Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p32240 Brassica napus HOM05D005827 ORTHO05D005864 1.9e-78 295.8 158 100.0
BraA02t08240Z Brassica rapa HOM05D005827 ORTHO05D005864 1.9e-78 295.8 158 100.0
BcaC03g17064 Brassica carinata HOM05D005827 ORTHO05D005864 9.7e-78 293.5 158 98.7
C02p49840 Brassica napus HOM05D005827 ORTHO05D005864 1.6e-77 292.7 158 98.7
BolC2t11063H Brassica oleracea HOM05D005827 ORTHO05D005864 2.8e-77 292.0 158 98.1
BcaB07g30381 Brassica carinata HOM05D005827 ORTHO05D005864 5.9e-75 284.3 158 95.6
Sp2g13090 Schrenkiella parvula HOM05D005827 ORTHO05D005864 8.8e-71 270.4 158 91.8
Carub.0005s0059 Capsella rubella HOM05D005827 ORTHO05D005864 8.5e-66 253.8 158 85.4
Thhalv10005665m.g Eutrema salsugineum HOM05D005827 ORTHO05D005864 1.2e-59 233.4 179 74.9
AT2G01640 Arabidopsis thaliana HOM05D005827 ORTHO05D005864 2.1e-56 222.6 158 78.5
AL5G10740 Arabidopsis lyrata HOM05D005827 ORTHO05D005864 8.2e-53 210.7 158 76.6
THA.LOC104823732 Tarenaya hassleriana HOM05D005827 ORTHO05D005864 1.4e-52 209.9 154 74.0
Aa31LG2G8260 Aethionema arabicum HOM05D005827 ORTHO05D005864 2.7e-48 195.7 131 79.4
Duzib132G0170 Durio zibethinus HOM05D005827 ORTHO05D005864 4.4e-46 188.3 162 65.4
Manes.10G074300 Manihot esculenta HOM05D005827 ORTHO05D005864 3.8e-42 175.3 161 59.6
Thecc.02G106700 Theobroma cacao HOM05D005827 ORTHO05D005864 9.5e-41 170.6 146 62.3
CiPaw.06G170100 Carya illinoinensis HOM05D005827 ORTHO05D005864 2.3e-39 166.0 148 62.2
Potri.009G097000 Populus trichocarpa HOM05D005827 ORTHO05D005864 2.3e-39 166.0 161 59.6
Gohir.A03G186800 Gossypium hirsutum HOM05D005827 ORTHO05D005864 3.4e-38 162.2 133 63.2
Gorai.005G235500 Gossypium raimondii HOM05D005827 ORTHO05D005864 3.4e-38 162.2 133 63.2
Dinv15756 Davidia involucrata HOM05D005827 ORTHO05D005864 9.8e-38 160.6 152 60.5
Prupe.1G568500 Prunus persica HOM05D005827 ORTHO05D005864 1.3e-37 160.2 161 56.5
Aa31sc215G30 Aethionema arabicum HOM05D005827 ORTHO05D005864 1.7e-37 159.8 119 73.9
Cpa.g.sc246.10 Carica papaya HOM05D005827 ORTHO05D005864 6.3e-37 157.9 148 58.8
Atru.chr5.2579 Acer truncatum HOM05D005827 ORTHO05D005864 8.3e-37 157.5 162 57.4
Eucgr.G01363 Eucalyptus grandis HOM05D005827 ORTHO05D005864 1.4e-36 156.8 154 54.5
Hma1.2p1_0796F.1_g219120 Hydrangea macrophylla HOM05D005827 ORTHO05D005864 1.4e-36 156.8 160 56.9
Gohir.D02G207600 Gossypium hirsutum HOM05D005827 ORTHO05D005864 2.4e-36 156.0 133 62.4
Nitab4.5_0000209g0220 Nicotiana tabacum HOM05D005827 ORTHO05D005864 2.4e-36 156.0 155 56.1
Nitab4.5_0011210g0030 Nicotiana tabacum HOM05D000771 ORTHO05D005864 2.4e-36 156.0 155 56.8
QL11p034047 Quercus lobata HOM05D005827 ORTHO05D005864 2.4e-36 156.0 134 61.9
Haze_10160 Corylus avellana HOM05D005827 ORTHO05D005864 4.1e-36 155.2 129 62.0
Sopen12g028550 Solanum pennellii HOM05D005827 ORTHO05D005864 5.4e-36 154.8 155 56.8
