Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p27570 Brassica napus HOM05D004504 ORTHO05D005324 4.1e-174 614.8 342 100.0
BraA02t07790Z Brassica rapa HOM05D004504 ORTHO05D005324 4.1e-174 614.8 342 100.0
BolC2t10378H Brassica oleracea HOM05D004504 ORTHO05D005324 1.3e-164 583.2 342 95.6
BcaC03g16510 Brassica carinata HOM05D004504 ORTHO05D005324 7.3e-163 577.4 342 95.3
C02p43260 Brassica napus HOM05D004504 ORTHO05D005324 7.3e-163 577.4 342 95.3
BcaB07g30603 Brassica carinata HOM05D004504 ORTHO05D005324 1.1e-153 547.0 344 90.7
Sp2g07370 Schrenkiella parvula HOM05D004504 ORTHO05D005324 3.1e-137 492.3 344 82.6
Thhalv10003420m.g Eutrema salsugineum HOM05D004504 ORTHO05D005324 9.6e-131 470.7 342 81.6
AT5G42750 Arabidopsis thaliana HOM05D004504 ORTHO05D005324 1.7e-127 459.9 349 79.9
AL8G18380 Arabidopsis lyrata HOM05D004504 ORTHO05D005324 4.9e-127 458.4 348 79.9
Carub.0008s0620 Capsella rubella HOM05D004504 ORTHO05D005324 7.8e-125 451.1 352 76.7
CARHR181660 Cardamine hirsuta HOM05D004504 ORTHO05D005324 2.8e-122 442.6 347 76.4
Aa31LG9G12800 Aethionema arabicum HOM05D004504 ORTHO05D005324 1.2e-77 294.3 353 57.2
THA.LOC104806943 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 8.0e-61 238.4 372 52.4
Cfa018531 Carpinus fangiana HOM05D004504 ORTHO05D005324 5.0e-47 192.6 308 46.1
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 8.6e-47 191.8 344 42.7
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 1.9e-46 190.7 322 45.7
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 1.9e-46 190.7 322 45.7
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 5.6e-46 189.1 324 44.1
Prupe.1G437500 Prunus persica HOM05D004504 ORTHO05D005324 2.3e-44 183.7 344 43.3
TAR625G1455 Trochodendron aralioides HOM05D004504 ORTHO05D005324 4.0e-44 183.0 304 47.0
Nitab4.5_0001580g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 5.2e-44 182.6 307 48.9
COL.COLO4_26483 Corchorus olitorius HOM05D004504 ORTHO05D005324 1.2e-43 181.4 327 44.3
TWI36G0121 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 1.2e-43 181.4 309 45.0
TWI36G0477 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 1.5e-43 181.0 306 45.4
TAR381G0791 Trochodendron aralioides HOM05D004504 ORTHO05D005324 2.6e-43 180.3 307 46.3
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 3.4e-43 179.9 333 44.1
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 4.4e-43 179.5 300 47.7
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 1.7e-42 177.6 361 42.9
Duzib116G0149 Durio zibethinus HOM05D004504 ORTHO05D005324 2.2e-42 177.2 357 44.0
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 2.9e-42 176.8 331 44.4
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 2.9e-42 176.8 320 43.4
Manes.05G172300 Manihot esculenta HOM05D004504 ORTHO05D005324 3.7e-42 176.4 328 41.5
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 1.1e-41 174.9 336 41.7
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 7.0e-41 172.2 336 41.4
