Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p29400 Brassica napus HOM05D009484 ORTHO05D011605 8.2e-236 820.1 438 100.0
BraA02t07967Z Brassica rapa HOM05D009484 ORTHO05D011605 3.8e-233 811.2 438 98.9
C02p46640 Brassica napus HOM05D009484 ORTHO05D011605 1.5e-213 746.1 440 93.0
BolC2t10719H Brassica oleracea HOM05D009484 ORTHO05D011605 3.4e-213 745.0 440 92.7
BcaC03g16792 Brassica carinata HOM05D009484 ORTHO05D011605 5.6e-200 701.0 412 93.2
BcaB07g30428 Brassica carinata HOM05D009484 ORTHO05D011605 5.4e-179 631.3 412 84.2
Sp2g10770 Schrenkiella parvula HOM05D009484 ORTHO05D011605 6.4e-156 554.7 446 71.3
AT5G45850 Arabidopsis thaliana HOM05D009484 ORTHO05D011605 2.9e-132 476.1 453 62.0
AL8G12720 Arabidopsis lyrata HOM05D009484 ORTHO05D011605 2.3e-129 466.5 454 60.8
Carub.0008s0211 Capsella rubella HOM05D009484 ORTHO05D011605 7.7e-117 424.9 449 57.9
Thhalv10000904m.g Eutrema salsugineum HOM05D009484 ORTHO05D011605 2.1e-114 416.8 350 68.9
CARHR176120 Cardamine hirsuta HOM05D009484 ORTHO05D011605 7.2e-107 391.7 444 56.3
AT4G18630 Arabidopsis thaliana HOM05D009484 ORTHO05D011605 1.2e-56 224.9 501 38.1
C07p49890 Brassica napus HOM05D009484 ORTHO05D011605 3.5e-53 213.4 488 36.7
CARHR225490 Cardamine hirsuta HOM05D009484 ORTHO05D011605 6.0e-53 212.6 499 37.9
Sp7g15390 Schrenkiella parvula HOM05D009484 ORTHO05D011605 1.3e-52 211.5 499 37.5
BolC7t45490H Brassica oleracea HOM05D009484 ORTHO05D011605 5.1e-52 209.5 481 36.6
Carub.0007s2259 Capsella rubella HOM05D009484 ORTHO05D011605 1.9e-51 207.6 500 38.0
BraA01t01013Z Brassica rapa HOM05D009484 ORTHO05D011605 3.3e-51 206.8 497 37.8
C01p12590 Brassica napus HOM05D009484 ORTHO05D011605 4.3e-51 206.5 496 38.5
A03p51460 Brassica napus HOM05D009484 ORTHO05D011605 5.6e-51 206.1 484 37.8
BraA03t14229Z Brassica rapa HOM05D009484 ORTHO05D011605 5.6e-51 206.1 484 37.8
AL7G35630 Arabidopsis lyrata HOM05D009484 ORTHO05D011605 7.3e-51 205.7 503 37.2
A01p10670 Brassica napus HOM05D009484 ORTHO05D011605 1.3e-50 204.9 497 38.6
BolC1t01236H Brassica oleracea HOM05D009484 ORTHO05D011605 1.8e-49 201.1 493 36.9
Thhalv10025107m.g Eutrema salsugineum HOM05D009484 ORTHO05D011605 2.4e-49 200.7 490 37.1
BcaNung02666 Brassica carinata HOM05D009484 ORTHO05D011605 1.2e-48 198.4 475 36.0
THA.LOC104798428 Tarenaya hassleriana HOM05D009484 ORTHO05D011605 3.8e-47 193.4 537 35.4
Aa31LG9G7210 Aethionema arabicum HOM05D009484 ORTHO05D011605 2.4e-25 120.9 214 43.5
Aa31LG6G1380 Aethionema arabicum HOM05D009484 ORTHO05D011605 1.2e-21 108.6 315 33.7
BcaB03g12147 Brassica carinata HOM05D002063 ORTHO05D002075 4.5e-16 90.1 547 27.4
A08p25230 Brassica napus HOM05D002063 ORTHO05D002075 7.7e-16 89.4 549 26.6
BcaC01g00085 Brassica carinata HOM05D002063 ORTHO05D002075 1.9e-14 84.7 537 27.4
C03p75610 Brassica napus HOM05D002063 ORTHO05D002075 1.9e-14 84.7 537 27.4
