Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p31660 Brassica napus HOM05D005305 ORTHO05D006394 4.0e-129 464.9 260 100.0
BolC2t10994H Brassica oleracea HOM05D005305 ORTHO05D006394 3.7e-119 431.8 260 91.9
BraA02t08169Z Brassica rapa HOM05D005305 ORTHO05D006394 2.3e-113 412.5 261 90.8
Sp2g12560 Schrenkiella parvula HOM05D005305 ORTHO05D006394 4.5e-96 355.1 257 75.9
C02p49000 Brassica napus HOM05D005305 ORTHO05D006394 2.9e-87 325.9 188 94.7
Thhalv10009974m.g Eutrema salsugineum HOM05D005305 ORTHO05D006394 1.9e-62 243.4 242 59.1
BolC5t30066H Brassica oleracea HOM05D005305 ORTHO05D006394 5.5e-62 241.9 254 55.9
BcaB02g06584 Brassica carinata HOM05D005305 ORTHO05D006394 6.1e-61 238.4 253 56.5
A06p11170 Brassica napus HOM05D005305 ORTHO05D006394 5.1e-60 235.3 254 55.9
Sp1g13500 Schrenkiella parvula HOM05D005305 ORTHO05D006394 8.8e-60 234.6 246 56.5
BcaC05g25447 Brassica carinata HOM05D005305 ORTHO05D006394 3.3e-59 232.6 254 55.1
C05p13290 Brassica napus HOM05D005305 ORTHO05D006394 3.3e-59 232.6 254 55.1
AL1G27270 Arabidopsis lyrata HOM05D005305 ORTHO05D006394 1.3e-58 230.7 243 57.2
AT1G15190 Arabidopsis thaliana HOM05D005305 ORTHO05D006394 4.8e-58 228.8 245 55.9
Aa31LG2G8790 Aethionema arabicum HOM05D005305 ORTHO05D006394 1.1e-57 227.6 182 69.8
CARHR015700 Cardamine hirsuta HOM05D005305 ORTHO05D006394 1.4e-57 227.3 235 57.4
BraA06t24297Z Brassica rapa HOM05D005305 ORTHO05D006394 4.1e-57 225.7 254 53.9
BcaC07g38772 Brassica carinata HOM05D005305 ORTHO05D006394 4.5e-56 222.2 269 54.3
C08p17050 Brassica napus HOM05D005305 ORTHO05D006394 4.5e-56 222.2 269 54.3
BolC8t49330H Brassica oleracea HOM05D005305 ORTHO05D006394 4.5e-56 222.2 269 54.3
BcaB03g13072 Brassica carinata HOM05D005305 ORTHO05D006394 1.7e-55 220.3 270 53.0
A08p31700 Brassica napus HOM05D005305 ORTHO05D006394 5.0e-55 218.8 267 52.4
Carub.0001s1494 Capsella rubella HOM05D005305 ORTHO05D006394 1.0e-52 211.1 151 74.2
BraA08t35092Z Brassica rapa HOM05D005305 ORTHO05D006394 9.1e-49 198.0 191 61.8
Actinidia33832 Actinidia chinensis HOM05D005305 ORTHO05D006394 7.2e-30 135.2 175 46.9
Ciclev10001162m.g Citrus clementina HOM05D005305 ORTHO05D006394 2.8e-29 133.3 267 36.3
Atru.chr6.974 Acer truncatum HOM05D005305 ORTHO05D006394 1.8e-28 130.6 193 45.6
Sed0001621 Sechium edule HOM05D005305 ORTHO05D006394 5.2e-28 129.0 253 35.6
Lj6g0020123 Lotus japonicus HOM05D005305 ORTHO05D006394 5.7e-27 125.6 238 40.3
CSS0043111 Camellia sinensis var. sinensis HOM05D005305 ORTHO05D006394 9.8e-27 124.8 158 46.2
Oeu000200.2 Olea europaea HOM05D005305 ORTHO05D006394 1.8e-25 120.6 239 37.7
C03p81290 Brassica napus HOM05D000250 ORTHO05D015314 3.1e-25 119.8 134 56.0
CsaV3_6G037300 Cucumis sativus L. HOM05D005305 ORTHO05D006394 4.1e-25 119.4 179 40.2
MELO3C014385.2 Cucumis melo HOM05D005305 ORTHO05D006394 1.2e-24 117.9 163 42.9
Phvul.006G211300 Phaseolus vulgaris HOM05D005305 ORTHO05D006394 1.6e-24 117.5 237 36.3
