1e-34 149.8 94 80.9
Lj5g0000051 Lotus japonicus HOM05D005547 ORTHO05D006887 2.8e-34 149.4 100 75.0
Phvul.007G019800 Phaseolus vulgaris HOM05D005547 ORTHO05D006887 3.7e-34 149.1 103 72.8
DCAR_002637 Daucus carota HOM05D005547 ORTHO05D006887 1.8e-33 146.7 98 72.4
AUR62003480 Chenopodium quinoa HOM05D005547 ORTHO05D006887 4.0e-33 145.6 94 75.5
Glyma.20G108500 Glycine max HOM05D005547 ORTHO05D006887 4.0e-33 145.6 103 70.9
HPP92_022540 Vanilla planifolia HOM05D005547 ORTHO05D006887 2.6e-32 142.9 98 73.5
AUR62017789 Chenopodium quinoa HOM05D005547 ORTHO05D006887 1.3e-31 140.6 94 73.4
Peaxi162Scf00025g00059 Petunia axillaris HOM05D005547 ORTHO05D006887 1.3e-31 140.6 83 80.7
Ah.02g120230 Amaranthus hybridus HOM05D005547 ORTHO05D006887 3.8e-31 139.0 103 68.0
Hma1.2p1_0068F.1_g037220 Hydrangea macrophylla HOM05D005547 ORTHO05D006887 6.4e-31 138.3 100 70.0
Nitab4.5_0000944g0080 Nicotiana tabacum HOM05D005547 ORTHO05D006887 2.5e-30 136.3 73 86.3
Zm00001eb002320 Zea mays HOM05D005547 ORTHO05D006887 5.5e-30 135.2 97 70.1
Os03g0129900 Oryza sativa ssp. japonica HOM05D005547 ORTHO05D006887 7.1e-30 134.8 96 69.8
ECA233G2357 Erigeron canadensis HOM05D005547 ORTHO05D006887 3.0e-28 129.4 74 79.7
arahy.Tifrunner.gnm1.ann1.VES97W Arachis hypogaea HOM05D005547 ORTHO05D006887 8.7e-28 127.9 83 74.7
Cc11_g05010 Coffea canephora HOM05D005547 ORTHO05D006887 2.5e-27 126.3 69 82.6
MD17G1273300 Malus domestica HOM05D005547 ORTHO05D006887 6.2e-26 121.7 68 80.9
BcaC03g17109 Brassica carinata HOM05D005547 ORTHO05D006887 2.6e-24 116.3 122 59.0
Haze_10731 Corylus avellana HOM05D005547 ORTHO05D006887 5.8e-24 115.2 86 67.4
C02p50170 Brassica napus HOM05D005547 ORTHO05D006887 1.7e-23 113.6 101 63.4
BolC2t11096H Brassica oleracea HOM05D005547 ORTHO05D006887 1.7e-23 113.6 101 63.4
Mapoly0058s0109 Marchantia polymorpha HOM05D005547 ORTHO05D006887 1.2e-21 107.5 70 68.6
Pp3c10_11190 Physcomitrium patens HOM05D005547 ORTHO05D006887 1.2e-21 107.5 75 64.0
Pp3c14_25130 Physcomitrium patens HOM05D005547 ORTHO05D006887 1.2e-21 107.5 78 62.8
arahy.Tifrunner.gnm1.ann1.FEK9G3 Arachis hypogaea HOM05D005547 ORTHO05D006887 1.1e-17 94.4 64 62.5
CBR_g4786 Chara braunii HOM05D005547 ORTHO05D006887 1.4e-17 94.0 80 52.5
GSVIVG01000609001 Vitis vinifera HOM05D005547 ORTHO05D006887 2.4e-17 93.2 56 76.8
Gorai.002G169600 Gossypium raimondii HOM05D005547 ORTHO05D006887 6.9e-17 91.7 103 52.4
MCO06G054 Micromonas commoda HOM05D005547 ORTHO05D006887 1.0e-15 87.8 55 67.3
SMO356G0087 Selaginella moellendorffii HOM05D005547 ORTHO05D006887 1.1e-14 84.3 65 55.4
Glyma.14G132200 Glycine max HOM05D005547 ORTHO05D006887 1.4e-12 77.4 104 48.1
PRCOL_00006370 Prasinoderma coloniale HOM05D005547 ORTHO05D006887 4.1e-09 65.9 67 50.7
Cre06.g278188 Chlamydomonas reinhardtii HOM05D005547 ORTHO05D006887 1.1e-06 57.8 63 49.2


User provided reference genes

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