BolC3t19818H Brassica oleracea HOM05D002063 ORTHO05D002075 4.2e-14 83.6 544 26.5
A07p10850 Brassica napus HOM05D002063 ORTHO05D002075 9.4e-14 82.4 503 27.0
Ciclev10014532m.g Citrus clementina HOM05D002063 ORTHO05D002075 1.6e-13 81.6 374 25.7
Cpa.g.sc7.77 Carica papaya HOM05D002063 ORTHO05D002075 3.6e-13 80.5 322 26.7
AL1G42960 Arabidopsis lyrata HOM05D002063 ORTHO05D002075 4.7e-13 80.1 602 25.7
CSS0018909 Camellia sinensis var. sinensis HOM05D002063 ORTHO05D002075 6.1e-13 79.7 576 25.5
Carub.0001s2741 Capsella rubella HOM05D002063 ORTHO05D002075 7.9e-13 79.3 606 25.6
CSS0048552 Camellia sinensis var. sinensis HOM05D002063 ORTHO05D002075 1.0e-12 79.0 576 25.5
Thecc.06G169400 Theobroma cacao HOM05D002063 ORTHO05D002075 1.8e-12 78.2 316 26.6
C07p16460 Brassica napus HOM05D002063 ORTHO05D002075 3.0e-12 77.4 520 25.2
Duzib061G0001 Durio zibethinus HOM05D002063 ORTHO05D002075 6.7e-12 76.3 316 26.6
Gohir.A10G036500 Gossypium hirsutum HOM05D002063 ORTHO05D002075 1.1e-11 75.5 321 27.4
BcaB03g13896 Brassica carinata HOM05D002063 ORTHO05D002075 1.5e-11 75.1 523 26.6
Gorai.011G039100 Gossypium raimondii HOM05D002063 ORTHO05D002075 2.0e-11 74.7 336 27.1
COL.COLO4_31282 Corchorus olitorius HOM05D002063 ORTHO05D002075 3.3e-11 73.9 525 24.4
Gohir.D10G037200 Gossypium hirsutum HOM05D002063 ORTHO05D002075 5.7e-11 73.2 320 27.2
Migut.M01031 Erythranthe guttata HOM05D002063 ORTHO05D002075 7.4e-11 72.8 592 24.3
Atru.chr10.1653 Acer truncatum HOM05D002063 ORTHO05D002075 9.7e-11 72.4 87 55.2
AT1G29240 Arabidopsis thaliana HOM05D002063 ORTHO05D002075 1.7e-10 71.6 601 24.3
BcaC06g35413 Brassica carinata HOM05D002063 ORTHO05D002075 2.2e-10 71.2 521 26.5
ECA234G1478 Erigeron canadensis HOM05D002063 ORTHO05D002075 2.8e-10 70.9 521 24.6
Lsat_1_v5_gn_4_49001 Lactuca sativa HOM05D002063 ORTHO05D002075 4.8e-10 70.1 499 25.7
Lj4g0025797 Lotus japonicus HOM05D002063 ORTHO05D002075 4.8e-10 70.1 402 24.6
Hund21171 Selenicereus undatus HOM05D002063 ORTHO05D002075 4.8e-10 70.1 464 24.4
CiPaw.09G070400 Carya illinoinensis HOM05D002063 ORTHO05D002075 6.3e-10 69.7 86 48.8
MD05G1299600 Malus domestica HOM05D002063 ORTHO05D002075 6.3e-10 69.7 336 26.2
Hund09960 Selenicereus undatus HOM05D002063 ORTHO05D002075 8.2e-10 69.3 414 26.1
QL05p047487 Quercus lobata HOM05D002063 ORTHO05D002075 1.4e-09 68.6 97 46.4
Aa31LG5G5900 Aethionema arabicum HOM05D002063 ORTHO05D002075 1.8e-09 68.2 576 24.7
AT2G34170 Arabidopsis thaliana HOM05D002063 ORTHO05D002075 3.1e-09 67.4 193 34.2
CSS0039343 Camellia sinensis var. sinensis HOM05D002063 ORTHO05D002075 3.1e-09 67.4 655 21.7
Cc02_g15110 Coffea canephora HOM05D002063 ORTHO05D002075 4.1e-09 67.0 321 26.5
Rhsim02G0143400 Rhododendron simsii HOM05D002063 ORTHO05D002075 4.1e-09 67.0 371 24.5
CAN.G1081.10 Capsicum annuum HOM05D002063 ORTHO05D002075 5.3e-09 66.6 77 42.9
Duzib192G1071 Durio zibethinus HOM05D002063 ORTHO05D002075 5.3e-09 66.6 90 47.8
