Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p27320 Brassica napus HOM05D004241 ORTHO05D018769 1.5e-47 192.6 101 100.0
A09p02030 Brassica napus HOM05D004241 ORTHO05D018769 6.0e-41 170.6 101 91.1
A09p61840 Brassica napus HOM05D004241 ORTHO05D018769 2.2e-35 152.1 80 98.8
BraA02t07759Z Brassica rapa HOM05D004241 ORTHO05D018769 1.1e-26 123.2 74 87.8
BraA07t28631Z Brassica rapa HOM05D004241 ORTHO05D018769 3.6e-25 118.2 74 85.1
Cpa.g.sc11.77 Carica papaya HOM05D004241 ORTHO05D006031 1.8e-21 105.9 76 72.4
BcaC09g50106 Brassica carinata HOM05D004241 ORTHO05D006031 1.2e-17 93.2 122 50.0
BolC1t02821H Brassica oleracea HOM05D004241 ORTHO05D006031 1.2e-17 93.2 122 50.0
BraA01t02235Z Brassica rapa HOM05D004241 ORTHO05D006031 1.2e-17 93.2 122 50.0
BcaB01g00474 Brassica carinata HOM05D004241 ORTHO05D006031 3.6e-17 91.7 122 49.2
BcaNung00368 Brassica carinata HOM05D004241 ORTHO05D006031 3.6e-17 91.7 122 49.2
A09p44970 Brassica napus HOM05D004241 ORTHO05D006031 3.6e-17 91.7 122 49.2
C08p27050 Brassica napus HOM05D004241 ORTHO05D006031 3.6e-17 91.7 122 49.2
BolC8t50320H Brassica oleracea HOM05D004241 ORTHO05D006031 3.6e-17 91.7 122 49.2
BraA09t39957Z Brassica rapa HOM05D004241 ORTHO05D006031 3.6e-17 91.7 122 49.2
Thhalv10010408m.g Eutrema salsugineum HOM05D004241 ORTHO05D006031 4.7e-17 91.3 122 48.4
Sp5g10450 Schrenkiella parvula HOM05D004241 ORTHO05D006031 4.7e-17 91.3 122 48.4
AL5G32280 Arabidopsis lyrata HOM05D004241 ORTHO05D006031 1.8e-16 89.4 122 47.5
BcaB01g00414 Brassica carinata HOM05D004241 ORTHO05D006031 1.8e-16 89.4 122 48.4
Carub.0005s1817 Capsella rubella HOM05D004241 ORTHO05D006031 1.8e-16 89.4 122 47.5
AT3G51820 Arabidopsis thaliana HOM05D004241 ORTHO05D006031 2.3e-16 89.0 122 46.7
CARHR161450 Cardamine hirsuta HOM05D004241 ORTHO05D006031 5.1e-16 87.8 122 45.9
C04p53880 Brassica napus HOM05D004241 ORTHO05D018769 6.7e-16 87.4 63 74.6
C09p54590 Brassica napus HOM05D004241 ORTHO05D018769 6.7e-16 87.4 63 74.6
BolC1t02697H Brassica oleracea HOM05D004241 ORTHO05D018769 6.7e-16 87.4 63 74.6
Aa31LG10G9090 Aethionema arabicum HOM05D004241 ORTHO05D006031 8.8e-16 87.0 122 46.7
PGR031G0770 Punica granatum HOM05D004241 ORTHO05D006031 8.8e-16 87.0 122 47.5
EL10Ac5g12540 Beta vulgaris HOM05D004241 ORTHO05D006031 1.5e-15 86.3 122 44.3
CDE08G0537 Ceratophyllum demersum HOM05D004241 ORTHO05D006031 2.0e-15 85.9 122 44.3
Nitab4.5_0000261g0130 Nicotiana tabacum HOM05D004241 ORTHO05D006031 2.0e-15 85.9 122 45.9
