Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 3.1e-125 451.8 233 100.0
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 3.5e-124 448.4 233 99.1
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 1.6e-113 412.9 238 90.8
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 1.6e-113 412.9 238 90.8
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 5.6e-106 387.9 228 84.6
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 7.3e-106 387.5 226 85.8
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 7.3e-106 387.5 226 85.8
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 3.6e-105 385.2 228 84.6
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 6.1e-105 384.4 226 85.0
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 6.1e-105 384.4 226 85.0
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 8.0e-105 384.0 224 85.3
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 1.4e-104 383.3 224 86.6
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 1.8e-104 382.9 226 85.4
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 5.7e-103 377.9 225 84.0
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 7.5e-103 377.5 225 83.6
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 4.1e-101 371.7 228 81.6
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 7.5e-95 350.9 228 78.1
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 1.9e-90 336.3 217 82.5
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 3.5e-84 315.5 223 71.3
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 6.6e-83 311.2 223 69.5
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 1.5e-82 310.1 223 70.4
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 3.3e-82 308.9 223 69.5
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 3.3e-82 308.9 223 69.5
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 3.3e-82 308.9 224 70.5
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 3.3e-82 308.9 224 70.5
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 9.5e-82 307.4 224 70.1
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 9.5e-82 307.4 224 70.1
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 9.5e-82 307.4 224 70.1
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 9.5e-82 307.4 222 67.1
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 4.0e-80 302.0 223 68.2
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 4.9e-78 295.0 217 67.7
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 3.5e-76 288.9 217 62.7
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 3.0e-75 285.8 228 60.1
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 3.9e-75 285.4 225 61.3
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 2.5e-74 282.7 227 62.6
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 7.3e-74 281.2 222 60.8
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 7.3e-74 281.2 217 61.3
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 9.6e-74 280.8 217 62.2
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 9.6e-74 280.8 227 62.1
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 1.2e-73 280.4 217 62.2
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 1.6e-73 280.0 217 61.3
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 2.1e-73 279.6 217 61.3
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 2.8e-73 279.3 222 60.4
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 6.2e-73 278.1 230 59.1
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 8.1e-73 277.7 222 61.7
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 8.1e-73 277.7 218 61.9
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 1.1e-72 277.3 218 61.5
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 1.8e-72 276.6 216 62.0
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 2.4e-72 276.2 222 59.9
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 2.4e-72 276.2 234 58.5
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 3.1e-72 275.8 229 57.6
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 3.1e-72 275.8 231 58.4
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 1.2e-71 273.9 227 58.6
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 2.0e-71 273.1 228 58.8
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 2.0e-71 273.1 222 58.6
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 3.4e-71 272.3 230 57.4
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 3.4e-71 272.3 224 57.6
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 3.4e-71 272.3 221 58.4
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 3.4e-71 272.3 220 60.0
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 7.6e-71 271.2 220 60.0
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 7.6e-71 271.2 195 68.2
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 7.6e-71 271.2 218 60.6
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 7.6e-71 271.2 216 61.1
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 9.9e-71 270.8 227 56.4
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 9.9e-71 270.8 222 58.6
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 1.3e-70 270.4 230 57.8
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 1.3e-70 270.4 214 63.1
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 1.7e-70 270.0 224 58.0
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 2.2e-70 269.6 223 59.2
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 2.2e-70 269.6 223 59.2
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 2.2e-70 269.6 216 58.3
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 2.2e-70 269.6 222 58.1
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 3.8e-70 268.9 217 60.8
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 3.8e-70 268.9 222 61.7
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 3.8e-70 268.9 217 57.1
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 3.8e-70 268.9 223 59.2
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 1.1e-69 267.3 217 58.5
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.4e-69 266.9 217 60.4
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.4e-69 266.9 217 60.4
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 1.9e-69 266.5 223 58.3
