Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p30570 Brassica napus HOM05D008086 ORTHO05D004972 3.3e-135 485.0 228 100.0
BraA02t08074Z Brassica rapa HOM05D008086 ORTHO05D004972 1.7e-131 472.6 228 97.8
BcaC03g16869 Brassica carinata HOM05D008086 ORTHO05D004972 9.9e-100 367.1 266 69.2
C02p51250 Brassica napus HOM05D008086 ORTHO05D004972 1.0e-96 357.1 273 67.0
BcaC03g17198 Brassica carinata HOM05D008086 ORTHO05D004972 6.7e-96 354.4 273 66.7
BolC2t11215H Brassica oleracea HOM05D008086 ORTHO05D004972 6.7e-96 354.4 273 66.7
BolC2t10802H Brassica oleracea HOM05D008086 ORTHO05D004972 1.1e-93 347.1 235 71.9
C07p30570 Brassica napus HOM05D008086 ORTHO05D004972 4.6e-89 331.6 276 61.2
BcaC04g19776 Brassica carinata HOM05D008086 ORTHO05D004972 3.0e-88 328.9 267 61.8
BcaC06g34302 Brassica carinata HOM05D008086 ORTHO05D004972 1.5e-87 326.6 276 59.8
C09p51830 Brassica napus HOM05D008086 ORTHO05D004972 1.5e-87 326.6 267 61.4
C02p47660 Brassica napus HOM05D008086 ORTHO05D004972 2.5e-87 325.9 201 77.6
BraA06t27411Z Brassica rapa HOM05D008086 ORTHO05D004972 7.4e-87 324.3 274 60.6
BcaC06g31340 Brassica carinata HOM05D008086 ORTHO05D004972 8.2e-86 320.9 279 58.4
BraA02t08071Z Brassica rapa HOM05D008086 ORTHO05D004972 5.3e-85 318.2 233 69.1
BolC1t05406H Brassica oleracea HOM05D008086 ORTHO05D004972 6.9e-85 317.8 268 60.1
BcaC03g16910 Brassica carinata HOM05D008086 ORTHO05D004972 1.5e-84 316.6 196 79.1
BcaC06g31429 Brassica carinata HOM05D008086 ORTHO05D004972 1.5e-84 316.6 276 58.3
BraA02t08035Z Brassica rapa HOM05D008086 ORTHO05D004972 6.5e-83 311.2 274 62.0
BolC9t58045H Brassica oleracea HOM05D008086 ORTHO05D004972 2.5e-82 309.3 261 59.8
A01p41900 Brassica napus HOM05D008086 ORTHO05D004972 3.2e-82 308.9 271 58.3
A02p30530 Brassica napus HOM05D008086 ORTHO05D004972 2.7e-81 305.8 238 68.1
A10p16630 Brassica napus HOM05D008086 ORTHO05D004972 3.0e-72 275.8 231 61.0
BcaB07g30809 Brassica carinata HOM05D008086 ORTHO05D004972 1.2e-68 263.8 218 63.8
A06p45430 Brassica napus HOM05D008086 ORTHO05D004972 2.0e-68 263.1 230 59.6
C07p31230 Brassica napus HOM05D008086 ORTHO05D004972 1.4e-64 250.4 257 52.5
BolC7t43664H Brassica oleracea HOM05D008086 ORTHO05D004972 1.4e-64 250.4 257 52.5
BraA06t27366Z Brassica rapa HOM05D008086 ORTHO05D004972 8.8e-64 247.7 254 52.0
AL8G10360 Arabidopsis lyrata HOM05D008086 ORTHO05D004972 9.7e-63 244.2 261 52.1
BcaC06g31366 Brassica carinata HOM05D008086 ORTHO05D004972 2.8e-62 242.7 238 52.5
BcaC06g34304 Brassica carinata HOM05D008086 ORTHO05D004972 2.8e-62 242.7 216 59.3
A06p44950 Brassica napus HOM05D008086 ORTHO05D004972 6.3e-62 241.5 244 52.9
C07p30540 Brassica napus HOM05D008086 ORTHO05D004972 8.2e-62 241.1 274 49.6