GSVIVG01021224001 Vitis vinifera HOM05D002063 ORTHO05D002075 7.0e-09 66.2 350 25.7
CAN.G370.91 Capsicum annuum HOM05D002063 ORTHO05D002075 9.1e-09 65.9 97 44.3
MELO3C002658.2 Cucumis melo HOM05D002063 ORTHO05D002075 1.6e-08 65.1 86 46.5
Aqoxy1G02039 Aquilegia oxysepala HOM05D002063 ORTHO05D002075 2.0e-08 64.7 81 45.7
Dinv40689 Davidia involucrata HOM05D002063 ORTHO05D002075 2.0e-08 64.7 319 24.5
Potri.004G057800 Populus trichocarpa HOM05D002063 ORTHO05D002075 2.0e-08 64.7 82 48.8
Solyc02g076680.3 Solanum lycopersicum HOM05D002063 ORTHO05D002075 2.0e-08 64.7 90 47.8
BraA07t28875Z Brassica rapa HOM05D002063 ORTHO05D002075 2.6e-08 64.3 510 25.5
CANSAT54G0797 Cannabis sativa HOM05D002063 ORTHO05D002075 2.6e-08 64.3 598 22.9
Lj2A302T59 Lonicera japonica HOM05D002063 ORTHO05D002075 3.5e-08 63.9 448 23.2
Sopen02g021610 Solanum pennellii HOM05D002063 ORTHO05D002075 3.5e-08 63.9 100 44.0
PGSC0003DMG400010231 Solanum tuberosum HOM05D002063 ORTHO05D002075 3.5e-08 63.9 100 44.0
VMungo0540G2378 Vigna mungo HOM05D002063 ORTHO05D002075 3.5e-08 63.9 106 42.5
Cc05_g08420 Coffea canephora HOM05D002063 ORTHO05D002075 4.5e-08 63.5 82 43.9
Eucgr.E02752 Eucalyptus grandis HOM05D002063 ORTHO05D002075 4.5e-08 63.5 315 26.0
CSS0038617 Camellia sinensis var. sinensis HOM05D002063 ORTHO05D002075 5.9e-08 63.2 648 21.5
Lj6g0027755 Lotus japonicus HOM05D002063 ORTHO05D002075 5.9e-08 63.2 85 45.9
Sed0012556 Sechium edule HOM05D002063 ORTHO05D002075 5.9e-08 63.2 80 47.5
CsaV3_1G033290 Cucumis sativus L. HOM05D002063 ORTHO05D001117 7.7e-08 62.8 333 24.9
Gohir.D05G157400 Gossypium hirsutum HOM05D002063 ORTHO05D002075 7.7e-08 62.8 97 43.3
Potri.011G067000 Populus trichocarpa HOM05D002063 ORTHO05D002075 7.7e-08 62.8 82 50.0
GSVIVG01020715001 Vitis vinifera HOM05D002063 ORTHO05D002075 7.7e-08 62.8 312 26.9
Ca_17915_v3 Cicer arietinum L. HOM05D002063 ORTHO05D002075 1.0e-07 62.4 395 24.8
Duzib147G0122 Durio zibethinus HOM05D002063 ORTHO05D002075 1.0e-07 62.4 362 22.9
FvH4_3g07680 Fragaria vesca HOM05D002063 ORTHO05D002075 1.0e-07 62.4 89 47.2
Gorai.009G161900 Gossypium raimondii HOM05D002063 ORTHO05D002075 1.0e-07 62.4 97 43.3
TWI60G0150 Tripterygium wilfordii HOM05D002063 ORTHO05D002075 1.0e-07 62.4 171 35.7
BolC7t42142H Brassica oleracea HOM05D002063 ORTHO05D002075 1.3e-07 62.0 535 25.6
Ca_00441_v3 Cicer arietinum L. HOM05D002063 ORTHO05D002075 1.3e-07 62.0 72 48.6
Lalb_Chr07g0186431 Lupinus albus HOM05D002063 ORTHO05D002075 1.3e-07 62.0 84 44.0
MD17G1266300 Malus domestica HOM05D002063 ORTHO05D002075 1.7e-07 61.6 81 46.9
CiPaw.10G059700 Carya illinoinensis HOM05D002063 ORTHO05D002075 2.2e-07 61.2 81 43.2
Ciclev10014575m.g Citrus clementina HOM05D002063 ORTHO05D002075 2.2e-07 61.2 330 23.6
Haze_06218 Corylus avellana HOM05D002063 ORTHO05D002075 2.2e-07 61.2 317 26.2
Potri.014G142800 Populus trichocarpa HOM05D002063 ORTHO05D002075 2.2e-07 61.2 510 22.7