Sc07g0006700 Simmondsia chinensis HOM05D004241 ORTHO05D006031 2.0e-15 85.9 133 44.4
TWI74G0606 Tripterygium wilfordii HOM05D004241 ORTHO05D006031 2.0e-15 85.9 122 46.7
CDE04G1685 Ceratophyllum demersum HOM05D004241 ORTHO05D006031 2.6e-15 85.5 122 44.3
Cc06_g01120 Coffea canephora HOM05D004241 ORTHO05D006031 2.6e-15 85.5 122 46.7
Nitab4.5_0008676g0010 Nicotiana tabacum HOM05D004241 ORTHO05D006031 2.6e-15 85.5 122 45.9
Psat3g126440 Pisum sativum HOM05D004241 ORTHO05D006031 2.6e-15 85.5 122 45.9
Solyc09g014760.4 Solanum lycopersicum HOM05D004241 ORTHO05D006031 2.6e-15 85.5 122 45.9
Sopen09g007610 Solanum pennellii HOM05D004241 ORTHO05D006031 2.6e-15 85.5 122 45.9
PGSC0003DMG400008481 Solanum tuberosum HOM05D004241 ORTHO05D006031 2.6e-15 85.5 122 45.9
CAN.G283.14 Capsicum annuum HOM05D004241 ORTHO05D006031 3.3e-15 85.1 122 45.9
Dinv13159 Davidia involucrata HOM05D004241 ORTHO05D006031 3.3e-15 85.1 122 45.9
MBI15_g19417_MAGBIO Magnolia biondii HOM05D004241 ORTHO05D006031 3.3e-15 85.1 122 44.3
Peaxi162Scf00890g00119 Petunia axillaris HOM05D004241 ORTHO05D006031 3.3e-15 85.1 122 45.9
Actinidia05359 Actinidia chinensis HOM05D004241 ORTHO05D006031 4.4e-15 84.7 122 45.9
Aqoxy2G00847 Aquilegia oxysepala HOM05D004241 ORTHO05D006031 5.7e-15 84.3 122 44.3
Cfa017182 Carpinus fangiana HOM05D004241 ORTHO05D006031 5.7e-15 84.3 124 46.0
Manes.09G106900 Manihot esculenta HOM05D004241 ORTHO05D006031 5.7e-15 84.3 122 45.1
Medtr7g069210 Medicago truncatula HOM05D004241 ORTHO05D006031 5.7e-15 84.3 122 45.9
AUR62030817 Chenopodium quinoa HOM05D004241 ORTHO05D006031 7.4e-15 84.0 122 43.4
Ca_07660_v3 Cicer arietinum L. HOM05D004241 ORTHO05D006031 7.4e-15 84.0 122 45.1
ClCG04G006920 Citrullus lanatus HOM05D004241 ORTHO05D006031 7.4e-15 84.0 122 45.1
CsaV3_4G026340 Cucumis sativus L. HOM05D004241 ORTHO05D006031 7.4e-15 84.0 122 45.1
Duzib128G1618 Durio zibethinus HOM05D004241 ORTHO05D006031 7.4e-15 84.0 122 45.1
Hma1.2p1_0362F.1_g136490 Hydrangea macrophylla HOM05D004241 ORTHO05D006031 7.4e-15 84.0 122 46.7
MD12G1171900 Malus domestica HOM05D004241 ORTHO05D006031 7.4e-15 84.0 122 45.1
Os05g0349700 Oryza sativa ssp. japonica HOM05D004241 ORTHO05D006031 7.4e-15 84.0 122 44.3
PSO801G0614 Papaver somniferum HOM05D004241 ORTHO05D006031 7.4e-15 84.0 122 43.4
TAR636G3470 Trochodendron aralioides HOM05D004241 ORTHO05D006031 7.4e-15 84.0 122 44.3