Ca_00097_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 4.5e-24 115.9 168 42.9
Ca_29935_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 4.5e-24 115.9 168 42.9
Dinv19341 Davidia involucrata HOM05D005305 ORTHO05D006394 7.8e-24 115.2 163 44.8
Psat1g219600 Pisum sativum HOM05D005305 ORTHO05D006394 7.8e-24 115.2 164 44.5
Aqoxy6G00392 Aquilegia oxysepala HOM05D005305 ORTHO05D006394 1.3e-23 114.4 165 43.0
ClCG09G014160 Citrullus lanatus HOM05D005305 ORTHO05D006394 1.3e-23 114.4 145 45.5
Medtr2g007870 Medicago truncatula HOM05D005305 ORTHO05D006394 2.9e-23 113.2 162 45.7
TPR.G19715 Trifolium pratense HOM05D005305 ORTHO05D006394 3.8e-23 112.8 144 43.8
Glyma.08G183700 Glycine max HOM05D005305 ORTHO05D006394 4.3e-22 109.4 146 42.5
VMungo0540G1828 Vigna mungo HOM05D005305 ORTHO05D006394 4.3e-22 109.4 254 33.9
FAN13G2550 Fragaria x ananassa HOM05D005305 ORTHO05D006394 5.6e-22 109.0 154 44.2
FvH4_5g29740 Fragaria vesca HOM05D005305 ORTHO05D006394 7.3e-22 108.6 154 44.2
RcHm_v2.0_Chr7g0223251 Rosa chinensis HOM05D005305 ORTHO05D006394 1.6e-21 107.5 157 42.0
FAN04G1743 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.0e-20 104.8 161 41.6
HanXRQChr10g0294801 Helianthus annuus HOM05D005305 ORTHO05D006394 1.0e-20 104.8 174 39.1
MD15G1420000 Malus domestica HOM05D005305 ORTHO05D006394 1.0e-20 104.8 163 42.3
Lj1C922T21 Lonicera japonica HOM05D005305 ORTHO05D006394 1.4e-20 104.4 236 33.1
HanXRQChr10g0300271 Helianthus annuus HOM05D005305 ORTHO05D006394 2.3e-20 103.6 139 39.6
arahy.Tifrunner.gnm1.ann1.I1A2NR Arachis hypogaea HOM05D005305 ORTHO05D006394 5.2e-20 102.4 201 33.8
Nn5g28774 Nelumbo nucifera HOM05D005305 ORTHO05D006394 6.8e-20 102.1 163 38.7
Prupe.1G566000 Prunus persica HOM05D005305 ORTHO05D006394 6.8e-20 102.1 164 43.3
BolC3t17090H Brassica oleracea HOM05D000430 ORTHO05D000305 8.9e-20 101.7 64 87.5
FAN08G2621 Fragaria x ananassa HOM05D005305 ORTHO05D006394 8.9e-20 101.7 163 39.9
arahy.Tifrunner.gnm1.ann1.ZL3PAB Arachis hypogaea HOM05D005305 ORTHO05D006394 1.5e-19 100.9 202 33.2
Lsat_1_v5_gn_5_107520 Lactuca sativa HOM05D005305 ORTHO05D006394 1.5e-19 100.9 162 38.9
Sed0003606 Sechium edule HOM05D005305 ORTHO05D006394 1.5e-19 100.9 165 40.0
TWI31G0537 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 1.5e-19 100.9 164 43.9
Lalb_Chr15g0090581 Lupinus albus HOM05D005305 ORTHO05D006394 2.0e-19 100.5 158 39.9
TAR624G0561 Trochodendron aralioides HOM05D005305 ORTHO05D006394 3.4e-19 99.8 166 39.8
HanXRQChr11g0337491 Helianthus annuus HOM05D005305 ORTHO05D006394 4.4e-19 99.4 162 38.9
Duzib187G0918 Durio zibethinus HOM05D005305 ORTHO05D006394 5.8e-19 99.0 164 43.3
C03p48090 Brassica napus HOM05D000430 ORTHO05D000305 7.5e-19 98.6 64 85.9
Lsat_1_v5_gn_7_79481 Lactuca sativa HOM05D005305 ORTHO05D006394 7.5e-19 98.6 139 41.7
ECA234G0387 Erigeron canadensis HOM05D005305 ORTHO05D006394 2.9e-18 96.7 138 41.3
Nn1g06067 Nelumbo nucifera HOM05D005305 ORTHO05D006394 3.7e-18 96.3 166 39.2
