Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p26040 Brassica napus HOM05D005104 ORTHO05D006614 1.6e-52 209.1 105 100.0
C06p26800 Brassica napus HOM05D005104 ORTHO05D006614 1.7e-38 162.5 90 93.3
BolC6t37855H Brassica oleracea HOM05D005104 ORTHO05D006614 5.0e-38 161.0 90 92.2
C09p58340 Brassica napus HOM05D005104 ORTHO05D006614 1.1e-37 159.8 90 91.1
BolC9t58698H Brassica oleracea HOM05D005104 ORTHO05D006614 1.1e-37 159.8 90 91.1
BcaC08g45071 Brassica carinata HOM05D005104 ORTHO05D006614 2.5e-37 158.7 90 91.1
C09p58390 Brassica napus HOM05D005104 ORTHO05D006614 5.5e-37 157.5 90 91.1
BraA03t13815Z Brassica rapa HOM05D005104 ORTHO05D006614 7.2e-37 157.1 90 91.1
BcaC02g09479 Brassica carinata HOM05D002012 ORTHO05D001992 1.8e-35 152.5 90 91.1
C02p46090 Brassica napus HOM05D005104 ORTHO05D006614 5.1e-35 151.0 88 88.6
BcaB07g29727 Brassica carinata HOM05D005104 ORTHO05D006614 9.7e-34 146.7 90 87.8
A06p30880 Brassica napus HOM05D005104 ORTHO05D006614 1.8e-32 142.5 90 87.8
BolC3t18470H Brassica oleracea HOM05D005104 ORTHO05D006614 4.1e-32 141.4 90 87.8
C03p62090 Brassica napus HOM05D005104 ORTHO05D006614 1.6e-31 139.4 90 86.7
BcaC01g02673 Brassica carinata HOM05D005104 ORTHO05D006614 3.5e-31 138.3 90 86.7
BcaB02g09781 Brassica carinata HOM05D005104 ORTHO05D006614 7.7e-31 137.1 90 85.6
Sp2g27220 Schrenkiella parvula HOM05D005104 ORTHO05D006614 2.9e-30 135.2 90 82.2
AL8G41430 Arabidopsis lyrata HOM05D005104 ORTHO05D006614 3.2e-29 131.7 90 80.0
AT5G64160 Arabidopsis thaliana HOM05D005104 ORTHO05D006614 5.5e-29 131.0 90 80.0
Thhalv10004872m.g Eutrema salsugineum HOM05D005104 ORTHO05D006614 3.6e-28 128.3 90 78.9
Carub.0008s2495 Capsella rubella HOM05D005104 ORTHO05D006614 4.0e-27 124.8 90 76.7
CARHR278070 Cardamine hirsuta HOM05D005104 ORTHO05D006614 6.7e-27 124.0 90 77.8
Aa31LG1G17770 Aethionema arabicum HOM05D005104 ORTHO05D006614 1.5e-26 122.9 90 77.8
THA.LOC104818435 Tarenaya hassleriana HOM05D005104 ORTHO05D006614 5.3e-24 114.4 91 72.5
Manes.14G166400 Manihot esculenta HOM05D005104 ORTHO05D006614 2.0e-15 85.9 98 54.1
TWI59G0245 Tripterygium wilfordii HOM05D005104 ORTHO05D006614 2.0e-15 85.9 96 51.0
C07p45690 Brassica napus HOM05D005104 ORTHO05D021970 5.9e-15 84.3 93 54.8
Thecc.02G140100 Theobroma cacao HOM05D005104 ORTHO05D006614 5.9e-15 84.3 102 52.9
Atru.chr6.1089 Acer truncatum HOM05D005104 ORTHO05D006614 1.7e-14 82.8 97 52.6
Atru.chr6.1109 Acer truncatum HOM05D005104 ORTHO05D006614 1.7e-14 82.8 97 52.6
C09p03790 Brassica napus HOM05D005104 ORTHO05D006614 2.2e-14 82.4 93 53.8
arahy.Tifrunner.gnm1.ann1.V9NXIE Arachis hypogaea HOM05D005104 ORTHO05D006614 5.0e-14 81.3 100 54.0
CANSAT11G2657 Cannabis sativa HOM05D005104 ORTHO05D006614 6.5e-14 80.9 99 51.5
Eucgr.I02668 Eucalyptus grandis HOM05D005104 ORTHO05D006614 6.5e-14 80.9 99 52.5
Glyma.08G073500 Glycine max HOM05D005104 ORTHO05D006614 6.5e-14 80.9 99 52.5
arahy.Tifrunner.gnm1.ann1.PH7E5N Arachis hypogaea HOM05D005104 ORTHO05D006614 1.1e-13 80.1 98 51.0