MSTRG.24329 Avicennia marina HOM05D004504 ORTHO05D005324 2.0e-40 170.6 333 43.5
FAN15G1553 Fragaria x ananassa HOM05D004504 ORTHO05D005324 2.7e-40 170.2 335 43.9
MBI06_g24649_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 2.7e-40 170.2 310 44.2
FvH4_2g34560 Fragaria vesca HOM05D004504 ORTHO05D005324 3.5e-40 169.9 334 43.4
Hma1.2p1_0718F.1_g208360 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 4.6e-40 169.5 302 43.0
Gohir.A01G119100 Gossypium hirsutum HOM05D004504 ORTHO05D005324 6.0e-40 169.1 323 44.0
ClCG08G015770 Citrullus lanatus HOM05D004504 ORTHO05D005324 7.8e-40 168.7 328 39.6
ClCG05G019780 Citrullus lanatus HOM05D004504 ORTHO05D005324 1.0e-39 168.3 340 40.9
MELO3C016744.2 Cucumis melo HOM05D004504 ORTHO05D005324 1.0e-39 168.3 326 40.8
Gohir.D05G204900 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.0e-39 168.3 332 42.8
Gorai.002G131700 Gossypium raimondii HOM05D004504 ORTHO05D005324 1.0e-39 168.3 319 44.2
Gohir.A05G201800 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.3e-39 167.9 330 43.9
Gohir.D01G107300 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.3e-39 167.9 319 44.2
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 1.7e-39 167.5 326 41.4
FAN20G0303 Fragaria x ananassa HOM05D004504 ORTHO05D005324 1.7e-39 167.5 336 42.6
MD08G1102600 Malus domestica HOM05D004504 ORTHO05D005324 1.7e-39 167.5 272 43.8
AUR62022419 Chenopodium quinoa HOM05D004504 ORTHO05D005324 3.0e-39 166.8 367 38.1
Glyma.06G039100 Glycine max HOM05D004504 ORTHO05D005324 3.0e-39 166.8 331 40.5
Hma1.2p1_0982F.1_g243930 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 3.9e-39 166.4 317 43.8
RcHm_v2.0_Chr6g0307761 Rosa chinensis HOM05D004504 ORTHO05D005324 3.9e-39 166.4 354 41.5
FAN27G0025 Fragaria x ananassa HOM05D004504 ORTHO05D005324 5.0e-39 166.0 357 42.3
Potri.002G127100 Populus trichocarpa HOM05D004504 ORTHO05D005324 5.0e-39 166.0 327 41.9
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 6.6e-39 165.6 317 42.0
Gorai.009G211200 Gossypium raimondii HOM05D004504 ORTHO05D005324 6.6e-39 165.6 332 42.2
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 1.5e-38 164.5 343 39.4
Sabra14G0022100 Salix brachista HOM05D004504 ORTHO05D005324 4.3e-38 162.9 323 43.0
MSTRG.22265 Avicennia marina HOM05D004504 ORTHO05D005324 5.6e-38 162.5 356 39.6
Manes.18G035600 Manihot esculenta HOM05D004504 ORTHO05D005324 5.6e-38 162.5 331 43.2
MD15G1084100 Malus domestica HOM05D004504 ORTHO05D005324 7.3e-38 162.2 272 43.8
DCAR_012769 Daucus carota HOM05D004504 ORTHO05D005324 9.5e-38 161.8 356 40.7
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 1.2e-37 161.4 317 41.6
Glyma.04G038100 Glycine max HOM05D004504 ORTHO05D005324 2.1e-37 160.6 339 42.2
CiPaw.16G045400 Carya illinoinensis HOM05D004504 ORTHO05D005324 2.8e-37 160.2 309 43.4
Medtr3g101560 Medicago truncatula HOM05D004504 ORTHO05D005324 4.7e-37 159.5 327 44.0
Glyma.14G082300 Glycine max HOM05D004504 ORTHO05D005324 6.2e-37 159.1 345 36.8
