Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 4.4e-164 581.3 301 100.0
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 4.4e-164 581.3 301 100.0
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 1.5e-135 486.5 336 80.1
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 1.5e-135 486.5 336 80.1
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 5.8e-132 474.6 336 78.3
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 4.3e-119 431.8 313 79.2
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 6.1e-89 331.6 333 63.1
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 9.5e-74 281.2 340 57.4
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 4.4e-71 272.3 328 54.6
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 5.4e-69 265.4 322 56.8
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 1.3e-67 260.8 330 54.5
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 6.8e-64 248.4 361 48.2
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 4.9e-62 242.3 359 47.4
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 8.3e-62 241.5 304 53.3
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 8.3e-62 241.5 314 53.8
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 1.4e-61 240.7 314 52.5
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 1.9e-61 240.4 308 55.2
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 1.9e-61 240.4 308 55.2
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 1.9e-61 240.4 308 55.2
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 6.0e-52 208.8 373 43.2
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 6.6e-43 178.7 320 44.7
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 3.4e-39 166.4 316 38.6
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.1e-37 161.4 340 38.8
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 3.2e-37 159.8 265 45.3
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 3.5e-36 156.4 360 36.9
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 1.3e-35 154.5 359 34.0
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 1.7e-35 154.1 143 58.0
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 3.9e-35 152.9 338 38.5
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 5.1e-35 152.5 318 36.5
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 6.6e-35 152.1 318 36.2
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.1e-34 151.4 318 35.8
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 1.9e-34 150.6 318 35.8
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 3.3e-34 149.8 337 36.8
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 1.2e-33 147.9 365 32.9
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 1.6e-33 147.5 321 35.2
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 4.7e-33 146.0 151 52.3
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 4.7e-33 146.0 329 35.9
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 1.1e-32 144.8 328 36.3
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 1.1e-32 144.8 306 34.3
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 1.8e-32 144.1 334 34.4
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 2.4e-32 143.7 316 34.8
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 2.4e-32 143.7 325 35.7
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 4.0e-32 142.9 354 34.7
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 9.0e-32 141.7 149 52.3
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 1.2e-31 141.4 333 35.4
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 1.5e-31 141.0 358 33.0
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 1.5e-31 141.0 340 36.8
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 2.0e-31 140.6 331 34.1
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 2.0e-31 140.6 153 54.2
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 3.4e-31 139.8 324 34.9
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 4.4e-31 139.4 324 35.2
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 4.4e-31 139.4 332 34.6
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 7.6e-31 138.7 153 52.9
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 7.6e-31 138.7 341 35.5
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.3e-30 137.9 334 34.7
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 1.3e-30 137.9 388 33.5
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 1.3e-30 137.9 134 54.5
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 2.2e-30 137.1 151 52.3
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.9e-30 136.7 163 47.9
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 3.8e-30 136.3 153 52.3
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 6.4e-30 135.6 284 36.3
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 6.4e-30 135.6 143 53.1
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 8.4e-30 135.2 334 34.4
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 8.4e-30 135.2 344 35.5
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 1.1e-29 134.8 322 34.8
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.4e-29 134.4 227 41.0
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 1.4e-29 134.4 351 35.0
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 1.9e-29 134.0 197 42.1
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.9e-29 134.0 329 35.6
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 2.4e-29 133.7 277 35.4
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 2.4e-29 133.7 368 32.3
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 3.2e-29 133.3 188 45.7
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 4.2e-29 132.9 298 33.9
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 5.4e-29 132.5 285 35.1
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 7.1e-29 132.1 340 32.6
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 7.1e-29 132.1 227 40.5
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 7.1e-29 132.1 163 46.6
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 7.1e-29 132.1 159 48.4
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 9.3e-29 131.7 325 35.7
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.2e-28 131.3 214 39.7
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 1.6e-28 131.0 225 40.0
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 1.6e-28 131.0 343 33.2
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 1.6e-28 131.0 145 49.7
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 2.1e-28 130.6 400 32.0
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 2.7e-28 130.2 168 46.4