Dinv24198 Davidia involucrata HOM05D005104 ORTHO05D006614 1.5e-13 79.7 107 50.5
Phvul.002G208000 Phaseolus vulgaris HOM05D005104 ORTHO05D006614 1.5e-13 79.7 97 48.5
VMungo0251G0802 Vigna mungo HOM05D005104 ORTHO05D006614 2.5e-13 79.0 97 50.5
C05p26840 Brassica napus HOM05D005104 ORTHO05D006614 3.2e-13 78.6 93 52.7
CSS0037720 Camellia sinensis var. sinensis HOM05D005104 ORTHO05D006614 3.2e-13 78.6 106 48.1
PGR142G2776 Punica granatum HOM05D005104 ORTHO05D006614 4.2e-13 78.2 99 48.5
Ciclev10029197m.g Citrus clementina HOM05D005104 ORTHO05D006614 7.2e-13 77.4 95 48.4
Duzib248G0158 Durio zibethinus HOM05D005104 ORTHO05D006614 7.2e-13 77.4 102 50.0
C03p52730 Brassica napus HOM05D005104 ORTHO05D021970 3.6e-12 75.1 96 50.0
CiPaw.05G036500 Carya illinoinensis HOM05D005104 ORTHO05D006614 3.6e-12 75.1 101 50.5
Gohir.D04G154400 Gossypium hirsutum HOM05D005104 ORTHO05D006614 3.6e-12 75.1 100 48.0
Gorai.012G141700 Gossypium raimondii HOM05D005104 ORTHO05D006614 3.6e-12 75.1 100 48.0
GSVIVG01003083001 Vitis vinifera HOM05D005104 ORTHO05D006614 3.6e-12 75.1 103 47.6
BolC6t38485H Brassica oleracea HOM05D005104 ORTHO05D006614 4.7e-12 74.7 64 65.6
Gohir.A04G112960 Gossypium hirsutum HOM05D005104 ORTHO05D006614 6.1e-12 74.3 98 50.0
Gohir.A04G113100 Gossypium hirsutum HOM05D005104 ORTHO05D006614 6.1e-12 74.3 98 50.0
Actinidia28058 Actinidia chinensis HOM05D005104 ORTHO05D006614 1.0e-11 73.6 107 44.9
Haze_10684 Corylus avellana HOM05D005104 ORTHO05D006614 1.4e-11 73.2 101 51.5
DCAR_001791 Daucus carota HOM05D005104 ORTHO05D006614 1.8e-11 72.8 101 45.5
Glyma.05G118400 Glycine max HOM05D005104 ORTHO05D006614 1.8e-11 72.8 98 48.0
Sed0008592 Sechium edule HOM05D005104 ORTHO05D006614 2.3e-11 72.4 101 45.5
MELO3C018651.2 Cucumis melo HOM05D005104 ORTHO05D006614 3.0e-11 72.0 101 48.5
CsaV3_7G006430 Cucumis sativus L. HOM05D005104 ORTHO05D006614 3.0e-11 72.0 103 47.6
RcHm_v2.0_Chr6g0273461 Rosa chinensis HOM05D005104 ORTHO05D006614 3.0e-11 72.0 97 49.5
Ca_18345_v3 Cicer arietinum L. HOM05D005104 ORTHO05D006614 4.0e-11 71.6 99 50.5
COL.COLO4_20953 Corchorus olitorius HOM05D005104 ORTHO05D006614 4.0e-11 71.6 99 48.5
TPR.G10460 Trifolium pratense HOM05D005104 ORTHO05D006614 4.0e-11 71.6 97 53.6
Cfa005608 Carpinus fangiana HOM05D005104 ORTHO05D006614 5.2e-11 71.2 104 49.0
Hma1.2p1_0522F.1_g171590 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 5.2e-11 71.2 106 44.3
Hma1.2p1_0522F.1_g171600 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 5.2e-11 71.2 106 44.3
Rhsim05G0108500 Rhododendron simsii HOM05D005104 ORTHO05D006614 5.2e-11 71.2 106 45.3
Peaxi162Scf00003g03543 Petunia axillaris HOM05D005104 ORTHO05D006614 8.8e-11 70.5 101 45.5
Cpa.g.sc42.74 Carica papaya HOM05D005104 ORTHO05D006614 1.2e-10 70.1 97 44.3
Prupe.8G062400 Prunus persica HOM05D005104 ORTHO05D006614 1.2e-10 70.1 97 45.4
Lalb_Chr10g0097741 Lupinus albus HOM05D005104 ORTHO05D006614 2.0e-10 69.3 103 47.6
