Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p32020 Brassica napus HOM05D007568 ORTHO05D009779 3.8e-142 508.1 238 100.0
BraA02t08213Z Brassica rapa HOM05D007568 ORTHO05D009779 3.8e-142 508.1 238 100.0
C03p18690 Brassica napus HOM05D007568 ORTHO05D009779 7.6e-135 483.8 238 95.0
BolC9t55448H Brassica oleracea HOM05D007568 ORTHO05D009779 1.9e-133 479.2 238 94.1
C09p27130 Brassica napus HOM05D007568 ORTHO05D009779 2.4e-133 478.8 238 93.7
BolC3t14260H Brassica oleracea HOM05D007568 ORTHO05D009779 2.1e-132 475.7 238 93.7
BcaC01g06154 Brassica carinata HOM05D007568 ORTHO05D009779 1.1e-128 463.4 240 90.8
BcaC02g08832 Brassica carinata HOM05D007568 ORTHO05D009779 1.6e-100 369.8 237 74.7
BcaNung01428 Brassica carinata HOM05D007568 ORTHO05D009779 4.0e-75 285.4 187 75.4
BcaB02g11011 Brassica carinata HOM05D007568 ORTHO05D009779 1.8e-72 276.6 224 58.5
A05p27540 Brassica napus HOM05D007568 ORTHO05D009779 9.5e-53 211.1 225 44.9
C02p26050 Brassica napus HOM05D007568 ORTHO05D009779 2.8e-52 209.5 225 44.4
A08p24970 Brassica napus HOM05D007568 ORTHO05D009779 4.7e-52 208.8 243 45.3
BolC4t25354H Brassica oleracea HOM05D007568 ORTHO05D009779 1.1e-51 207.6 225 44.4
A03p66230 Brassica napus HOM05D007568 ORTHO05D009779 2.6e-50 203.0 245 42.4
C02p26010 Brassica napus HOM05D007568 ORTHO05D009779 4.4e-50 202.2 205 47.8
BraA09t40709Z Brassica rapa HOM05D007568 ORTHO05D009779 1.7e-49 200.3 233 42.5
BcaC01g01043 Brassica carinata HOM05D007568 ORTHO05D009779 2.9e-49 199.5 229 46.7
BcaB07g31875 Brassica carinata HOM05D007568 ORTHO05D009779 1.9e-48 196.8 228 41.2
BcaB05g25263 Brassica carinata HOM05D007568 ORTHO05D009779 3.5e-47 192.6 228 40.8
BcaB04g18340 Brassica carinata HOM05D007568 ORTHO05D009779 4.7e-44 182.2 224 41.1
C01p17360 Brassica napus HOM05D007568 ORTHO05D009779 4.0e-43 179.1 230 37.0
C03p86040 Brassica napus HOM05D007568 ORTHO05D009779 7.5e-42 174.9 230 36.5
C07p00760 Brassica napus HOM05D007568 ORTHO05D009779 4.9e-41 172.2 236 35.2
BraA03t15678Z Brassica rapa HOM05D007568 ORTHO05D009779 4.9e-41 172.2 183 45.9
BcaB04g18026 Brassica carinata HOM05D007568 ORTHO05D009779 7.1e-40 168.3 180 46.7
BolC4t26648H Brassica oleracea HOM05D007568 ORTHO05D009779 4.3e-37 159.1 170 45.3
BolC4t24150H Brassica oleracea HOM05D000353 ORTHO05D000174 2.6e-34 149.8 144 49.3
BcaB08g34629 Brassica carinata HOM05D007568 ORTHO05D009779 8.4e-33 144.8 243 35.0
A07p36520 Brassica napus HOM05D007568 ORTHO05D009779 2.4e-32 143.3 216 36.1
BcaB05g24631 Brassica carinata HOM05D007568 ORTHO05D009779 3.5e-31 139.4 169 40.8
BcaC05g26582 Brassica carinata HOM05D007568 ORTHO05D009779 7.3e-29 131.7 170 40.0
BcaB04g20792 Brassica carinata HOM05D007568 ORTHO05D009779 3.6e-28 129.4 229 31.4