C04p72400 Brassica napus HOM05D000250 ORTHO05D015314 4.9e-18 95.9 66 84.8
BolC4t28726H Brassica oleracea HOM05D000250 ORTHO05D015314 4.9e-18 95.9 66 84.8
MBI17_g24510_MAGBIO Magnolia biondii HOM05D005305 ORTHO05D006394 4.9e-18 95.9 156 41.7
MBI17_g24663_MAGBIO Magnolia biondii HOM05D005305 ORTHO05D006394 6.4e-18 95.5 166 41.0
Thecc.01G118700 Theobroma cacao HOM05D005305 ORTHO05D006394 1.1e-17 94.7 169 42.6
C05p26340 Brassica napus HOM05D005305 ORTHO05D015314 1.4e-17 94.4 84 66.7
PGR042G0513 Punica granatum HOM05D005305 ORTHO05D006394 1.8e-17 94.0 162 36.4
Manes.13G081800 Manihot esculenta HOM05D005305 ORTHO05D006394 1.6e-16 90.9 162 39.5
CAN.G516.6 Capsicum annuum HOM05D005305 ORTHO05D006394 2.0e-16 90.5 173 37.6
ECA236G3147 Erigeron canadensis HOM05D005305 ORTHO05D006394 2.0e-16 90.5 154 37.0
CiPaw.05G041500 Carya illinoinensis HOM05D005305 ORTHO05D006394 2.7e-16 90.1 186 38.7
Manes.12G149900 Manihot esculenta HOM05D005305 ORTHO05D006394 3.5e-16 89.7 143 41.3
C08p46310 Brassica napus HOM05D000250 ORTHO05D015314 7.8e-16 88.6 84 65.5
BolC8t52180H Brassica oleracea HOM05D000250 ORTHO05D015314 7.8e-16 88.6 84 65.5
Gohir.D12G092500 Gossypium hirsutum HOM05D005305 ORTHO05D006394 1.3e-15 87.8 183 36.6
Gorai.008G100000 Gossypium raimondii HOM05D005305 ORTHO05D006394 1.3e-15 87.8 183 36.6
QL11p019060 Quercus lobata HOM05D005305 ORTHO05D006394 2.3e-15 87.0 197 36.5
PGSC0003DMG400035592 Solanum tuberosum HOM05D005305 ORTHO05D006394 2.3e-15 87.0 175 38.3
Cpa.g.sc72.34 Carica papaya HOM05D005305 ORTHO05D006394 5.0e-15 85.9 159 39.6
COL.COLO4_22382 Corchorus olitorius HOM05D005305 ORTHO05D006394 5.0e-15 85.9 156 40.4
SalBow5G2993 Salvia bowleyana HOM05D005305 ORTHO05D006394 5.0e-15 85.9 155 37.4
Atru.chr4.616 Acer truncatum HOM05D005305 ORTHO05D006394 1.1e-14 84.7 158 39.9
FAN22G2313 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.1e-14 84.7 163 36.8
TWI79G0764 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 1.1e-14 84.7 161 41.6
Nitab4.5_0001582g0090 Nicotiana tabacum HOM05D005305 ORTHO05D006394 1.9e-14 84.0 152 37.5
Solyc11g005490.1 Solanum lycopersicum HOM05D005305 ORTHO05D006394 2.5e-14 83.6 155 38.7
Sopen11g001490 Solanum pennellii HOM05D005305 ORTHO05D006394 2.5e-14 83.6 155 38.7
Oeu035198.1 Olea europaea HOM05D005305 ORTHO05D006394 3.3e-14 83.2 160 35.0
FAN02G4273 Fragaria x ananassa HOM05D005305 ORTHO05D006394 4.3e-14 82.8 101 46.5
Gohir.A11G210433 Gossypium hirsutum HOM05D005305 ORTHO05D006394 4.3e-14 82.8 157 39.5
SGA_v2.0_scaffold47G17682 Striga asiatica HOM05D005305 ORTHO05D006394 5.6e-14 82.4 160 38.1
Potri.019G002300 Populus trichocarpa HOM05D005305 ORTHO05D006394 9.5e-14 81.6 166 36.1
Dinv02718 Davidia involucrata HOM05D005305 ORTHO05D006394 1.6e-13 80.9 128 40.6
FAN02G0608 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.6e-13 79.7 101 46.5
C02p49040 Brassica napus HOM05D005305 ORTHO05D100232 4.7e-13 79.3 172 40.1