PGR042G2756 Punica granatum HOM05D002063 ORTHO05D002075 2.2e-07 61.2 176 34.1
PGSC0003DMG400020440 Solanum tuberosum HOM05D002063 ORTHO05D002075 2.2e-07 61.2 108 34.3
ClCG07G002750 Citrullus lanatus HOM05D002063 ORTHO05D002075 2.9e-07 60.8 355 25.9
Dinv16781 Davidia involucrata HOM05D002063 ORTHO05D002075 2.9e-07 60.8 82 43.9
Glyma.13G229000 Glycine max HOM05D002063 ORTHO05D002075 2.9e-07 60.8 105 41.9
AL4G30070 Arabidopsis lyrata HOM05D002063 ORTHO05D002075 3.8e-07 60.5 190 30.5
Cfa000617 Carpinus fangiana HOM05D002063 ORTHO05D002075 3.8e-07 60.5 337 26.4
ClCG03G007640 Citrullus lanatus HOM05D002063 ORTHO05D002075 3.8e-07 60.5 335 25.7
CsaV3_7G005700 Cucumis sativus L. HOM05D002063 ORTHO05D002075 3.8e-07 60.5 303 27.4
Thhalv10007223m.g Eutrema salsugineum HOM05D002063 ORTHO05D002075 3.8e-07 60.5 326 26.1
Sopen12g005710 Solanum pennellii HOM05D002063 ORTHO05D002075 3.8e-07 60.5 326 24.8
Hma1.2p1_0333F.1_g128110 Hydrangea macrophylla HOM05D002063 ORTHO05D002075 5.0e-07 60.1 307 24.8
Nn1g04435 Nelumbo nucifera HOM05D002063 ORTHO05D002075 5.0e-07 60.1 85 48.2
Phvul.006G175400 Phaseolus vulgaris HOM05D002063 ORTHO05D002075 5.0e-07 60.1 104 37.5
Solyc12g013960.3 Solanum lycopersicum HOM05D002063 ORTHO05D002075 5.0e-07 60.1 321 24.9
Sopen07g027090 Solanum pennellii HOM05D002063 ORTHO05D002075 5.0e-07 60.1 108 34.3
PGSC0003DMG400015369 Solanum tuberosum HOM05D002063 ORTHO05D002075 5.0e-07 60.1 255 26.3
arahy.Tifrunner.gnm1.ann1.V8BLVD Arachis hypogaea HOM05D002063 ORTHO05D002075 6.5e-07 59.7 73 49.3
Glyma.08G116800 Glycine max HOM05D002063 ORTHO05D002075 6.5e-07 59.7 82 43.9
Gohir.A05G154500 Gossypium hirsutum HOM05D002063 ORTHO05D002075 6.5e-07 59.7 328 25.0
A05p11510 Brassica napus HOM05D002063 ORTHO05D002075 8.5e-07 59.3 98 42.9
MBI07_g09571_MAGBIO Magnolia biondii HOM05D002063 ORTHO05D002075 8.5e-07 59.3 84 44.0
Nitab4.5_0000605g0110 Nicotiana tabacum HOM05D002063 ORTHO05D002075 8.5e-07 59.3 388 22.4
Prupe.4G062300 Prunus persica HOM05D002063 ORTHO05D002075 8.5e-07 59.3 418 24.9
Sabra04G0037500 Salix brachista HOM05D002063 ORTHO05D002075 8.5e-07 59.3 90 44.4
TPR.G11764 Trifolium pratense HOM05D002063 ORTHO05D002075 8.5e-07 59.3 88 44.3
Aa31LG9G13950 Aethionema arabicum HOM05D002063 ORTHO05D002075 1.1e-06 58.9 161 31.7
Medtr2g016190 Medicago truncatula HOM05D002063 ORTHO05D002075 1.1e-06 58.9 83 44.6
Prupe.3G117500 Prunus persica HOM05D002063 ORTHO05D002075 1.1e-06 58.9 77 45.5
Atru.chr6.2786 Acer truncatum HOM05D002063 ORTHO05D002075 1.5e-06 58.5 157 33.8
MD09G1236600 Malus domestica HOM05D002063 ORTHO05D002075 1.5e-06 58.5 79 45.6
Peaxi162Scf00940g00038 Petunia axillaris HOM05D002063 ORTHO05D002075 1.5e-06 58.5 105 40.0
Psat1g197800 Pisum sativum HOM05D002063 ORTHO05D002075 1.5e-06 58.5 94 39.4
Psat7g070160 Pisum sativum HOM05D002063 ORTHO05D002075 1.5e-06 58.5 74 44.6