BolC8t47055H Brassica oleracea HOM05D007568 ORTHO05D009779 3.1e-27 126.3 61 95.1
C04p50500 Brassica napus HOM05D007568 ORTHO05D009779 4.0e-27 125.9 159 41.5
A03p65180 Brassica napus HOM05D007568 ORTHO05D009779 8.4e-25 118.2 110 51.8
C03p18140 Brassica napus HOM05D007568 ORTHO05D009779 8.4e-25 118.2 147 39.5
C09p36930 Brassica napus HOM05D007568 ORTHO05D009779 3.5e-23 112.8 151 34.4
BolC9t56523H Brassica oleracea HOM05D007568 ORTHO05D009779 3.5e-23 112.8 151 34.4
BolC7t45261H Brassica oleracea HOM05D007568 ORTHO05D009779 2.3e-22 110.2 149 34.9
BraA03t15576Z Brassica rapa HOM05D007568 ORTHO05D009779 8.7e-22 108.2 78 60.3
BcaC09g50463 Brassica carinata HOM05D007568 ORTHO05D009779 1.9e-21 107.1 149 34.2
C01p25160 Brassica napus HOM05D030822 ORTHO05D009779 1.9e-21 107.1 135 35.6
AL5G12730 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 7.3e-21 105.1 220 28.6
AL9U11480 Arabidopsis lyrata HOM05D000353 ORTHO05D011313 7.3e-21 105.1 230 28.7
BcaC01g00913 Brassica carinata HOM05D007568 ORTHO05D009779 1.3e-20 104.4 150 36.7
Sp6g07340 Schrenkiella parvula HOM05D000353 ORTHO05D000174 2.1e-20 103.6 230 27.4
BolC1t05940H Brassica oleracea HOM05D007568 ORTHO05D027567 1.1e-19 101.3 84 54.8
A04p34410 Brassica napus HOM05D007568 ORTHO05D009779 4.0e-19 99.4 135 33.3
A09p28960 Brassica napus HOM05D007568 ORTHO05D009779 5.3e-19 99.0 144 38.2
BraA09t38460Z Brassica rapa HOM05D007568 ORTHO05D009779 5.3e-19 99.0 144 38.2
C04p26530 Brassica napus HOM05D000353 ORTHO05D000174 6.9e-19 98.6 144 37.5
A01p06890 Brassica napus HOM05D007568 ORTHO05D009779 9.0e-19 98.2 228 28.1
A03p66080 Brassica napus HOM05D007568 ORTHO05D009779 9.0e-19 98.2 228 28.1
A05p17030 Brassica napus HOM05D007568 ORTHO05D009779 9.0e-19 98.2 228 28.1
BolC4t23333H Brassica oleracea HOM05D007568 ORTHO05D009779 1.2e-18 97.8 145 37.9
BolC4t23434H Brassica oleracea HOM05D007568 ORTHO05D009779 3.4e-18 96.3 78 56.4
BcaC09g50027 Brassica carinata HOM05D007568 ORTHO05D009779 4.5e-18 95.9 104 46.2
C03p85880 Brassica napus HOM05D007568 ORTHO05D009779 2.9e-17 93.2 151 37.1
BcaB01g01501 Brassica carinata HOM05D000353 ORTHO05D000174 6.4e-17 92.0 225 26.2
BolC8t51027H Brassica oleracea HOM05D007568 ORTHO05D009779 6.4e-17 92.0 233 27.5
BcaC09g47669 Brassica carinata HOM05D007568 ORTHO05D027567 8.4e-17 91.7 164 33.5
BolC5t32432H Brassica oleracea HOM05D000353 ORTHO05D000174 8.4e-17 91.7 232 25.0
C04p16590 Brassica napus HOM05D030822 ORTHO05D009779 1.4e-16 90.9 119 34.5
A03p68730 Brassica napus HOM05D000353 ORTHO05D000174 1.9e-16 90.5 232 27.2
BraA04t16943Z Brassica rapa HOM05D000353 ORTHO05D000174 1.9e-16 90.5 232 27.2
Thhalv10027364m.g Eutrema salsugineum HOM05D000353 ORTHO05D000174 1.9e-16 90.5 253 27.3