HPP92_013785 Vanilla planifolia HOM05D004241 ORTHO05D006031 7.4e-15 84.0 122 44.3
Atru.chr8.2269 Acer truncatum HOM05D004241 ORTHO05D006031 9.7e-15 83.6 122 45.1
CSS0018345 Camellia sinensis var. sinensis HOM05D004241 ORTHO05D006031 9.7e-15 83.6 122 45.1
CANSAT35G0589 Cannabis sativa HOM05D004241 ORTHO05D006031 9.7e-15 83.6 122 45.1
MELO3C026000.2 Cucumis melo HOM05D004241 ORTHO05D006031 9.7e-15 83.6 122 45.1
DCAR_015394 Daucus carota HOM05D004241 ORTHO05D006031 9.7e-15 83.6 122 45.1
Dinv01710 Davidia involucrata HOM05D004241 ORTHO05D006031 9.7e-15 83.6 122 44.3
Lj3A950T42 Lonicera japonica HOM05D004241 ORTHO05D006031 9.7e-15 83.6 121 46.3
Nn2g13169 Nelumbo nucifera HOM05D004241 ORTHO05D006031 9.7e-15 83.6 122 44.3
Sabra06G0078400 Salix brachista HOM05D004241 ORTHO05D006031 9.7e-15 83.6 122 44.3
THA.LOC104805975 Tarenaya hassleriana HOM05D004241 ORTHO05D006031 9.7e-15 83.6 122 44.3
GSVIVG01011187001 Vitis vinifera HOM05D004241 ORTHO05D006031 9.7e-15 83.6 122 45.1
A01p23250 Brassica napus HOM05D003030 ORTHO05D006031 1.3e-14 83.2 148 41.2
Dinv04461 Davidia involucrata HOM05D004241 ORTHO05D006031 1.3e-14 83.2 122 43.4
Dinv05780 Davidia involucrata HOM05D004241 ORTHO05D006031 1.3e-14 83.2 122 43.4
Migut.J00141 Erythranthe guttata HOM05D004241 ORTHO05D006031 1.3e-14 83.2 122 44.3
Eucgr.A00535 Eucalyptus grandis HOM05D004241 ORTHO05D006031 1.3e-14 83.2 122 44.3
HanXRQChr06g0182231 Helianthus annuus HOM05D004241 ORTHO05D006031 1.3e-14 83.2 122 45.1
Lalb_Chr19g0124421 Lupinus albus HOM05D004241 ORTHO05D006031 1.3e-14 83.2 122 44.3
MD00G1061800 Malus domestica HOM05D004241 ORTHO05D006031 1.3e-14 83.2 122 45.1
Nn2g10892 Nelumbo nucifera HOM05D004241 ORTHO05D006031 1.3e-14 83.2 122 44.3
PSO339G5814 Papaver somniferum HOM05D004241 ORTHO05D006031 1.3e-14 83.2 122 43.4
Potri.006G102100 Populus trichocarpa HOM05D004241 ORTHO05D006031 1.3e-14 83.2 122 43.4
Sed0025380 Sechium edule HOM05D004241 ORTHO05D006031 1.3e-14 83.2 122 45.1
TPR.G35446 Trifolium pratense HOM05D004241 ORTHO05D006031 1.3e-14 83.2 122 45.1
TAR633G2528 Trochodendron aralioides HOM05D004241 ORTHO05D006031 1.3e-14 83.2 122 44.3
arahy.Tifrunner.gnm1.ann1.Z8S8NK Arachis hypogaea HOM05D004241 ORTHO05D006031 1.7e-14 82.8 142 40.1
Lj1g0026131 Lotus japonicus HOM05D004241 ORTHO05D006031 1.7e-14 82.8 122 44.3
QL07p035079 Quercus lobata HOM05D004241 ORTHO05D006031 1.7e-14 82.8 124 44.4
RcHm_v2.0_Chr3g0462631 Rosa chinensis HOM05D004241 ORTHO05D006031 1.7e-14 82.8 122 44.3
