Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p30260 Brassica napus HOM05D003594 ORTHO05D004268 5.5e-68 260.8 126 100.0
A03p57890 Brassica napus HOM05D003594 ORTHO05D004268 9.4e-68 260.0 126 99.2
C02p37120 Brassica napus HOM05D003594 ORTHO05D004268 3.1e-63 245.0 138 87.7
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 5.2e-50 201.1 111 86.5
BolC5t29265H Brassica oleracea HOM05D003594 ORTHO05D004268 5.2e-50 201.1 97 96.9
C03p91380 Brassica napus HOM05D003594 ORTHO05D004268 7.5e-49 197.2 97 95.9
BolC3t21454H Brassica oleracea HOM05D003594 ORTHO05D004268 7.5e-49 197.2 97 95.9
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 2.9e-48 195.3 111 84.7
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 2.9e-48 195.3 111 84.7
BolC7t45516H Brassica oleracea HOM05D003594 ORTHO05D004268 4.9e-48 194.5 97 94.8
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 6.4e-48 194.1 111 83.8
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 1.4e-47 193.0 111 82.9
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 5.4e-47 191.0 111 82.0
CARHR029630 Cardamine hirsuta HOM05D003594 ORTHO05D004268 7.8e-46 187.2 111 82.0
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 8.6e-45 183.7 109 84.4
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 1.1e-44 183.3 109 81.7
BcaC05g27050 Brassica carinata HOM05D003594 ORTHO05D004268 3.3e-44 181.8 109 82.6
A09p36300 Brassica napus HOM05D003594 ORTHO05D004268 3.3e-44 181.8 109 82.6
C05p29080 Brassica napus HOM05D003594 ORTHO05D004268 3.3e-44 181.8 109 82.6
BolC5t31639H Brassica oleracea HOM05D003594 ORTHO05D004268 3.3e-44 181.8 109 82.6
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 3.3e-44 181.8 109 82.6
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 5.6e-44 181.0 108 82.4
BraA03t14853Z Brassica rapa HOM05D003594 ORTHO05D004268 2.1e-43 179.1 87 98.9
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 2.8e-43 178.7 100 85.0
C03p54150 Brassica napus HOM05D003594 ORTHO05D004268 4.7e-43 177.9 87 97.7
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 8.1e-43 177.2 109 79.8
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 2.2e-40 169.1 111 76.6
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 9.5e-36 153.7 101 73.3
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 4.9e-32 141.4 102 62.7
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 1.9e-31 139.4 108 67.6
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 1.9e-31 139.4 102 63.7
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 3.2e-31 138.7 113 59.3
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 9.2e-31 137.1 113 57.5
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 2.1e-30 136.0 113 60.2
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 2.1e-30 136.0 103 63.1
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 3.5e-30 135.2 116 55.2
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 3.5e-30 135.2 102 62.7
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 4.6e-30 134.8 102 59.8
C03p15410 Brassica napus HOM05D003594 ORTHO05D004268 6.0e-30 134.4 69 95.7
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 7.8e-30 134.0 102 59.8
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.0e-29 133.7 116 54.3
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 1.7e-29 132.9 98 61.2
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 5.1e-29 131.3 116 53.4
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 6.6e-29 131.0 102 57.8
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 6.6e-29 131.0 113 55.8
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 8.6e-29 130.6 101 58.4
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 8.6e-29 130.6 101 58.4
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.1e-28 130.2 102 56.9
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 1.1e-28 130.2 102 57.8
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 1.9e-28 129.4 101 57.4
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 4.3e-28 128.3 102 56.9
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 4.3e-28 128.3 108 58.3
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 5.6e-28 127.9 102 54.9
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 7.3e-28 127.5 102 56.9
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 7.3e-28 127.5 102 56.9
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 7.3e-28 127.5 97 60.8
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 9.6e-28 127.1 98 58.2
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 9.6e-28 127.1 113 57.5
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 1.6e-27 126.3 102 57.8
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.6e-27 126.3 98 58.2
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 2.1e-27 125.9 108 55.6
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 2.1e-27 125.9 100 55.0
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 2.8e-27 125.6 102 56.9
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 3.6e-27 125.2 98 59.2
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 3.6e-27 125.2 102 58.8
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 3.6e-27 125.2 102 55.9
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 4.7e-27 124.8 98 59.2
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 6.2e-27 124.4 110 53.6
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 1.1e-26 123.6 102 53.9
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 1.4e-26 123.2 109 53.2