A05p24020 Brassica napus HOM05D000353 ORTHO05D000174 2.4e-16 90.1 231 26.8
C04p22790 Brassica napus HOM05D007568 ORTHO05D027567 3.2e-16 89.7 83 51.8
Thhalv10000133m.g Eutrema salsugineum HOM05D000353 ORTHO05D000174 7.1e-16 88.6 247 26.7
BolC9t57836H Brassica oleracea HOM05D000353 ORTHO05D000174 9.3e-16 88.2 232 26.3
BolC2t09295H Brassica oleracea HOM05D007568 ORTHO05D009779 1.2e-15 87.8 105 41.9
BraA09t40707Z Brassica rapa HOM05D000353 ORTHO05D000174 1.2e-15 87.8 238 26.9
Carub.0007s3602 Capsella rubella HOM05D000353 ORTHO05D000174 1.2e-15 87.8 232 25.9
AT1G52950 Arabidopsis thaliana HOM05D000353 ORTHO05D000174 2.1e-15 87.0 235 23.4
A03p66100 Brassica napus HOM05D000353 ORTHO05D000174 2.1e-15 87.0 238 26.9
A04p07180 Brassica napus HOM05D000353 ORTHO05D000174 4.6e-15 85.9 231 26.0
A07p12890 Brassica napus HOM05D000353 ORTHO05D000174 4.6e-15 85.9 231 26.0
BolC1t02998H Brassica oleracea HOM05D000353 ORTHO05D000174 4.6e-15 85.9 232 26.3
AL2G19900 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 7.9e-15 85.1 229 25.3
AL2G22230 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 7.9e-15 85.1 229 25.3
AL6G41900 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 7.9e-15 85.1 229 25.3
AL7G11630 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 1.0e-14 84.7 230 26.1
BcaB03g16823 Brassica carinata HOM05D000353 ORTHO05D000174 1.0e-14 84.7 236 25.4
C01p30610 Brassica napus HOM05D000353 ORTHO05D000174 1.3e-14 84.3 236 26.3
C05p49080 Brassica napus HOM05D000353 ORTHO05D000174 1.3e-14 84.3 237 27.8
Carub.0149s0001 Capsella rubella HOM05D011333 ORTHO05D011313 1.3e-14 84.3 241 24.5
BcaB08g34681 Brassica carinata HOM05D009963 ORTHO05D009779 1.8e-14 84.0 110 36.4
AL4G20700 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 2.3e-14 83.6 229 25.3
C06p20120 Brassica napus HOM05D007568 ORTHO05D009779 3.0e-14 83.2 151 31.1
BraA09t38700Z Brassica rapa HOM05D000353 ORTHO05D000174 3.9e-14 82.8 241 25.3
Carub.0002s1156 Capsella rubella HOM05D011333 ORTHO05D011313 5.1e-14 82.4 247 23.9
BraA08t33914Z Brassica rapa HOM05D000353 ORTHO05D000174 6.7e-14 82.0 231 26.0
Carub.0003s3392 Capsella rubella HOM05D000353 ORTHO05D000174 1.1e-13 81.3 229 22.3
BolC2t10349H Brassica oleracea HOM05D007568 ORTHO05D009779 1.5e-13 80.9 211 26.1
BraA09t38076Z Brassica rapa HOM05D000353 ORTHO05D000174 1.5e-13 80.9 241 25.3
AL5G12720 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 2.5e-13 80.1 234 21.4
AL6G41910 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 2.5e-13 80.1 234 21.4
C01p31900 Brassica napus HOM05D000353 ORTHO05D000174 3.3e-13 79.7 239 23.4
BraA02t07226Z Brassica rapa HOM05D000353 ORTHO05D000174 3.3e-13 79.7 230 23.5