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 1.9e-69 266.5 222 58.6
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 4.2e-69 265.4 216 57.9
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 7.1e-69 264.6 221 57.9
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 7.1e-69 264.6 217 56.7
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 9.3e-69 264.2 215 58.6
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 1.2e-68 263.8 217 59.4
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 1.2e-68 263.8 228 56.1
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 1.6e-68 263.5 229 57.6
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 6.0e-68 261.5 225 56.9
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 6.0e-68 261.5 223 58.3
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 7.8e-68 261.2 217 56.2
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 1.3e-67 260.4 222 58.1
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 1.3e-67 260.4 224 57.1
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 1.7e-67 260.0 224 57.1
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 1.7e-67 260.0 227 55.9
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 1.7e-67 260.0 221 57.9
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 5.1e-67 258.5 220 57.3
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 5.1e-67 258.5 225 57.8
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 6.6e-67 258.1 217 58.1
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 1.1e-66 257.3 226 56.2
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 1.5e-66 256.9 223 57.0
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 2.1e-65 253.1 218 54.1
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 3.6e-65 252.3 247 52.2
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 4.8e-65 251.9 224 55.8
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 1.4e-64 250.4 180 73.3
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 1.4e-64 250.4 215 58.1
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 1.8e-64 250.0 195 63.1
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 2.4e-64 249.6 221 54.8
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 9.0e-64 247.7 217 53.0
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 2.0e-63 246.5 216 59.7
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 2.0e-63 246.5 216 59.7
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 5.8e-63 245.0 187 61.5
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 9.9e-63 244.2 249 51.4
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 2.9e-62 242.7 192 59.4
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 4.9e-62 241.9 243 52.3
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 4.9e-62 241.9 217 54.4
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 1.9e-61 240.0 200 58.5
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 4.6e-60 235.3 281 47.3
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 7.9e-60 234.6 225 54.7
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 3.9e-59 232.3 215 53.0
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 1.9e-58 229.9 223 53.4
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 3.7e-57 225.7 193 53.4
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 6.2e-57 224.9 211 54.5
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 5.8e-55 218.4 214 50.0
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 1.1e-53 214.2 188 52.7
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 1.9e-53 213.4 212 50.0
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 4.2e-53 212.2 182 56.6
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 3.9e-51 205.7 217 47.0
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 3.3e-50 202.6 148 64.2
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 1.1e-48 197.6 190 50.5
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 5.8e-47 191.8 217 44.2
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 1.7e-46 190.3 157 56.1
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 2.2e-46 189.9 148 60.1
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 3.2e-45 186.0 161 55.3
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 1.6e-44 183.7 207 45.9
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 7.4e-42 174.9 210 43.3
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 2.8e-41 172.9 236 42.4
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 2.8e-41 172.9 159 50.3
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 1.1e-40 171.0 177 49.7
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 2.6e-39 166.4 210 42.9
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.9e-38 162.9 219 41.6
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 4.6e-36 155.6 210 41.4
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 9.1e-32 141.4 217 41.0
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 2.2e-30 136.7 123 56.9
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 1.4e-29 134.0 112 59.8
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 4.2e-29 132.5 178 39.3
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 8.8e-27 124.8 127 51.2
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 1.1e-26 124.4 118 50.0
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 2.0e-26 123.6 118 52.5
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 1.3e-25 120.9 86 65.1
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 2.0e-23 113.6 211 36.0
CARHR263530 Cardamine hirsuta HOM05D004555 ORTHO05D005305 1.0e-22 111.3 69 79.7
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 9.4e-21 104.8 156 37.2
QL02p009653 Quercus lobata HOM05D004555 ORTHO05D005305 1.8e-16 90.5 61 70.5
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 4.1e-16 89.4 151 36.4
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 4.1e-16 89.4 151 36.4
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 6.5e-14 82.0 74 58.1
PGR031G0233 Punica granatum HOM05D004555 ORTHO05D005305 2.8e-09 66.6 70 42.9
Hund17190 Selenicereus undatus HOM05D004555 ORTHO05D005305 1.3e-06 57.8 76 39.5


User provided reference genes

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