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 1.4e-26 123.2 110 52.7
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 1.8e-26 122.9 98 53.1
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 1.8e-26 122.9 103 55.3
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 1.8e-26 122.9 102 52.0
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 1.8e-26 122.9 102 52.0
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 2.4e-26 122.5 102 57.8
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 8.9e-26 120.6 104 53.8
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 8.9e-26 120.6 106 54.7
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 8.9e-26 120.6 108 53.7
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 1.2e-25 120.2 113 53.1
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 2.0e-25 119.4 108 52.8
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 2.6e-25 119.0 107 51.4
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 3.4e-25 118.6 102 50.0
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 5.8e-25 117.9 102 53.9
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 7.6e-25 117.5 100 55.0
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 9.9e-25 117.1 102 50.0
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 1.3e-24 116.7 104 51.9
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 1.7e-24 116.3 102 50.0
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 2.2e-24 115.9 103 53.4
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 3.8e-24 115.2 102 52.9
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 6.4e-24 114.4 102 50.0
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 6.4e-24 114.4 102 52.0
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 6.4e-24 114.4 102 52.0
TWI63G1716 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 1.4e-23 113.2 103 52.4
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 1.9e-23 112.8 100 54.0
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 1.9e-23 112.8 100 53.0
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 1.2e-22 110.2 106 52.8
MSTRG.27538 Avicennia marina HOM05D003594 ORTHO05D004268 2.1e-22 109.4 79 59.5
MELO3C012354.2 Cucumis melo HOM05D003594 ORTHO05D004268 2.7e-22 109.0 106 51.9
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 7.8e-22 107.5 92 55.4
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 1.0e-21 107.1 132 40.9
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 1.7e-21 106.3 106 50.9
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 3.0e-21 105.5 102 48.0
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 3.0e-21 105.5 102 48.0
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 3.9e-21 105.1 86 57.0
Os06g0343900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 8.7e-21 104.0 109 42.2
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 1.1e-20 103.6 107 44.9
Os05g0295900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 1.5e-20 103.2 107 43.0
SGA_v2.0_scaffold295G47526 Striga asiatica HOM05D003594 ORTHO05D004268 4.3e-20 101.7 79 57.0
Gohir.D09G017550 Gossypium hirsutum HOM05D003594 ORTHO05D004268 7.3e-20 100.9 102 47.1
Gorai.006G020600 Gossypium raimondii HOM05D003594 ORTHO05D004268 7.3e-20 100.9 102 47.1
Cc02_g09730 Coffea canephora HOM05D003594 ORTHO05D004268 1.3e-19 100.1 85 57.6
Gohir.A09G018150 Gossypium hirsutum HOM05D003594 ORTHO05D004268 2.8e-19 99.0 102 46.1
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 2.8e-19 99.0 102 49.0
Atru.chr12.1014 Acer truncatum HOM05D003594 ORTHO05D004268 1.1e-18 97.1 90 48.9
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 1.8e-18 96.3 92 50.0
CsaV3_5G035420 Cucumis sativus L. HOM05D003594 ORTHO05D004268 3.1e-18 95.5 83 53.0
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 9.0e-18 94.0 159 35.8
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 1.5e-17 93.2 184 33.2
Pp3c8_9490 Physcomitrium patens HOM05D003594 ORTHO05D004268 2.6e-17 92.4 106 41.5
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 2.9e-16 89.0 81 53.1
MSTRG.11586 Avicennia marina HOM05D003594 ORTHO05D004268 3.8e-16 88.6 57 64.9
MD09G1289200 Malus domestica HOM05D003594 ORTHO05D004268 8.4e-16 87.4 59 66.1
Mapoly0108s0040 Marchantia polymorpha HOM05D003594 ORTHO05D004268 1.4e-15 86.7 109 37.6
BcaB08g34816 Brassica carinata HOM05D002573 ORTHO05D002918 6.0e-14 81.3 44 88.6
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 3.9e-13 78.6 61 57.4
SHI24302 Sapria himalayana HOM05D003594 ORTHO05D004268 8.7e-13 77.4 62 53.2
AL1G44190 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 1.5e-12 76.6 101 46.5
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 3.3e-12 75.5 108 37.0
CBR_g45421 Chara braunii HOM05D003594 ORTHO05D004268 2.1e-11 72.8 108 36.1
SMO364G0406 Selaginella moellendorffii HOM05D003594 ORTHO05D004268 3.6e-11 72.0 109 35.8
Hma1.2p1_2419F.1_g321820 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 6.2e-11 71.2 53 52.8
Pp3c15_8100 Physcomitrium patens HOM05D003594 ORTHO05D004268 8.1e-11 70.9 105 34.3
Pp3c15_8103 Physcomitrium patens HOM05D003594 ORTHO05D004268 8.1e-11 70.9 105 34.3
AUR62042073 Chenopodium quinoa HOM05D003594 ORTHO05D004268 4.9e-08 61.6 65 47.7
AagrBONN_evm.TU.Sc2ySwM_228.2672 Anthoceros agrestis HOM05D003594 ORTHO05D004268 1.6e-06 56.6 53 45.3
C03p15400 Brassica napus HOM05D050392 ORTHO05D103667 4.6e-06 55.1 56 50.0
Actinidia18596 Actinidia chinensis HOM05D003594 ORTHO05D004268 6.0e-06 54.7 102 37.3


User provided reference genes

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