BcaC09g48101 Brassica carinata HOM05D003507 ORTHO05D004324 1.8e-61 240.0 233 54.9
BolC2t10843H Brassica oleracea HOM05D008086 ORTHO05D004972 1.8e-61 240.0 211 63.0
BcaC03g16909 Brassica carinata HOM05D008086 ORTHO05D004972 1.2e-60 237.3 225 59.6
CARHR173760 Cardamine hirsuta HOM05D008086 ORTHO05D004972 3.5e-60 235.7 259 49.8
AL8G10380 Arabidopsis lyrata HOM05D008086 ORTHO05D004972 2.9e-59 232.6 258 51.2
BcaC06g31364 Brassica carinata HOM05D008086 ORTHO05D004972 8.5e-59 231.1 251 49.4
Carub.0008s0020 Capsella rubella HOM05D008086 ORTHO05D004972 1.5e-58 230.3 263 49.4
A02p30190 Brassica napus HOM05D008086 ORTHO05D004972 2.5e-58 229.6 223 59.2
BcaC06g34235 Brassica carinata HOM05D008086 ORTHO05D004972 6.1e-57 224.9 258 48.1
C07p31290 Brassica napus HOM05D008086 ORTHO05D004972 1.8e-56 223.4 254 48.8
CARHR173730 Cardamine hirsuta HOM05D008086 ORTHO05D004972 5.7e-55 218.4 259 46.3
CARHR183270 Cardamine hirsuta HOM05D008086 ORTHO05D004972 7.4e-55 218.0 239 50.6
C03p62430 Brassica napus HOM05D008086 ORTHO05D004972 3.7e-54 215.7 119 85.7
C07p31250 Brassica napus HOM05D008086 ORTHO05D004972 4.8e-54 215.3 244 49.6
Thhalv10001213m.g Eutrema salsugineum HOM05D008086 ORTHO05D004972 1.8e-53 213.4 201 53.7
BcaNung07056 Brassica carinata HOM05D008086 ORTHO05D004972 2.4e-53 213.0 240 50.4
A06p44930 Brassica napus HOM05D008086 ORTHO05D004972 2.4e-53 213.0 245 49.0
BolC2t10844H Brassica oleracea HOM05D008086 ORTHO05D041227 2.4e-53 213.0 123 83.7
BolC7t43666H Brassica oleracea HOM05D008086 ORTHO05D004972 2.4e-53 213.0 245 49.4
BraA06t27364Z Brassica rapa HOM05D008086 ORTHO05D004972 2.4e-53 213.0 245 49.0
BcaC06g34237 Brassica carinata HOM05D008086 ORTHO05D004972 7.0e-53 211.5 269 45.0
CARHR174690 Cardamine hirsuta HOM05D008086 ORTHO05D004972 3.5e-52 209.1 242 47.1
C02p48110 Brassica napus HOM05D008086 ORTHO05D004972 5.0e-51 205.3 194 60.3
Aa31LG9G5430 Aethionema arabicum HOM05D008086 ORTHO05D004972 4.2e-50 202.2 231 45.5
THA.LOC104798375 Tarenaya hassleriana HOM05D008086 ORTHO05D004972 4.2e-50 202.2 233 46.4
BolC3t18501H Brassica oleracea HOM05D008086 ORTHO05D004972 2.0e-47 193.4 108 84.3
BcaC06g31356 Brassica carinata HOM05D008086 ORTHO05D004972 6.3e-46 188.3 278 41.0
CARHR173740 Cardamine hirsuta HOM05D008086 ORTHO05D004972 7.7e-44 181.4 216 45.8
AT5G47590 Arabidopsis thaliana HOM05D008086 ORTHO05D004972 5.0e-43 178.7 152 59.9
C02p48120 Brassica napus HOM05D008086 ORTHO05D041227 9.4e-42 174.5 104 80.8
A02p30540 Brassica napus HOM05D008086 ORTHO05D004972 5.0e-35 152.1 149 57.0
BraA02t08072Z Brassica rapa HOM05D008086 ORTHO05D004972 2.5e-34 149.8 148 56.1
Thecc.03G253000 Theobroma cacao HOM05D008086 ORTHO05D004972 5.2e-24 115.5 116 51.7
AT4G16545 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 3.5e-20 102.8 119 42.0