SEGI_30165 Sequoiadendron giganteum HOM05D004241 ORTHO05D006031 1.7e-14 82.8 122 42.6
Thecc.05G012600 Theobroma cacao HOM05D004241 ORTHO05D006031 1.7e-14 82.8 122 44.3
Ciclev10011985m.g Citrus clementina HOM05D004241 ORTHO05D006031 2.2e-14 82.4 122 45.1
Oeu017800.1 Olea europaea HOM05D004241 ORTHO05D006031 2.2e-14 82.4 122 43.4
Prupe.6G280100 Prunus persica HOM05D004241 ORTHO05D006031 2.2e-14 82.4 122 44.3
Hund14874 Selenicereus undatus HOM05D004241 ORTHO05D006031 2.2e-14 82.4 122 42.6
arahy.Tifrunner.gnm1.ann1.8A66NB Arachis hypogaea HOM05D004241 ORTHO05D006031 2.8e-14 82.0 122 43.4
C01p28890 Brassica napus HOM05D003030 ORTHO05D006031 2.8e-14 82.0 148 40.5
CiPaw.09G211300 Carya illinoinensis HOM05D004241 ORTHO05D006031 2.8e-14 82.0 120 45.0
CiPaw.10G157700 Carya illinoinensis HOM05D004241 ORTHO05D006031 2.8e-14 82.0 122 43.4
Oeu038754.1 Olea europaea HOM05D004241 ORTHO05D006031 2.8e-14 82.0 121 43.8
ECA236G0379 Erigeron canadensis HOM05D000031 ORTHO05D006031 3.7e-14 81.6 122 44.3
Gohir.A04G092900 Gossypium hirsutum HOM05D004241 ORTHO05D006031 3.7e-14 81.6 122 42.6
Gohir.D04G132200 Gossypium hirsutum HOM05D004241 ORTHO05D006031 3.7e-14 81.6 122 42.6
vmacro08889 Vaccinium macrocarpon HOM05D004241 ORTHO05D006031 3.7e-14 81.6 134 41.0
MSTRG.18996 Avicennia marina HOM05D004241 ORTHO05D006031 4.8e-14 81.3 122 43.4
Glyma.18G203400 Glycine max HOM05D004241 ORTHO05D006031 4.8e-14 81.3 122 43.4
Gorai.012G116000 Gossypium raimondii HOM05D004241 ORTHO05D006031 4.8e-14 81.3 123 42.3
FAN02G4369 Fragaria x ananassa HOM05D004241 ORTHO05D006031 6.3e-14 80.9 122 43.4
FAN05G3727 Fragaria x ananassa HOM05D004241 ORTHO05D006031 6.3e-14 80.9 122 43.4
FAN09G0733 Fragaria x ananassa HOM05D004241 ORTHO05D006031 6.3e-14 80.9 122 43.4
Glyma.07G152300 Glycine max HOM05D004241 ORTHO05D006031 6.3e-14 80.9 122 43.4
Ah.12g058810 Amaranthus hybridus HOM05D004241 ORTHO05D006031 8.2e-14 80.5 121 43.0
FvH4_6g11190 Fragaria vesca HOM05D004241 ORTHO05D006031 8.2e-14 80.5 122 43.4
FAN14G2181 Fragaria x ananassa HOM05D004241 ORTHO05D006031 8.2e-14 80.5 122 43.4
Glyma.16G098000 Glycine max HOM05D004241 ORTHO05D006031 8.2e-14 80.5 122 42.6
Potri.016G119400 Populus trichocarpa HOM05D004241 ORTHO05D006031 8.2e-14 80.5 122 42.6
Rhsim04G0126500 Rhododendron simsii HOM05D004241 ORTHO05D006031 8.2e-14 80.5 122 42.6
ATR0681G392 Amborella trichopoda HOM05D004241 ORTHO05D006031 1.1e-13 80.1 122 42.6