AL2G19910 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 5.6e-13 79.0 234 21.4
AL2G22240 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 5.6e-13 79.0 237 21.5
BolC6t36043H Brassica oleracea HOM05D007568 ORTHO05D009779 7.4e-13 78.6 98 37.8
BolC8t47824H Brassica oleracea HOM05D000353 ORTHO05D000174 1.3e-12 77.8 172 26.2
C08p32530 Brassica napus HOM05D000353 ORTHO05D000174 1.6e-12 77.4 239 23.0
Carub.0007s3609 Capsella rubella HOM05D011333 ORTHO05D011313 1.6e-12 77.4 244 24.6
BcaB04g17762 Brassica carinata HOM05D000353 ORTHO05D000174 2.1e-12 77.0 226 22.1
BcaB06g28316 Brassica carinata HOM05D000353 ORTHO05D000174 2.1e-12 77.0 222 24.8
A07p20380 Brassica napus HOM05D007568 ORTHO05D009779 2.1e-12 77.0 97 38.1
AL9U11490 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 4.8e-12 75.9 234 20.9
A10p31040 Brassica napus HOM05D000353 ORTHO05D000174 4.8e-12 75.9 240 25.4
BraSC39t46217Z Brassica rapa HOM05D000353 ORTHO05D000174 4.8e-12 75.9 214 22.0
C04p16570 Brassica napus HOM05D000353 ORTHO05D000174 1.8e-11 73.9 240 25.4
C05p33950 Brassica napus HOM05D000353 ORTHO05D000174 1.8e-11 73.9 240 25.4
BolC2t08345H Brassica oleracea HOM05D000353 ORTHO05D000174 1.8e-11 73.9 240 25.4
BolC7t45258H Brassica oleracea HOM05D000353 ORTHO05D000174 1.8e-11 73.9 240 25.4
BcaB06g27257 Brassica carinata HOM05D000353 ORTHO05D000174 2.4e-11 73.6 227 22.0
BcaC01g02309 Brassica carinata HOM05D007568 ORTHO05D009779 2.4e-11 73.6 90 41.1
BcaNung06627 Brassica carinata HOM05D007568 ORTHO05D009779 3.1e-11 73.2 67 47.8
BcaB05g23080 Brassica carinata HOM05D009963 ORTHO05D013780 4.0e-11 72.8 110 36.4
Carub.0004s0702 Capsella rubella HOM05D000353 ORTHO05D000174 4.0e-11 72.8 228 22.8
A05p18670 Brassica napus HOM05D007568 ORTHO05D009779 5.3e-11 72.4 72 47.2
Carub.0007s3603 Capsella rubella HOM05D000353 ORTHO05D011313 6.9e-11 72.0 238 22.7
BcaC05g28066 Brassica carinata HOM05D000353 ORTHO05D000174 9.0e-11 71.6 243 22.6
C05p40800 Brassica napus HOM05D000353 ORTHO05D000174 9.0e-11 71.6 243 22.6
AL1G50720 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 1.2e-10 71.2 203 24.6
BcaC01g02319 Brassica carinata HOM05D007568 ORTHO05D009779 1.5e-10 70.9 134 33.6
C02p26060 Brassica napus HOM05D000353 ORTHO05D000174 1.5e-10 70.9 234 23.5
BolC2t09294H Brassica oleracea HOM05D007568 ORTHO05D009779 1.5e-10 70.9 72 47.2
BolC3t16020H Brassica oleracea HOM05D000353 ORTHO05D000174 1.5e-10 70.9 230 22.6
AL3G51050 Arabidopsis lyrata HOM05D007965 ORTHO05D023618 2.0e-10 70.5 196 20.9
AL5G12680 Arabidopsis lyrata HOM05D007965 ORTHO05D023618 2.0e-10 70.5 196 20.9
AL8G17270 Arabidopsis lyrata HOM05D007965 ORTHO05D023618 2.0e-10 70.5 196 20.9