THA.LOC104815492 Tarenaya hassleriana HOM05D007337 ORTHO05D004972 6.0e-20 102.1 145 39.3
Thhalv10026831m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 1.0e-19 101.3 119 42.0
Carub.0007s2493 Capsella rubella HOM05D007337 ORTHO05D004972 1.3e-19 100.9 119 41.2
A08p12570 Brassica napus HOM05D007337 ORTHO05D004972 3.9e-19 99.4 133 39.1
BraA08t33248Z Brassica rapa HOM05D007337 ORTHO05D004972 3.9e-19 99.4 133 39.1
BcaC07g37998 Brassica carinata HOM05D007337 ORTHO05D004972 5.0e-19 99.0 108 44.4
C07p32950 Brassica napus HOM05D008086 ORTHO05D004972 5.0e-19 99.0 115 49.6
BolC8t48380H Brassica oleracea HOM05D007337 ORTHO05D004972 5.0e-19 99.0 108 44.4
AT2G03020 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 1.5e-18 97.4 120 39.2
A01p20860 Brassica napus HOM05D007337 ORTHO05D004972 3.3e-18 96.3 153 39.2
C07p48020 Brassica napus HOM05D007337 ORTHO05D004972 3.3e-18 96.3 132 36.4
BcaNung02865 Brassica carinata HOM05D007337 ORTHO05D004972 1.2e-17 94.4 122 37.7
Aa31LG2G12670 Aethionema arabicum HOM05D007337 ORTHO05D004972 2.8e-17 93.2 119 38.7
BolC7t45326H Brassica oleracea HOM05D007337 ORTHO05D004972 2.8e-17 93.2 128 35.9
A03p49980 Brassica napus HOM05D007337 ORTHO05D004972 3.6e-17 92.8 136 35.3
QL12p012461 Quercus lobata HOM05D008086 ORTHO05D004972 6.2e-17 92.0 149 37.6
BraA03t14091Z Brassica rapa HOM05D007337 ORTHO05D004972 8.1e-17 91.7 122 36.9
AT4G16540 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 2.3e-16 90.1 129 34.9
BcaC06g33493 Brassica carinata HOM05D007337 ORTHO05D004972 6.8e-16 88.6 118 35.6
BraA01t02004Z Brassica rapa HOM05D007337 ORTHO05D004972 2.6e-15 86.7 157 37.6
CARHR223030 Cardamine hirsuta HOM05D007337 ORTHO05D004972 2.6e-15 86.7 123 38.2
Sp7g15130 Schrenkiella parvula HOM05D007337 ORTHO05D004972 2.6e-15 86.7 228 29.4
BcaNung00177 Brassica carinata HOM05D007337 ORTHO05D004972 3.4e-15 86.3 113 40.7
BcaC09g50366 Brassica carinata HOM05D007337 ORTHO05D004972 4.4e-15 85.9 110 41.8
BcaNung00176 Brassica carinata HOM05D007337 ORTHO05D004972 4.4e-15 85.9 110 41.8
BolC1t02562H Brassica oleracea HOM05D007337 ORTHO05D004972 4.4e-15 85.9 156 37.2
C01p26190 Brassica napus HOM05D007337 ORTHO05D004972 5.8e-15 85.5 141 38.3
BcaNung02864 Brassica carinata HOM05D007337 ORTHO05D004972 7.5e-15 85.1 130 35.4
C02p33330 Brassica napus HOM05D007337 ORTHO05D004972 7.5e-15 85.1 120 40.0
BolC2t09369H Brassica oleracea HOM05D007337 ORTHO05D004972 7.5e-15 85.1 120 40.0
AL1G32140 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 9.8e-15 84.7 119 37.8
BcaC09g50365 Brassica carinata HOM05D007337 ORTHO05D004972 9.8e-15 84.7 138 38.4
QL12p012450 Quercus lobata HOM05D007337 ORTHO05D004972 9.8e-15 84.7 122 39.3