unitig_578.g15901 Utricularia gibba HOM05D004241 ORTHO05D006031 1.1e-13 80.1 122 41.8
Lsat_1_v5_gn_8_101501 Lactuca sativa HOM05D004241 ORTHO05D006031 1.4e-13 79.7 122 42.6
Phvul.008G096500 Phaseolus vulgaris HOM05D004241 ORTHO05D006031 1.4e-13 79.7 122 41.8
Sabra16G0115300 Salix brachista HOM05D004241 ORTHO05D006031 1.4e-13 79.7 121 43.0
VMungo1383G0980 Vigna mungo HOM05D004241 ORTHO05D006031 1.4e-13 79.7 122 41.8
SMO271G0089 Selaginella moellendorffii HOM05D004241 ORTHO05D006031 4.1e-13 78.2 122 41.0
AagrBONN_evm.TU.Sc2ySwM_228.1146 Anthoceros agrestis HOM05D004241 ORTHO05D006031 3.5e-12 75.1 134 39.6
PSO339G4053 Papaver somniferum HOM05D004241 ORTHO05D006031 3.5e-12 75.1 133 39.1
Mapoly0045s0080 Marchantia polymorpha HOM05D004241 ORTHO05D006031 7.7e-12 73.9 134 38.1
Cre06.g294750 Chlamydomonas reinhardtii HOM05D004241 ORTHO05D006031 1.0e-11 73.6 122 40.2
Lj2C71T11 Lonicera japonica HOM05D004241 ORTHO05D006031 1.3e-11 73.2 135 38.5
Pp3c13_13830 Physcomitrium patens HOM05D004241 ORTHO05D006031 1.3e-11 73.2 129 38.8
arahy.Tifrunner.gnm1.ann1.F5Z0S5 Arachis hypogaea HOM05D004241 ORTHO05D006031 2.2e-11 72.4 121 38.8
PSO384G4055 Papaver somniferum HOM05D004241 ORTHO05D006031 2.9e-11 72.0 133 38.3
Aqoxy4G02498 Aquilegia oxysepala HOM05D004241 ORTHO05D006031 5.0e-11 71.2 122 36.9
arahy.Tifrunner.gnm1.ann1.YJ5G8U Arachis hypogaea HOM05D004241 ORTHO05D006031 1.9e-10 69.3 127 36.2
arahy.Tifrunner.gnm1.ann1.IR2XKV Arachis hypogaea HOM05D004241 ORTHO05D006031 3.2e-10 68.6 92 47.8
Haze_21025 Corylus avellana HOM05D004241 ORTHO05D006031 2.1e-09 65.9 172 33.1
arahy.Tifrunner.gnm1.ann1.X8HB46 Arachis hypogaea HOM05D004241 ORTHO05D026893 8.8e-08 60.5 105 40.0
CDE04G2983 Ceratophyllum demersum HOM05D004241 ORTHO05D006031 8.8e-08 60.5 111 36.9
AUR62030480 Chenopodium quinoa HOM05D004241 ORTHO05D006031 8.8e-08 60.5 60 55.0
MCO16G058 Micromonas commoda HOM05D004241 ORTHO05D006031 8.8e-08 60.5 120 36.7
SalBow5G3053 Salvia bowleyana HOM05D004241 ORTHO05D006031 1.1e-07 60.1 115 37.4
COL.COLO4_03385 Corchorus olitorius HOM05D004241 ORTHO05D006031 2.0e-07 59.3 60 56.7
FAN14G4537 Fragaria x ananassa HOM05D004241 ORTHO05D006031 2.0e-07 59.3 60 58.3
PRCOL_00003234 Prasinoderma coloniale HOM05D004241 ORTHO05D006031 1.7e-06 56.2 123 34.1
Duzib093G0784 Durio zibethinus HOM05D004241 ORTHO05D006031 2.2e-06 55.8 60 53.3


User provided reference genes

Program Settings