Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 2.0e-192 675.6 354 100.0
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 2.0e-192 675.6 354 100.0
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 8.0e-189 663.7 354 98.3
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 2.3e-188 662.1 354 98.0
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 5.7e-187 657.5 354 98.0
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 1.6e-184 649.4 354 96.6
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 7.0e-177 624.0 356 92.1
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 1.2e-176 623.2 354 92.9
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 1.6e-176 622.9 354 93.5
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 6.1e-173 610.9 354 91.2
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 1.3e-170 603.2 354 92.4
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 1.7e-170 602.8 354 90.1
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 7.8e-168 594.0 332 93.7
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 2.1e-165 585.9 364 85.4
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 5.6e-158 561.2 354 83.9
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 6.6e-151 537.7 345 81.2
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 2.8e-149 532.3 337 81.3
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 3.1e-148 528.9 337 81.0
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 3.4e-147 525.4 350 78.3
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 9.9e-147 523.9 353 77.9
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 3.7e-146 521.9 315 84.1
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 4.9e-146 521.5 353 76.5
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 6.4e-146 521.2 355 76.1
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 8.3e-146 520.8 355 76.3
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 1.1e-145 520.4 354 78.0
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 1.1e-145 520.4 355 76.3
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 1.1e-145 520.4 354 75.7
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 1.4e-145 520.0 342 78.1
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 1.4e-145 520.0 353 76.5
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 7.1e-145 517.7 337 78.6
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 7.1e-145 517.7 339 78.5
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 1.2e-144 516.9 329 79.6
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 1.2e-144 516.9 339 79.1
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 1.6e-144 516.5 353 76.5
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 2.7e-144 515.8 337 78.3
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 3.5e-144 515.4 338 79.9
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 6.0e-144 514.6 355 77.2
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 1.3e-143 513.5 337 77.7
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 1.7e-143 513.1 337 78.0
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 1.7e-143 513.1 354 76.6
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 2.3e-143 512.7 353 77.1
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 5.1e-143 511.5 342 77.2
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 6.6e-143 511.1 337 78.9
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 8.6e-143 510.8 337 78.9
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 1.5e-142 510.0 336 78.9
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 1.9e-142 509.6 339 78.5
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 2.5e-142 509.2 316 82.6
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 5.6e-142 508.1 347 77.2
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 7.3e-142 507.7 343 78.1
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 9.5e-142 507.3 355 74.9
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 1.2e-141 506.9 354 76.0
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 1.6e-141 506.5 329 79.0
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 8.1e-141 504.2 337 78.9
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 1.1e-140 503.8 406 68.7
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 2.4e-140 502.7 337 77.4
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 3.1e-140 502.3 337 78.3
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 5.2e-140 501.5 350 76.0
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 8.9e-140 500.7 337 77.4
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 1.5e-139 500.0 337 77.4
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 2.6e-139 499.2 371 72.0
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 3.4e-139 498.8 316 80.7
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 5.8e-139 498.0 359 74.7
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 5.8e-139 498.0 337 76.0
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 9.9e-139 497.3 337 75.7
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 1.3e-138 496.9 338 77.5
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 2.2e-138 496.1 337 75.4
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 2.9e-138 495.7 358 74.3
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 3.8e-138 495.4 313 80.8
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 4.9e-138 495.0 346 74.9
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 1.4e-137 493.4 358 73.5
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 5.4e-137 491.5 316 78.5
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.2e-136 490.3 359 73.8