Thhalv10000293m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 1.3e-14 84.3 107 41.1
A02p20510 Brassica napus HOM05D007337 ORTHO05D004972 2.2e-14 83.6 126 37.3
Thhalv10026050m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 2.2e-14 83.6 119 37.8
BcaC03g15651 Brassica carinata HOM05D007337 ORTHO05D004972 6.4e-14 82.0 106 43.4
A03p49990 Brassica napus HOM05D007337 ORTHO05D004972 8.3e-14 81.6 216 27.8
Sp7g15140 Schrenkiella parvula HOM05D007337 ORTHO05D004972 3.2e-13 79.7 100 40.0
Sp7g15120 Schrenkiella parvula HOM05D007337 ORTHO05D004972 4.1e-13 79.3 108 34.3
AT4G16550 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 5.4e-13 79.0 123 37.4
AT4G16560 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 5.4e-13 79.0 123 37.4
BcaC06g33490 Brassica carinata HOM05D007337 ORTHO05D004972 7.1e-13 78.6 131 40.5
Carub.0007s2487 Capsella rubella HOM05D007337 ORTHO05D004972 7.1e-13 78.6 109 38.5
BcaC09g50368 Brassica carinata HOM05D007337 ORTHO05D004972 9.2e-13 78.2 233 24.9
BcaNung00175 Brassica carinata HOM05D007337 ORTHO05D004972 9.2e-13 78.2 233 24.9
BcaC06g33494 Brassica carinata HOM05D007337 ORTHO05D004972 1.2e-12 77.8 112 35.7
C07p48000 Brassica napus HOM05D007337 ORTHO05D004972 1.6e-12 77.4 154 36.4
AL7G38320 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 6.0e-12 75.5 132 33.3
AL7G38300 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 7.8e-12 75.1 129 36.4
AL7G38280 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 1.0e-11 74.7 109 37.6
A03p49960 Brassica napus HOM05D007337 ORTHO05D004972 1.7e-11 73.9 112 33.9
BolC7t45324H Brassica oleracea HOM05D007337 ORTHO05D004972 1.7e-11 73.9 115 41.7
BraA03t14088Z Brassica rapa HOM05D007337 ORTHO05D004972 1.7e-11 73.9 112 33.9
C07p47780 Brassica napus HOM05D007337 ORTHO05D004972 3.0e-11 73.2 124 31.5
Carub.0007s2488 Capsella rubella HOM05D007337 ORTHO05D004972 6.6e-11 72.0 125 32.8
AL7G38310 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 1.5e-10 70.9 216 29.2
A03p50000 Brassica napus HOM05D007337 ORTHO05D004972 1.5e-10 70.9 209 26.8
BraA01t02003Z Brassica rapa HOM05D007337 ORTHO05D004972 1.5e-10 70.9 188 25.5
CARHR222970 Cardamine hirsuta HOM05D007337 ORTHO05D004972 1.5e-10 70.9 120 32.5
Thhalv10026211m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 3.3e-10 69.7 88 38.6
BcaC06g33497 Brassica carinata HOM05D007337 ORTHO05D004972 4.3e-10 69.3 232 26.3
BolC7t45302H Brassica oleracea HOM05D007337 ORTHO05D004972 4.3e-10 69.3 124 30.6
BcaC09g50370 Brassica carinata HOM05D007337 ORTHO05D004972 7.3e-10 68.6 132 28.8
BolC1t02561H Brassica oleracea HOM05D007337 ORTHO05D004972 7.3e-10 68.6 132 28.8
BcaC06g33495 Brassica carinata HOM05D007337 ORTHO05D004972 9.5e-10 68.2 212 26.9