Solyc12g056030.2 Solanum lycopersicum HOM05D005827 ORTHO05D005864 1.2e-35 153.7 155 56.8
QL11p033993 Quercus lobata HOM05D005827 ORTHO05D005864 2.0e-35 152.9 125 62.4
CANSAT11G0172 Cannabis sativa HOM05D005827 ORTHO05D005864 2.7e-35 152.5 132 61.4
CAN.G517.16 Capsicum annuum HOM05D005827 ORTHO05D005864 3.5e-35 152.1 145 58.6
PGSC0003DMG400005012 Solanum tuberosum HOM05D005827 ORTHO05D005864 4.5e-35 151.8 155 55.5
Rhsim11G0160600 Rhododendron simsii HOM05D005827 ORTHO05D005864 5.9e-35 151.4 154 57.1
CSS0006486 Camellia sinensis var. sinensis HOM05D005827 ORTHO05D005864 1.0e-34 150.6 152 57.9
MD15G1423200 Malus domestica HOM05D005827 ORTHO05D005864 1.0e-34 150.6 140 56.4
Peaxi162Scf00880g00322 Petunia axillaris HOM05D005827 ORTHO05D005864 1.3e-34 150.2 150 56.0
FAN04G0262 Fragaria x ananassa HOM05D005827 ORTHO05D005864 3.8e-34 148.7 151 57.0
Nitab4.5_0001647g0080 Nicotiana tabacum HOM05D005827 ORTHO05D005864 5.0e-34 148.3 150 57.3
Cc02_g19170 Coffea canephora HOM05D005827 ORTHO05D005864 1.9e-33 146.4 138 60.1
PGR042G1992 Punica granatum HOM05D005827 ORTHO05D005864 2.5e-33 146.0 133 60.2
DCAR_029081 Daucus carota HOM05D005827 ORTHO05D005864 7.3e-33 144.4 135 58.5
COL.COLO4_32605 Corchorus olitorius HOM05D005827 ORTHO05D005864 9.5e-33 144.1 137 58.4
Sabra09G0074500 Salix brachista HOM05D005827 ORTHO05D005864 1.2e-32 143.7 188 48.4
RcHm_v2.0_Chr7g0222441 Rosa chinensis HOM05D005827 ORTHO05D005864 2.1e-32 142.9 131 57.3
FAN08G1793 Fragaria x ananassa HOM05D005827 ORTHO05D005864 4.7e-32 141.7 132 57.6
Sabra09G0074600 Salix brachista HOM05D005827 ORTHO05D005864 4.7e-32 141.7 161 54.7
vmacro14445 Vaccinium macrocarpon HOM05D005827 ORTHO05D005864 4.7e-32 141.7 140 55.7
Sed0003004 Sechium edule HOM05D005827 ORTHO05D005864 1.0e-31 140.6 153 53.6
MSTRG.27741 Avicennia marina HOM05D005827 ORTHO05D005864 1.4e-31 140.2 156 51.3
FAN18G4374 Fragaria x ananassa HOM05D005827 ORTHO05D005864 1.8e-31 139.8 132 56.8
Lalb_Chr21g0308391 Lupinus albus HOM05D005827 ORTHO05D005864 1.8e-31 139.8 163 53.4
FAN13G0291 Fragaria x ananassa HOM05D005827 ORTHO05D005864 5.2e-31 138.3 132 56.1
FvH4_5g29540 Fragaria vesca HOM05D005827 ORTHO05D005864 8.9e-31 137.5 132 56.1
TAR625G0497 Trochodendron aralioides HOM05D005827 ORTHO05D005864 1.2e-30 137.1 140 52.9
TAR625G1254 Trochodendron aralioides HOM05D005827 ORTHO05D005864 1.2e-30 137.1 140 52.9
Glyma.12G113700 Glycine max HOM05D005827 ORTHO05D005864 4.4e-30 135.2 150 54.0
Nn1g04717 Nelumbo nucifera HOM05D005827 ORTHO05D005864 5.7e-30 134.8 132 56.1
PSO170G4182 Papaver somniferum HOM05D005827 ORTHO05D005864 5.7e-30 134.8 160 51.2
ClCG04G002790 Citrullus lanatus HOM05D005827 ORTHO05D005864 9.8e-30 134.0 143 54.5
GSVIVG01003168001 Vitis vinifera HOM05D005827 ORTHO05D005864 1.7e-29 133.3 134 55.2