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 2.7e-28 130.2 136 52.2
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 4.6e-28 129.4 174 47.7
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 4.6e-28 129.4 127 54.3
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 6.0e-28 129.0 311 36.0
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 6.0e-28 129.0 285 35.8
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 6.0e-28 129.0 231 40.3
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 7.8e-28 128.6 323 34.7
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 7.8e-28 128.6 367 32.7
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 7.8e-28 128.6 367 32.7
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 7.8e-28 128.6 346 33.5
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.0e-27 128.3 295 35.3
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.3e-27 127.9 113 59.3
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 2.3e-27 127.1 356 32.3
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 3.0e-27 126.7 367 32.2
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 3.0e-27 126.7 237 36.7
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 5.1e-27 125.9 278 33.5
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 6.6e-27 125.6 152 48.0
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 8.7e-27 125.2 118 54.2
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.1e-26 124.8 215 40.5
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.1e-26 124.8 166 48.8
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.5e-26 124.4 172 44.2
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.5e-26 123.6 270 34.4
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 4.3e-26 122.9 367 30.2
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 7.3e-26 122.1 162 46.3
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 7.3e-26 122.1 175 47.4
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 9.6e-26 121.7 322 34.5
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 1.6e-25 120.9 311 32.2
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 1.6e-25 120.9 320 32.8
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 1.6e-25 120.9 401 28.9
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 2.1e-25 120.6 158 46.8
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 3.6e-25 119.8 284 35.6
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 3.1e-24 116.7 317 34.1
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 4.0e-24 116.3 330 33.6
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 5.3e-24 115.9 100 60.0
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 5.3e-24 115.9 110 52.7
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 9.0e-24 115.2 100 60.0
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 9.0e-24 115.2 160 43.1
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 1.5e-23 114.4 217 35.9
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 1.5e-23 114.4 126 54.8
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 1.5e-23 114.4 126 54.8
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.3e-22 111.3 256 33.2
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.7e-22 110.9 229 34.5
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 6.4e-22 109.0 114 52.6
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 6.4e-22 109.0 114 52.6
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 8.4e-22 108.6 324 34.0
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 8.4e-22 108.6 193 43.0
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 8.4e-22 108.6 193 43.0
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 8.4e-22 108.6 106 54.7
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 2.4e-21 107.1 131 46.6
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 2.4e-21 107.1 131 46.6
BcaC07g37962 Brassica carinata HOM05D003874 ORTHO05D004545 2.4e-21 107.1 146 50.0
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 3.2e-21 106.7 193 42.5
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 2.1e-20 104.0 113 49.6
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 3.5e-20 103.2 194 35.1
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 4.6e-20 102.8 174 43.7
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 1.8e-19 100.9 308 32.5
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 2.3e-19 100.5 306 29.4
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 6.7e-19 99.0 108 49.1
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 1.1e-18 98.2 302 29.8
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 1.9e-18 97.4 320 29.7
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 2.5e-18 97.1 139 41.0
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 2.5e-18 97.1 154 41.6
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 7.4e-18 95.5 157 40.8
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 9.6e-18 95.1 111 46.8
BolC1t02621H Brassica oleracea HOM05D000032 ORTHO05D024508 3.7e-17 93.2 126 48.4
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 8.1e-17 92.0 305 29.2
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 1.1e-16 91.7 166 38.6
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.4e-16 91.3 73 67.1
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 2.4e-16 90.5 105 39.0
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 6.9e-16 89.0 73 65.8
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 1.2e-15 88.2 114 45.6
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 4.5e-15 86.3 108 45.4
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 4.5e-15 86.3 160 37.5
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 1.3e-14 84.7 270 32.6
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 1.3e-14 84.7 270 32.6
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 1.7e-14 84.3 153 36.6
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 2.9e-14 83.6 117 41.9
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 3.8e-14 83.2 305 28.5
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.4e-13 81.3 117 40.2
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 1.4e-13 81.3 150 37.3
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 5.5e-13 79.3 85 43.5
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 4.3e-10 69.7 164 35.4
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 7.4e-10 68.9 442 24.7
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 3.7e-09 66.6 151 33.1
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 4.5e-07 59.7 43 74.4


User provided reference genes

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