Carub.0016s0007 Capsella rubella HOM05D000353 ORTHO05D000174 2.0e-10 70.5 200 23.0
Carub.0076s0001 Capsella rubella HOM05D000353 ORTHO05D000174 2.0e-10 70.5 228 22.4
C09p45610 Brassica napus HOM05D000353 ORTHO05D000174 2.6e-10 70.1 240 25.8
BolC8t50060H Brassica oleracea HOM05D007568 ORTHO05D009779 2.6e-10 70.1 135 28.1
Carub.0005s0849 Capsella rubella HOM05D007965 ORTHO05D023618 3.4e-10 69.7 189 24.3
A05p27520 Brassica napus HOM05D000353 ORTHO05D000174 4.5e-10 69.3 234 23.1
AL8G21940 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 1.0e-09 68.2 203 24.1
BcaB05g23783 Brassica carinata HOM05D000353 ORTHO05D000174 1.0e-09 68.2 227 19.4
C02p53420 Brassica napus HOM05D000353 ORTHO05D000174 1.0e-09 68.2 230 20.9
C04p31750 Brassica napus HOM05D000353 ORTHO05D000174 1.0e-09 68.2 230 27.0
C09p42930 Brassica napus HOM05D000353 ORTHO05D000174 1.0e-09 68.2 140 26.4
BolC4t24724H Brassica oleracea HOM05D000353 ORTHO05D000174 1.0e-09 68.2 230 27.0
BolC5t34087H Brassica oleracea HOM05D007568 ORTHO05D009779 1.0e-09 68.2 58 50.0
BolC9t57163H Brassica oleracea HOM05D000353 ORTHO05D000174 1.0e-09 68.2 140 26.4
BcaC07g40033 Brassica carinata HOM05D000353 ORTHO05D000174 1.3e-09 67.8 198 21.7
C04p17840 Brassica napus HOM05D007568 ORTHO05D014500 1.3e-09 67.8 114 36.0
BcaB02g11540 Brassica carinata HOM05D011625 ORTHO05D013783 1.7e-09 67.4 149 27.5
BolC2t10477H Brassica oleracea HOM05D000353 ORTHO05D000174 1.7e-09 67.4 186 26.3
BolC8t50650H Brassica oleracea HOM05D000353 ORTHO05D000174 2.9e-09 66.6 234 25.6
BraA08t34238Z Brassica rapa HOM05D000353 ORTHO05D000174 2.9e-09 66.6 155 27.1
Carub.0016s0013 Capsella rubella HOM05D000353 ORTHO05D000174 2.9e-09 66.6 232 23.3
A07p20350 Brassica napus HOM05D000353 ORTHO05D000174 3.8e-09 66.2 228 21.5
A03p30400 Brassica napus HOM05D000353 ORTHO05D000174 4.9e-09 65.9 228 21.5
BolC7t41571H Brassica oleracea HOM05D000353 ORTHO05D000174 4.9e-09 65.9 167 24.6
AL8G20950 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 6.4e-09 65.5 212 22.2
C03p28750 Brassica napus HOM05D007568 ORTHO05D041881 6.4e-09 65.5 70 37.1
C07p13750 Brassica napus HOM05D000353 ORTHO05D000174 6.4e-09 65.5 226 27.0
BolC3t15795H Brassica oleracea HOM05D007568 ORTHO05D041881 6.4e-09 65.5 70 37.1
A03p30410 Brassica napus HOM05D000353 ORTHO05D000174 8.4e-09 65.1 228 21.5
C02p49720 Brassica napus HOM05D000353 ORTHO05D000174 8.4e-09 65.1 174 24.7
Carub.0001s3686 Capsella rubella HOM05D012762 ORTHO05D011313 8.4e-09 65.1 249 22.1
AL9U11500 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 1.1e-08 64.7 142 26.8
BcaC02g09404 Brassica carinata HOM05D007568 ORTHO05D009779 1.1e-08 64.7 58 50.0
AL2G19920 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 1.4e-08 64.3 142 26.8