Ca_30413_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 2.9e-29 132.5 165 52.7
PSO210G1068 Papaver somniferum HOM05D005827 ORTHO05D005864 2.9e-29 132.5 160 51.2
Phvul.007G038800 Phaseolus vulgaris HOM05D005827 ORTHO05D005864 4.9e-29 131.7 162 54.3
SalBow3G3341 Salvia bowleyana HOM05D005827 ORTHO05D005864 1.1e-28 130.6 169 50.3
Sc08g0001470 Simmondsia chinensis HOM05D005827 ORTHO05D005864 1.1e-28 130.6 136 55.9
EL10Ac9g22299 Beta vulgaris HOM05D005827 ORTHO05D005864 1.8e-28 129.8 138 54.3
CsaV3_4G029930 Cucumis sativus L. HOM05D005827 ORTHO05D005864 4.1e-28 128.6 139 50.4
ECA234G2840 Erigeron canadensis HOM05D005827 ORTHO05D005864 9.2e-28 127.5 134 53.7
AUR62010278 Chenopodium quinoa HOM05D005827 ORTHO05D005864 1.2e-27 127.1 136 52.9
Aqoxy5G03364 Aquilegia oxysepala HOM05D005827 ORTHO05D005864 2.0e-27 126.3 156 48.7
Eucgr.H03226 Eucalyptus grandis HOM05D005827 ORTHO05D005864 2.0e-27 126.3 134 53.0
Migut.N01172 Erythranthe guttata HOM05D005827 ORTHO05D005864 4.6e-27 125.2 137 48.2
MD08G1229200 Malus domestica HOM05D005827 ORTHO05D005864 4.6e-27 125.2 121 55.4
Lj9A321T79 Lonicera japonica HOM05D005827 ORTHO05D005864 2.3e-26 122.9 193 44.0
Ciclev10030223m.g Citrus clementina HOM05D005827 ORTHO05D005864 3.0e-26 122.5 115 60.0
arahy.Tifrunner.gnm1.ann1.M92LVR Arachis hypogaea HOM05D005827 ORTHO05D005864 5.0e-26 121.7 146 49.3
HPP92_026144 Vanilla planifolia HOM05D005827 ORTHO05D005864 6.6e-26 121.3 148 46.6
Os12g0244500 Oryza sativa ssp. japonica HOM05D005827 ORTHO05D005864 1.5e-25 120.2 119 58.0
TWI31G0230 Tripterygium wilfordii HOM05D005827 ORTHO05D005864 1.9e-25 119.8 133 53.4
Lsat_1_v5_gn_5_114720 Lactuca sativa HOM05D005827 ORTHO05D005864 9.5e-25 117.5 142 51.4
CDE01G0172 Ceratophyllum demersum HOM05D005827 ORTHO05D005864 1.2e-24 117.1 148 48.6
arahy.Tifrunner.gnm1.ann1.HL4A43 Arachis hypogaea HOM05D005827 ORTHO05D005864 2.8e-24 115.9 133 49.6
Ca_06388_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 3.6e-24 115.5 137 51.8
HanXRQChr16g0514881 Helianthus annuus HOM05D005827 ORTHO05D005864 6.2e-24 114.8 154 47.4
Zm00001eb133530 Zea mays HOM05D005827 ORTHO05D005864 6.2e-24 114.8 146 48.6
Glyma.20G127400 Glycine max HOM05D005827 ORTHO05D005864 8.0e-24 114.4 131 53.4
SGA_v2.0_scaffold42G16001 Striga asiatica HOM05D005827 ORTHO05D005864 8.9e-23 110.9 158 43.7
TAR381G1673 Trochodendron aralioides HOM05D005827 ORTHO05D005864 1.2e-22 110.5 134 50.0
MELO3C003274.2 Cucumis melo HOM05D005827 ORTHO05D005864 2.0e-22 109.8 121 50.4
Hund00127 Selenicereus undatus HOM05D005827 ORTHO05D005864 1.7e-21 106.7 101 57.4
SGA_v2.0_scaffold393G50707 Striga asiatica HOM05D005827 ORTHO05D005864 2.9e-21 105.9 151 43.0
Psat6g219720 Pisum sativum HOM05D005827 ORTHO05D005864 1.1e-20 104.0 172 44.2
Hund00128 Selenicereus undatus HOM05D005827 ORTHO05D005864 2.4e-20 102.8 114 51.8