C04p14980 Brassica napus HOM05D002063 ORTHO05D002075 1.9e-06 58.2 116 38.8
BolC4t23072H Brassica oleracea HOM05D002063 ORTHO05D002075 1.9e-06 58.2 116 38.8
FAN11G1180 Fragaria x ananassa HOM05D002063 ORTHO05D002075 1.9e-06 58.2 80 46.2
Phvul.002G239200 Phaseolus vulgaris HOM05D002063 ORTHO05D002075 1.9e-06 58.2 82 43.9
MSTRG.16154 Avicennia marina HOM05D002063 ORTHO05D002075 2.5e-06 57.8 73 46.6
MELO3C013577.2 Cucumis melo HOM05D002063 ORTHO05D002075 2.5e-06 57.8 250 25.2
Thhalv10016475m.g Eutrema salsugineum HOM05D002063 ORTHO05D002075 2.5e-06 57.8 107 40.2
Nitab4.5_0006875g0040 Nicotiana tabacum HOM05D002063 ORTHO05D002075 2.5e-06 57.8 108 35.2
Sabra14G0107900 Salix brachista HOM05D002063 ORTHO05D002075 2.5e-06 57.8 519 23.1
Sp1g25140 Schrenkiella parvula HOM05D002063 ORTHO05D002075 2.5e-06 57.8 90 41.1
CARHR128260 Cardamine hirsuta HOM05D002063 ORTHO05D002075 3.2e-06 57.4 82 46.3
Haze_13399 Corylus avellana HOM05D002063 ORTHO05D002075 3.2e-06 57.4 408 22.5
MELO3C018721.2 Cucumis melo HOM05D002063 ORTHO05D002075 3.2e-06 57.4 401 25.4
HanXRQChr16g0518671 Helianthus annuus HOM05D002063 ORTHO05D002075 3.2e-06 57.4 77 48.1
Oeu039912.2 Olea europaea HOM05D002063 ORTHO05D002075 3.2e-06 57.4 85 47.1
Aa31LG6G6300 Aethionema arabicum HOM05D002063 ORTHO05D002075 4.2e-06 57.0 178 32.0
CARHR124530 Cardamine hirsuta HOM05D002063 ORTHO05D002075 4.2e-06 57.0 345 27.8
Nitab4.5_0006324g0010 Nicotiana tabacum HOM05D002063 ORTHO05D002075 4.2e-06 57.0 152 36.2
TWI59G1423 Tripterygium wilfordii HOM05D002063 ORTHO05D002075 4.2e-06 57.0 323 24.1
PSO229G0031 Papaver somniferum HOM05D002063 ORTHO05D002075 5.5e-06 56.6 72 50.0
TWI14G1322 Tripterygium wilfordii HOM05D002063 ORTHO05D002075 5.5e-06 56.6 358 24.3
A05p14640 Brassica napus HOM05D002063 ORTHO05D002075 7.2e-06 56.2 447 24.6
FAN25G1222 Fragaria x ananassa HOM05D002063 ORTHO05D002075 7.2e-06 56.2 151 35.1
Manes.01G132600 Manihot esculenta HOM05D002063 ORTHO05D002075 7.2e-06 56.2 77 42.9
Medtr2g093020 Medicago truncatula HOM05D002063 ORTHO05D002075 7.2e-06 56.2 204 28.9
Thecc.01G151300 Theobroma cacao HOM05D002063 ORTHO05D002075 7.2e-06 56.2 72 47.2
BraA05t20098Z Brassica rapa HOM05D002063 ORTHO05D002075 9.4e-06 55.8 96 41.7
BraA05t20394Z Brassica rapa HOM05D002063 ORTHO05D002075 9.4e-06 55.8 448 25.9
Carub.0004s1580 Capsella rubella HOM05D002063 ORTHO05D002075 9.4e-06 55.8 188 27.1
FAN16G0090 Fragaria x ananassa HOM05D002063 ORTHO05D002075 9.4e-06 55.8 151 35.1
Gohir.A12G091500 Gossypium hirsutum HOM05D002063 ORTHO05D002075 9.4e-06 55.8 326 22.1
Lalb_Chr18g0054571 Lupinus albus HOM05D002063 ORTHO05D002075 9.4e-06 55.8 86 46.5
RcHm_v2.0_Chr2g0129871 Rosa chinensis HOM05D002063 ORTHO05D002075 9.4e-06 55.8 96 39.6
VMungo0251G3479 Vigna mungo HOM05D002063 ORTHO05D002075 9.4e-06 55.8 74 43.2


User provided reference genes

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