BcaNung02862 Brassica carinata HOM05D007337 ORTHO05D004972 9.5e-10 68.2 212 26.9
C07p48030 Brassica napus HOM05D007337 ORTHO05D004972 9.5e-10 68.2 211 26.1
CAN.G1218.23 Capsicum annuum HOM05D008086 ORTHO05D010560 9.5e-10 68.2 99 39.4
BcaC06g33478 Brassica carinata HOM05D007337 ORTHO05D004972 1.2e-09 67.8 117 31.6
Carub.0007s2491 Capsella rubella HOM05D007337 ORTHO05D004972 1.2e-09 67.8 145 29.0
A01p20850 Brassica napus HOM05D007337 ORTHO05D004972 1.6e-09 67.4 115 28.7
Thhalv10026955m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 1.6e-09 67.4 123 31.7
Peaxi162Scf00002g01721 Petunia axillaris HOM05D008086 ORTHO05D010560 1.6e-09 67.4 99 38.4
C01p26180 Brassica napus HOM05D007337 ORTHO05D004972 2.1e-09 67.0 134 28.4
AT4G16555 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 2.8e-09 66.6 129 33.3
Sp7g15160 Schrenkiella parvula HOM05D007337 ORTHO05D004972 2.8e-09 66.6 112 32.1
PGSC0003DMG400004806 Solanum tuberosum HOM05D008086 ORTHO05D010560 2.8e-09 66.6 99 38.4
Sopen08g027190 Solanum pennellii HOM05D001099 ORTHO05D010560 3.6e-09 66.2 99 38.4
Carub.0007s2489 Capsella rubella HOM05D007337 ORTHO05D004972 6.2e-09 65.5 143 28.7
CARHR223020 Cardamine hirsuta HOM05D007337 ORTHO05D004972 1.1e-08 64.7 131 30.5
BcaC03g13098 Brassica carinata HOM05D007337 ORTHO05D004972 1.4e-08 64.3 105 34.3
Solyc08g078720.3 Solanum lycopersicum HOM05D008086 ORTHO05D010560 1.8e-08 63.9 99 37.4
Nitab4.5_0008481g0040 Nicotiana tabacum HOM05D008086 ORTHO05D010560 4.0e-08 62.8 99 37.4
Sp7g15150 Schrenkiella parvula HOM05D007337 ORTHO05D004972 4.0e-08 62.8 99 37.4
CARHR223010 Cardamine hirsuta HOM05D007337 ORTHO05D004972 5.2e-08 62.4 83 37.3
Nitab4.5_0000312g0140 Nicotiana tabacum HOM05D001099 ORTHO05D010560 5.2e-08 62.4 99 36.4
BcaC01g04975 Brassica carinata HOM05D007337 ORTHO05D004972 1.5e-07 60.8 116 31.0
C03p31540 Brassica napus HOM05D007337 ORTHO05D004972 1.5e-07 60.8 116 31.0
BolC3t15498H Brassica oleracea HOM05D007337 ORTHO05D004972 1.5e-07 60.8 116 31.0
BolC7t45327H Brassica oleracea HOM05D007337 ORTHO05D004972 7.6e-07 58.5 111 29.7
BcaC06g33489 Brassica carinata HOM05D007337 ORTHO05D004972 9.9e-07 58.2 112 30.4
A06p44940 Brassica napus HOM05D009070 ORTHO05D010560 6.4e-06 55.5 102 33.3
BraA06t27365Z Brassica rapa HOM05D009070 ORTHO05D010560 6.4e-06 55.5 102 33.3
C07p31240 Brassica napus HOM05D009070 ORTHO05D010560 8.4e-06 55.1 102 33.3
BolC7t43665H Brassica oleracea HOM05D009070 ORTHO05D010560 8.4e-06 55.1 102 33.3
MELO3C013945.2 Cucumis melo HOM05D001099 ORTHO05D000958 8.4e-06 55.1 92 35.9
Dinv39135 Davidia involucrata HOM05D009070 ORTHO05D010560 8.4e-06 55.1 115 28.7


User provided reference genes

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