Peaxi162Scf00064g00008 Petunia axillaris HOM05D004504 ORTHO05D005324 6.2e-37 159.1 328 40.5
VMungo0647G0958 Vigna mungo HOM05D004504 ORTHO05D005324 6.2e-37 159.1 361 38.5
HanXRQChr09g0267891 Helianthus annuus HOM05D004504 ORTHO05D005324 8.0e-37 158.7 357 38.1
Lsat_1_v5_gn_6_114061 Lactuca sativa HOM05D004504 ORTHO05D005324 8.0e-37 158.7 345 40.0
Sed0027328 Sechium edule HOM05D004504 ORTHO05D005324 8.0e-37 158.7 316 41.5
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 1.1e-36 158.3 331 40.8
PSO170G6689 Papaver somniferum HOM05D004504 ORTHO05D005324 1.4e-36 157.9 324 42.3
Aqoxy5G01252 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 2.3e-36 157.1 329 41.3
Phvul.001G021300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 3.1e-36 156.8 351 38.5
Lj1g0007502 Lotus japonicus HOM05D004504 ORTHO05D005324 1.2e-35 154.8 316 39.2
Lsat_1_v5_gn_4_125561 Lactuca sativa HOM05D004504 ORTHO05D005324 1.5e-35 154.5 358 39.4
Sed0026223 Sechium edule HOM05D004504 ORTHO05D005324 1.5e-35 154.5 337 40.1
Lalb_Chr22g0355171 Lupinus albus HOM05D004504 ORTHO05D005324 3.4e-35 153.3 326 38.7
Sabra02G0099600 Salix brachista HOM05D004504 ORTHO05D005324 7.5e-35 152.1 334 40.7
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 1.3e-34 151.4 266 42.1
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 1.3e-34 151.4 309 42.4
Glyma.17G243000 Glycine max HOM05D004504 ORTHO05D005324 4.9e-34 149.4 326 39.3
PGR083G0364 Punica granatum HOM05D004504 ORTHO05D005324 6.4e-34 149.1 344 38.4
PSO210G2137 Papaver somniferum HOM05D004504 ORTHO05D005324 2.4e-33 147.1 317 42.0
MSTRG.1340 Avicennia marina HOM05D004504 ORTHO05D005324 4.1e-33 146.4 342 40.6
PGSC0003DMG400008020 Solanum tuberosum HOM05D004504 ORTHO05D005324 5.4e-33 146.0 310 41.3
AUR62042173 Chenopodium quinoa HOM05D004504 ORTHO05D005324 2.7e-32 143.7 305 38.0
Actinidia23268 Actinidia chinensis HOM05D001164 ORTHO05D001031 4.6e-32 142.9 306 41.5
arahy.Tifrunner.gnm1.ann1.2LG1YU Arachis hypogaea HOM05D004504 ORTHO05D005324 4.6e-32 142.9 362 38.1
MELO3C010878.2 Cucumis melo HOM05D004504 ORTHO05D005324 3.0e-31 140.2 256 40.2
TPR.G28115 Trifolium pratense HOM05D004504 ORTHO05D005324 1.9e-30 137.5 256 41.4
Solyc04g079110.1 Solanum lycopersicum HOM05D004504 ORTHO05D005324 2.5e-30 137.1 304 38.8
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 3.3e-30 136.7 297 38.7
Peaxi162Scf00252g00123 Petunia axillaris HOM05D004504 ORTHO05D005324 5.6e-30 136.0 331 35.0
PSO541G3526 Papaver somniferum HOM05D004504 ORTHO05D005324 9.5e-30 135.2 300 37.7
Sopen04g032720 Solanum pennellii HOM05D004504 ORTHO05D005324 1.6e-29 134.4 312 38.5
EL10Ac1g01723 Beta vulgaris HOM05D004504 ORTHO05D005324 2.1e-29 134.0 369 37.1
Aqoxy6G01353 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 6.2e-29 132.5 338 37.9
Atru.chr13.656 Acer truncatum HOM05D004504 ORTHO05D005324 8.1e-29 132.1 266 39.5
HanXRQChr16g0507531 Helianthus annuus HOM05D004504 ORTHO05D005324 8.1e-29 132.1 337 40.1