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 6.0e-136 488.0 311 79.7
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.7e-135 486.5 377 70.6
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 1.9e-134 483.0 311 78.5
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 4.3e-134 481.9 313 77.3
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 2.1e-133 479.6 311 78.5
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 4.0e-132 475.3 313 76.0
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 1.9e-129 466.5 355 70.7
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 3.2e-129 465.7 353 70.5
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 9.3e-129 464.2 317 73.5
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 2.3e-127 459.5 321 73.8
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 2.3e-127 459.5 353 71.4
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 6.6e-127 458.0 289 81.7
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 6.6e-127 458.0 305 78.0
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 1.1e-126 457.2 321 73.8
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 1.6e-125 453.4 307 76.5
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 4.8e-125 451.8 308 77.6
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 6.2e-125 451.4 314 73.2
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 2.2e-122 443.0 329 71.7
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 1.6e-120 436.8 351 68.1
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 9.6e-118 427.6 302 73.5
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.6e-117 426.8 404 61.6
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 2.8e-117 426.0 318 68.6
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 7.6e-115 417.9 313 70.3
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 1.3e-114 417.2 294 74.5
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 1.1e-113 414.1 314 66.9
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 5.5e-113 411.8 353 65.2
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 1.3e-111 407.1 337 65.6
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 8.7e-111 404.4 346 64.7
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 2.1e-109 399.8 336 64.3
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 2.5e-105 386.3 242 81.8
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 8.7e-103 377.9 255 75.3
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 4.5e-91 339.0 216 77.8
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 4.5e-91 339.0 221 78.7
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 1.2e-88 330.9 303 58.4
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 7.7e-83 311.6 230 68.3
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 2.5e-81 306.6 312 54.2
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 4.2e-81 305.8 308 54.5
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 7.0e-76 288.5 192 76.0
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 2.6e-75 286.6 187 78.1
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 1.2e-72 277.7 220 66.8
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 2.4e-68 263.5 236 61.9
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 2.7e-64 250.0 337 47.5
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 5.2e-63 245.7 166 76.5
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 3.6e-56 223.0 243 58.4
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 3.6e-56 223.0 284 46.8
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 8.9e-55 218.4 151 73.5
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 8.6e-50 201.8 160 66.2
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 3.1e-47 193.4 149 65.1
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 4.3e-41 172.9 150 58.0
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 6.8e-39 165.6 280 36.1
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 1.9e-36 157.5 109 67.0
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 3.2e-36 156.8 266 41.0
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 1.6e-35 154.5 122 65.6
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 6.2e-32 142.5 261 38.3
Oeu045874.1 Olea europaea HOM05D005313 ORTHO05D006317 3.4e-30 136.7 145 57.2
COL.COLO4_10085 Corchorus olitorius HOM05D005313 ORTHO05D006317 2.4e-28 130.6 85 71.8
TPR.G36891 Trifolium pratense HOM05D005313 ORTHO05D006317 9.2e-28 128.6 101 70.3
Glyma.07G165500 Glycine max HOM05D005313 ORTHO05D006317 3.1e-23 113.6 106 59.4
TPR.G36912 Trifolium pratense HOM05D005313 ORTHO05D006317 4.9e-21 106.3 76 69.7
Aa31LG11G8280 Aethionema arabicum HOM05D005313 ORTHO05D006317 9.2e-20 102.1 60 81.7
Aa31LG11G8270 Aethionema arabicum HOM05D005313 ORTHO05D006317 1.3e-18 98.2 88 64.8
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 2.3e-18 97.4 108 53.7
BcaC06g31315 Brassica carinata HOM05D005313 ORTHO05D006317 1.5e-17 94.7 55 85.5
MBI06_g07791_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.3e-17 93.6 56 87.5
COL.COLO4_10084 Corchorus olitorius HOM05D005313 ORTHO05D006317 9.6e-17 92.0 53 81.1
CAN.G1020.2 Capsicum annuum HOM05D005313 ORTHO05D006317 1.2e-16 91.7 113 47.8
CsaV3_UNG236470 Cucumis sativus L. HOM05D005313 ORTHO05D006317 2.0e-14 84.3 60 71.7
AagrBONN_evm.TU.Sc2ySwM_117.3801 Anthoceros agrestis HOM05D005313 ORTHO05D006317 3.0e-10 70.5 64 56.2
Actinidia01955 Actinidia chinensis HOM05D005313 ORTHO05D006317 5.1e-10 69.7 43 74.4
DCAR_023607 Daucus carota HOM05D005313 ORTHO05D006317 9.0e-07 58.9 68 54.4


User provided reference genes

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