AL2G22250 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 1.4e-08 64.3 142 26.8
A06p43450 Brassica napus HOM05D000353 ORTHO05D000174 1.4e-08 64.3 207 25.6
BcaC06g33059 Brassica carinata HOM05D000353 ORTHO05D000174 1.9e-08 63.9 225 25.3
BcaC09g51435 Brassica carinata HOM05D000353 ORTHO05D000174 1.9e-08 63.9 228 21.5
BolC1t01288H Brassica oleracea HOM05D000353 ORTHO05D000174 1.9e-08 63.9 228 21.5
AL5G11810 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 2.5e-08 63.5 194 21.1
AL5G12710 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 2.5e-08 63.5 142 26.1
BraA06t27230Z Brassica rapa HOM05D000353 ORTHO05D000174 2.5e-08 63.5 173 27.7
Carub.0003s2757 Capsella rubella HOM05D011333 ORTHO05D011313 2.5e-08 63.5 234 22.2
BcaB07g30022 Brassica carinata HOM05D007568 ORTHO05D009779 7.1e-08 62.0 136 28.7
TPR.G15973 Trifolium pratense HOM05D001685 ORTHO05D007488 9.3e-08 61.6 199 26.1
AL8G21920 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 1.2e-07 61.2 142 26.1
C01p49430 Brassica napus HOM05D007568 ORTHO05D009779 1.2e-07 61.2 58 46.6
Carub.0025s0004 Capsella rubella HOM05D000353 ORTHO05D000174 1.2e-07 61.2 175 25.7
BcaB07g32743 Brassica carinata HOM05D000353 ORTHO05D000174 2.1e-07 60.5 155 23.9
BcaC05g27705 Brassica carinata HOM05D000353 ORTHO05D000174 2.1e-07 60.5 120 29.2
AL6G41920 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 3.5e-07 59.7 160 25.6
AL4G20710 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 4.6e-07 59.3 159 23.9
BolC9t53770H Brassica oleracea HOM05D000353 ORTHO05D000174 4.6e-07 59.3 169 21.9
C03p19550 Brassica napus HOM05D007568 ORTHO05D009779 7.9e-07 58.5 77 33.8
AL7G11640 Arabidopsis lyrata HOM05D000353 ORTHO05D010269 1.0e-06 58.2 126 26.2
Carub.0025s0005 Capsella rubella HOM05D000353 ORTHO05D021412 1.0e-06 58.2 143 23.8
A03p30420 Brassica napus HOM05D007568 ORTHO05D009779 1.8e-06 57.4 66 33.3
Carub.0001s3690 Capsella rubella HOM05D000353 ORTHO05D021412 2.3e-06 57.0 138 23.9
Carub.0001s3421 Capsella rubella HOM05D012762 ORTHO05D011313 3.9e-06 56.2 245 21.2
BcaC05g29145 Brassica carinata HOM05D000353 ORTHO05D000174 5.1e-06 55.8 130 24.6
C06p37800 Brassica napus HOM05D000096 ORTHO05D000174 5.1e-06 55.8 121 24.8
BolC6t38882H Brassica oleracea HOM05D000353 ORTHO05D032358 5.1e-06 55.8 121 24.8
Carub.0005s0866 Capsella rubella HOM05D012762 ORTHO05D011313 5.1e-06 55.8 138 23.2
AL1G55600 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 6.7e-06 55.5 128 25.8
BolC4t23854H Brassica oleracea HOM05D000353 ORTHO05D000174 6.7e-06 55.5 147 25.2
BolC4t23392H Brassica oleracea HOM05D007568 ORTHO05D009779 8.7e-06 55.1 37 59.5


User provided reference genes

Program Settings