PSO675G2195 Papaver somniferum HOM05D004504 ORTHO05D005324 1.4e-28 131.3 301 37.9
MBI02_g17324_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 2.3e-28 130.6 344 35.8
Medtr1g019750 Medicago truncatula HOM05D004504 ORTHO05D005324 2.3e-28 130.6 325 38.5
MBI02_g02958_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 3.1e-28 130.2 344 35.8
Sed0004281 Sechium edule HOM05D004504 ORTHO05D005324 5.2e-28 129.4 309 39.2
HPP92_016728 Vanilla planifolia HOM05D004504 ORTHO05D005324 6.8e-28 129.0 327 39.4
PGSC0003DMG400015442 Solanum tuberosum HOM05D004504 ORTHO05D005324 2.6e-27 127.1 309 36.6
Duzib041G0178 Durio zibethinus HOM05D004504 ORTHO05D005324 3.4e-27 126.7 328 36.9
Sopen12g030760 Solanum pennellii HOM05D004504 ORTHO05D005324 3.4e-27 126.7 298 40.3
CAN.G1422.9 Capsicum annuum HOM05D000541 ORTHO05D000137 5.8e-27 125.9 393 34.4
Lalb_Chr24g0399251 Lupinus albus HOM05D004504 ORTHO05D005324 7.5e-27 125.6 285 36.1
Gohir.A06G017400 Gossypium hirsutum HOM05D004504 ORTHO05D005324 2.9e-26 123.6 308 37.7
SHI08291 Sapria himalayana HOM05D004504 ORTHO05D005324 3.7e-26 123.2 311 37.9
SalBow7G1688 Salvia bowleyana HOM05D004504 ORTHO05D005324 8.3e-26 122.1 352 35.8
TPR.G17544 Trifolium pratense HOM05D004504 ORTHO05D005324 1.4e-25 121.3 314 36.0
Lalb_Chr23g0267021 Lupinus albus HOM05D004504 ORTHO05D005324 2.4e-25 120.6 329 36.8
Lj5g0012770 Lotus japonicus HOM05D004504 ORTHO05D005324 3.2e-25 120.2 354 39.8
CAN.G371.30 Capsicum annuum HOM05D004504 ORTHO05D005324 2.7e-24 117.1 316 38.0
THA.LOC104804561 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 6.0e-24 115.9 328 37.8
Dinv39324 Davidia involucrata HOM05D004504 ORTHO05D005324 1.0e-23 115.2 180 45.6
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 6.6e-23 112.5 255 39.2
Nn1g04891 Nelumbo nucifera HOM05D004504 ORTHO05D005324 2.5e-22 110.5 208 42.3
PGR031G2315 Punica granatum HOM05D004504 ORTHO05D005324 4.3e-22 109.8 371 32.1
Rhsim06G0048600 Rhododendron simsii HOM05D004504 ORTHO05D005324 4.3e-22 109.8 307 37.8
SGA_v2.0_scaffold14G07036 Striga asiatica HOM05D004504 ORTHO05D005324 9.5e-22 108.6 256 39.1
Dinv35969 Davidia involucrata HOM05D004504 ORTHO05D005324 1.8e-20 104.4 340 32.1
RcHm_v2.0_Chr6g0307601 Rosa chinensis HOM05D004504 ORTHO05D005324 1.8e-20 104.4 300 36.0
Lj4P774T14 Lonicera japonica HOM05D004504 ORTHO05D005324 2.4e-20 104.0 215 40.5
CDE02G0300 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.5e-19 101.3 313 35.5
Oeu057287.1 Olea europaea HOM05D004504 ORTHO05D005324 4.4e-19 99.8 166 45.8
CDE06G1443 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 9.9e-19 98.6 313 33.2
CDE02G3707 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 6.4e-18 95.9 304 31.9
Sc15g0006190 Simmondsia chinensis HOM05D004504 ORTHO05D005324 8.4e-18 95.5 274 34.3
Sc15g0006270 Simmondsia chinensis HOM05D004504 ORTHO05D005324 8.4e-18 95.5 274 34.3
Gorai.010G018300 Gossypium raimondii HOM05D004504 ORTHO05D005324 9.2e-17 92.0 255 36.1