Actinidia00415 Actinidia chinensis HOM05D005827 ORTHO05D005864 4.1e-20 102.1 120 53.3
Lj3g0023632 Lotus japonicus HOM05D005827 ORTHO05D005864 1.2e-19 100.5 107 56.1
Lj5g0000760 Lotus japonicus HOM05D005827 ORTHO05D005864 2.7e-19 99.4 107 54.2
unitig_94.g28296 Utricularia gibba HOM05D005827 ORTHO05D005864 2.7e-19 99.4 153 39.2
unitig_94.g28309 Utricularia gibba HOM05D005827 ORTHO05D005864 2.7e-19 99.4 153 39.2
TPR.G13876 Trifolium pratense HOM05D005827 ORTHO05D005864 2.3e-18 96.3 116 49.1
ATR0827G109 Amborella trichopoda HOM05D005827 ORTHO05D005864 9.5e-17 90.9 133 43.6
Nn2g12688 Nelumbo nucifera HOM05D005827 ORTHO05D005864 6.2e-16 88.2 94 57.4
MD05G1087800 Malus domestica HOM05D005827 ORTHO05D005864 1.1e-15 87.4 119 44.5
Medtr1g107495 Medicago truncatula HOM05D005827 ORTHO05D005864 1.4e-15 87.0 94 54.3
AUR62039111 Chenopodium quinoa HOM05D005827 ORTHO05D005864 3.1e-15 85.9 76 60.5
AUR62044681 Chenopodium quinoa HOM05D005827 ORTHO05D005864 1.2e-14 84.0 78 57.7
MELO3C033554.2 Cucumis melo HOM05D005827 ORTHO05D005864 2.6e-14 82.8 135 40.0
QL11p034007 Quercus lobata HOM05D005827 ORTHO05D005864 2.9e-13 79.3 75 48.0
CARHR144210 Cardamine hirsuta HOM05D005827 ORTHO05D005864 3.7e-13 79.0 52 84.6
Zm00001eb207600 Zea mays HOM05D005827 ORTHO05D005864 4.9e-13 78.6 105 44.8
ATR0691G195 Amborella trichopoda HOM05D005827 ORTHO05D005864 6.4e-13 78.2 81 46.9
Zm00001eb324360 Zea mays HOM05D005827 ORTHO05D005864 1.1e-12 77.4 91 51.6
CiPaw.07G088900 Carya illinoinensis HOM05D005827 ORTHO05D005864 1.4e-12 77.0 88 52.3
Zm00001eb006370 Zea mays HOM05D005827 ORTHO05D005864 2.4e-12 76.3 91 49.5
Zm00001eb350190 Zea mays HOM05D005827 ORTHO05D005864 2.4e-12 76.3 117 45.3
Zm00001eb259520 Zea mays HOM05D005827 ORTHO05D005864 9.2e-12 74.3 90 51.1
Zm00001eb324920 Zea mays HOM05D005827 ORTHO05D005864 2.7e-11 72.8 89 51.7
Zm00001eb091410 Zea mays HOM05D005827 ORTHO05D005864 1.3e-10 70.5 107 44.9
ClCG01G025500 Citrullus lanatus HOM05D005827 ORTHO05D005864 1.7e-10 70.1 144 38.9
SEGI_38856 Sequoiadendron giganteum HOM05D005827 ORTHO05D005864 5.1e-10 68.6 147 34.7
Mapoly0052s0016 Marchantia polymorpha HOM05D005827 ORTHO05D005864 6.6e-10 68.2 145 36.6
Pp3c21_2370 Physcomitrium patens HOM05D005827 ORTHO05D005864 6.6e-10 68.2 131 38.2
CANSAT25G3357 Cannabis sativa HOM05D005827 ORTHO05D005864 8.6e-10 67.8 54 53.7
SMO364G0308 Selaginella moellendorffii HOM05D005827 ORTHO05D000003 5.6e-09 65.1 119 34.5
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 3.6e-08 62.4 119 33.6
AagrBONN_evm.TU.Sc2ySwM_228.4380 Anthoceros agrestis HOM05D005827 ORTHO05D005864 2.0e-06 56.6 93 39.8
Cre06.g248800 Chlamydomonas reinhardtii HOM05D045397 ORTHO05D005864 2.0e-06 56.6 147 32.7


User provided reference genes

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