Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 2222.2 1167 100.0
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 2216.4 1167 99.8
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 2209.9 1171 99.3
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 2209.9 1171 99.3
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 2157.5 1169 97.0
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 2149.4 1097 99.7
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 2145.5 1177 95.9
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 2143.6 1173 96.3
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 2140.2 1177 95.7
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 2139.4 1169 95.9
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 2139.4 1188 95.1
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 2122.8 1171 95.7
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 2065.8 1171 92.5
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 1922.5 1162 85.6
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 1918.3 1167 85.0
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1912.5 1167 85.1
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1912.5 1167 85.2
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 1910.6 1170 82.4
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 1910.6 1167 85.4
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 1910.2 1166 85.4
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 1910.2 1163 83.4
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 1909.0 1167 85.3
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1909.0 1168 83.2
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1908.3 1169 83.9
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1908.3 1171 85.1
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1907.9 1171 85.1
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1906.7 1166 84.8
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 1906.3 1165 84.4
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1903.6 1166 84.6
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1903.6 1165 85.1
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1903.3 1164 84.5
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1902.5 1168 82.2
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1902.5 1166 84.5
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1899.0 1168 85.0
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 1898.6 1168 83.0
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1897.9 1165 84.6
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 1897.1 1173 84.6
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1893.6 1164 84.5
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1892.9 1170 83.7
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 1890.9 1162 83.6
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 1889.8 1167 83.7
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1889.0 1165 84.9
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1888.6 1166 83.1
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 1888.2 1167 83.7
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 1887.8 1165 84.8
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1887.1 1176 84.4
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 1887.1 1167 83.4
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1885.9 1170 84.6
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 1884.8 1167 82.3
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 1880.9 1170 83.2
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 1880.5 1167 83.5
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1878.6 1168 82.8
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1877.1 1162 84.0
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 1876.3 1167 82.7
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 1875.5 1174 83.2
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1875.1 1168 83.0
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1873.2 1179 82.0
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1872.8 1168 83.9
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1872.8 1175 83.5
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1871.3 1200 82.6
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1864.4 1173 82.5
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 1860.5 1165 82.1
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 1860.5 1165 82.1
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1857.8 1167 81.8
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1856.3 1168 82.2
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1855.1 1160 82.2
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1854.7 1173 82.1
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 1852.0 1165 82.0
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1849.3 1091 85.2
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1848.9 1181 81.8
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1847.8 1200 80.9
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1847.8 1178 81.9
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 1841.6 1212 78.9
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1840.9 1165 82.0
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1838.2 1164 81.3
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1830.5 1172 81.4
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1830.1 1167 82.3
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1827.8 1166 82.2
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1826.6 1163 81.3
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1823.1 1167 78.6
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1822.0 1204 79.2
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1820.8 1165 80.7
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1806.6 1164 80.6
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1797.3 1165 81.0
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1791.9 1101 81.4
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1790.8 1158 80.7
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1782.3 1173 80.5
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1773.4 1193 79.8
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1738.8 1176 77.1
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1721.4 1323 70.7
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1717.6 1167 74.4
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1714.1 1168 74.1
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1679.8 1156 75.0
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1669.4 1166 74.2
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1629.0 1184 70.9
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1603.6 1165 69.9
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1602.4 1152 76.4
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1585.5 1166 69.7
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1565.1 998 80.6
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 0.0e+00 1524.6 944 82.9
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1428.7 848 85.8
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 1407.1 1163 63.6
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 0.0e+00 1398.6 1166 61.3
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1375.5 839 82.7
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1351.7 1162 59.9
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1342.4 1163 60.0
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1338.6 1180 59.4
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 0.0e+00 1323.9 799 83.4
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 0.0e+00 1255.4 798 79.3
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1187.6 786 76.1
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 0.0e+00 1091.3 695 80.7
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 2.1e-310 1069.3 922 58.9
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 1.6e-299 1033.1 625 85.4
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 5.0e-296 1021.5 1131 47.1
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 8.8e-285 984.2 661 77.8
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 5.9e-281 971.5 577 87.2
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 2.0e-273 946.4 742 68.7
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 1.6e-270 936.8 547 87.9
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 8.0e-270 934.5 599 82.0
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 2.1e-262 909.8 587 78.7
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 8.9e-245 851.3 525 77.9
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 2.4e-213 746.9 465 78.3
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 1.5e-204 717.6 486 79.4
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 9.3e-194 681.8 398 82.7
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 3.0e-152 543.9 360 79.7
Aqoxy5G03474 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 1.7e-139 501.5 350 78.6
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 1.9e-117 428.3 379 59.6
Zm00001eb091580 Zea mays HOM05D005231 ORTHO05D006387 7.3e-106 389.8 279 71.3
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 1.7e-86 325.5 195 81.5
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 1.9e-66 258.8 168 85.7
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 1.1e-45 189.9 144 70.8
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 3.0e-43 181.8 104 95.2
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 1.5e-42 179.5 110 90.0
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 1.7e-41 176.0 109 88.1
BraA03t12406Z Brassica rapa HOM05D002210 ORTHO05D002304 1.6e-36 159.5 78 97.4
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 3.1e-32 145.2 87 79.3
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 9.1e-32 143.7 96 79.2
C03p39410 Brassica napus HOM05D005231 ORTHO05D006387 3.7e-25 121.7 104 86.5
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 9.8e-18 97.1 125 50.4
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 6.4e-17 94.4 82 58.5
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 1.1e-16 93.6 82 59.8
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 4.4e-10 71.6 51 64.7
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 5.8e-10 71.2 51 64.7
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 4.9e-09 68.2 46 67.4
MCO15G368 Micromonas commoda HOM05D005231 ORTHO05D006387 7.0e-08 64.3 281 27.8
Manes.10G036656 Manihot esculenta HOM05D005231 ORTHO05D006387 7.8e-07 60.8 57 56.1


User provided reference genes

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