Actinidia22620 Actinidia chinensis HOM05D001164 ORTHO05D001031 1.2e-16 91.7 236 39.0
Lj4P54T34 Lonicera japonica HOM05D004504 ORTHO05D005324 1.6e-16 91.3 96 52.1
unitig_899.g15623 Utricularia gibba HOM05D004504 ORTHO05D005324 2.7e-16 90.5 315 32.1
GSVIVG01009517001 Vitis vinifera HOM05D004504 ORTHO05D005324 3.5e-16 90.1 143 47.6
Nitab4.5_0007986g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 6.6e-15 85.9 242 41.3
Psat6g012120 Pisum sativum HOM05D004504 ORTHO05D005324 1.1e-14 85.1 320 30.9
Eucgr.F02356 Eucalyptus grandis HOM05D004504 ORTHO05D005324 5.6e-14 82.8 336 33.0
unitig_26.g10024 Utricularia gibba HOM05D004504 ORTHO05D005324 1.8e-12 77.8 302 29.1
CDE09G0998 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 7.6e-11 72.4 316 29.7
Zm00001eb315000 Zea mays HOM05D004504 ORTHO05D005324 2.2e-10 70.9 234 32.5
Oeu044838.1 Olea europaea HOM05D004504 ORTHO05D005324 3.8e-10 70.1 193 38.9
SalBow2G2132 Salvia bowleyana HOM05D004504 ORTHO05D005324 3.8e-10 70.1 110 46.4
Dinv44508 Davidia involucrata HOM05D006303 ORTHO05D008007 4.2e-09 66.6 347 28.8
Manes.03G181100 Manihot esculenta HOM05D006303 ORTHO05D008007 5.4e-09 66.2 362 28.5
ATR0100G018 Amborella trichopoda HOM05D004504 ORTHO05D005324 1.2e-08 65.1 140 37.1
Os09g0459500 Oryza sativa ssp. japonica HOM05D004504 ORTHO05D005324 2.7e-08 63.9 70 54.3
SGA_v2.0_scaffold208G41968 Striga asiatica HOM05D004504 ORTHO05D005324 2.7e-08 63.9 324 28.7
FAN07G1279 Fragaria x ananassa HOM05D006303 ORTHO05D008007 6.0e-08 62.8 365 27.7
Medtr5g005960 Medicago truncatula HOM05D006303 ORTHO05D008007 1.0e-07 62.0 356 28.4
Duzib212G0816 Durio zibethinus HOM05D006303 ORTHO05D008007 1.3e-07 61.6 300 26.3
TWI09G0488 Tripterygium wilfordii HOM05D006303 ORTHO05D008007 1.7e-07 61.2 354 25.4
CDE09G1057 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 3.0e-07 60.5 94 47.9
MELO3C014489.2 Cucumis melo HOM05D006303 ORTHO05D008007 3.9e-07 60.1 293 27.6
Nn4g26265 Nelumbo nucifera HOM05D006303 ORTHO05D008007 5.1e-07 59.7 343 28.0
VMungo1215G3149 Vigna mungo HOM05D006303 ORTHO05D008007 5.1e-07 59.7 297 27.9
CsaV3_3G013490 Cucumis sativus L. HOM05D006303 ORTHO05D008007 6.6e-07 59.3 323 30.3
THA.LOC109116829 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 6.6e-07 59.3 118 43.2
unitig_749.g13680 Utricularia gibba HOM05D004504 ORTHO05D005324 6.6e-07 59.3 290 25.5
Thecc.04G227500 Theobroma cacao HOM05D006303 ORTHO05D008007 1.5e-06 58.2 305 28.2
HanXRQChr15g0466041 Helianthus annuus HOM05D006303 ORTHO05D008007 4.3e-06 56.6 339 28.0
ClCG06G006020 Citrullus lanatus HOM05D006303 ORTHO05D008007 5.6e-06 56.2 285 27.7
MELO3C006546.2 Cucumis melo HOM05D006303 ORTHO05D008007 5.6e-06 56.2 320 28.8
Oeu011558.1 Olea europaea HOM05D004504 ORTHO05D005324 7.3e-06 55.8 85 48.2
Sed0009344 Sechium edule HOM05D006303 ORTHO05D008007 7.3e-06 55.8 281 27.4


User provided reference genes

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