Nitab4.5_0002138g0070 Nicotiana tabacum HOM05D005305 ORTHO05D006394 8.0e-13 78.6 153 35.9
PSO730G0002 Papaver somniferum HOM05D005305 ORTHO05D006394 1.1e-12 78.2 180 32.2
Sabra19G0004600 Salix brachista HOM05D005305 ORTHO05D006394 1.1e-12 78.2 177 36.2
FvH4_2g02450 Fragaria vesca HOM05D005305 ORTHO05D006394 2.3e-12 77.0 164 34.8
Potri.001G306800 Populus trichocarpa HOM05D005305 ORTHO05D006394 2.3e-12 77.0 179 34.6
Sc04g0009640 Simmondsia chinensis HOM05D005305 ORTHO05D006394 3.1e-12 76.6 205 31.7
Ah.03g133360 Amaranthus hybridus HOM05D005305 ORTHO05D006394 6.8e-12 75.5 155 34.8
BcaC02g07006 Brassica carinata HOM05D000250 ORTHO05D015314 6.8e-12 75.5 41 97.6
FAN15G2678 Fragaria x ananassa HOM05D005305 ORTHO05D006394 6.8e-12 75.5 164 33.5
unitig_32.g10686 Utricularia gibba HOM05D005305 ORTHO05D006394 8.9e-12 75.1 150 34.0
AUR62024239 Chenopodium quinoa HOM05D005305 ORTHO05D006394 1.2e-11 74.7 169 34.3
AUR62005501 Chenopodium quinoa HOM05D005305 ORTHO05D006394 1.5e-11 74.3 169 34.9
FAN05G3957 Fragaria x ananassa HOM05D005305 ORTHO05D006394 5.8e-11 72.4 101 43.6
Migut.L00049 Erythranthe guttata HOM05D005305 ORTHO05D006394 3.7e-10 69.7 153 34.6
DCAR_001409 Daucus carota HOM05D005305 ORTHO05D006394 4.9e-10 69.3 153 36.6
FvH4_2g02380 Fragaria vesca HOM05D005305 ORTHO05D006394 4.9e-10 69.3 164 34.8
FAN02G3216 Fragaria x ananassa HOM05D005305 ORTHO05D006394 4.9e-10 69.3 155 34.8
FvH4_4g13350 Fragaria vesca HOM05D005305 ORTHO05D006394 6.4e-10 68.9 125 41.6
Duzib251G0433 Durio zibethinus HOM05D002727 ORTHO05D002856 1.1e-09 68.2 149 36.9
FAN20G0407 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.2e-09 66.6 188 34.6
FAN20G1442 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.2e-09 66.6 188 34.6
FAN20G2254 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.2e-09 66.6 188 34.6
FAN20G2361 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.2e-09 66.6 188 34.6
FvH4_2g04910 Fragaria vesca HOM05D005305 ORTHO05D006394 7.0e-09 65.5 157 35.0
Thecc.02G278300 Theobroma cacao HOM05D002727 ORTHO05D002856 1.2e-08 64.7 145 34.5
DCAR_019203 Daucus carota HOM05D007205 ORTHO05D009175 6.6e-07 58.9 143 29.4
TAR381G1643 Trochodendron aralioides HOM05D005305 ORTHO05D006394 8.6e-07 58.5 81 42.0
FAN20G2548 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.5e-06 57.0 172 30.2
FAN24G2323 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.5e-06 57.0 188 33.5
ECA248G2956 Erigeron canadensis HOM05D005305 ORTHO05D006394 3.3e-06 56.6 109 39.4
Rhsim06G0154800 Rhododendron simsii HOM05D007205 ORTHO05D009175 4.3e-06 56.2 106 33.0
EL10Ac6g13873 Beta vulgaris HOM05D005305 ORTHO05D006394 7.3e-06 55.5 102 35.3
FvH4_2g32760 Fragaria vesca HOM05D002727 ORTHO05D002856 7.3e-06 55.5 172 30.2
QL01p002083 Quercus lobata HOM05D002727 ORTHO05D002856 9.5e-06 55.1 157 32.5


User provided reference genes

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