MD10G1051500 Malus domestica HOM05D005104 ORTHO05D006614 2.0e-10 69.3 101 47.5
Psat7g098720 Pisum sativum HOM05D005104 ORTHO05D006614 2.0e-10 69.3 97 49.5
FvH4_2g12710 Fragaria vesca HOM05D005104 ORTHO05D006614 2.6e-10 68.9 96 45.8
Aqoxy6G00597 Aquilegia oxysepala HOM05D005104 ORTHO05D006614 3.4e-10 68.6 104 45.2
Lj4g0020611 Lotus japonicus HOM05D005104 ORTHO05D006614 3.4e-10 68.6 100 47.0
Migut.N01063 Erythranthe guttata HOM05D005104 ORTHO05D006614 7.5e-10 67.4 92 47.8
TAR628G1132 Trochodendron aralioides HOM05D005104 ORTHO05D006614 9.8e-10 67.0 105 44.8
SalBow6G6009 Salvia bowleyana HOM05D005104 ORTHO05D006614 1.3e-09 66.6 101 44.6
SalBow6G6298 Salvia bowleyana HOM05D005104 ORTHO05D006614 1.3e-09 66.6 101 44.6
Medtr4g094252 Medicago truncatula HOM05D005104 ORTHO05D006614 1.7e-09 66.2 97 48.5
A10p06060 Brassica napus HOM05D005104 ORTHO05D006614 2.2e-09 65.9 65 61.5
Lsat_1_v5_gn_5_107140 Lactuca sativa HOM05D005104 ORTHO05D006614 2.2e-09 65.9 92 42.4
QL11p020542 Quercus lobata HOM05D005104 ORTHO05D006614 2.2e-09 65.9 56 66.1
FAN27G3119 Fragaria x ananassa HOM05D005104 ORTHO05D006614 2.8e-09 65.5 96 44.8
unitig_22.g6836 Utricularia gibba HOM05D001058 ORTHO05D000911 4.9e-09 64.7 99 44.4
vmacro19925 Vaccinium macrocarpon HOM05D005104 ORTHO05D006614 8.3e-09 63.9 142 38.7
HanXRQChr10g0295831 Helianthus annuus HOM05D005104 ORTHO05D006614 1.4e-08 63.2 96 42.7
SGA_v2.0_scaffold45G17311 Striga asiatica HOM05D005104 ORTHO05D006614 1.8e-08 62.8 100 38.0
MSTRG.27791 Avicennia marina HOM05D005104 ORTHO05D006614 2.4e-08 62.4 98 42.9
Oeu007957.1 Olea europaea HOM05D005104 ORTHO05D006614 2.4e-08 62.4 101 43.6
Potri.001G206032 Populus trichocarpa HOM05D005104 ORTHO05D006614 2.4e-08 62.4 57 64.9
Nn1g05321 Nelumbo nucifera HOM05D005104 ORTHO05D006614 5.4e-08 61.2 103 43.7
FAN20G1981 Fragaria x ananassa HOM05D005104 ORTHO05D006614 7.0e-08 60.8 95 43.2
Sabra01G0157800 Salix brachista HOM05D005104 ORTHO05D006614 7.0e-08 60.8 103 45.6
PGSC0003DMG400017693 Solanum tuberosum HOM05D005104 ORTHO05D006614 9.2e-08 60.5 101 39.6
ClCG09G015340 Citrullus lanatus HOM05D005104 ORTHO05D006614 1.2e-07 60.1 120 40.0
Solyc10g047220.2 Solanum lycopersicum HOM05D005104 ORTHO05D006614 1.2e-07 60.1 101 38.6
Sopen10g017460 Solanum pennellii HOM05D005104 ORTHO05D006614 1.2e-07 60.1 101 38.6
Lj5A240T40 Lonicera japonica HOM05D005104 ORTHO05D006614 1.6e-07 59.7 61 55.7
Oeu026158.1 Olea europaea HOM05D005104 ORTHO05D006614 1.6e-07 59.7 99 43.4
ATR0564G397 Amborella trichopoda HOM05D005104 ORTHO05D006614 2.7e-07 58.9 102 42.2
HPP92_006000 Vanilla planifolia HOM05D005104 ORTHO05D006614 2.7e-07 58.9 92 43.5
Potri.003G023601 Populus trichocarpa HOM05D005104 ORTHO05D006614 3.5e-07 58.5 107 41.1
PSO781G0266 Papaver somniferum HOM05D005104 ORTHO05D006614 4.5e-07 58.2 108 40.7
FAN24G3378 Fragaria x ananassa HOM05D005104 ORTHO05D006614 5.9e-07 57.8 57 54.4
Cc02_g21630 Coffea canephora HOM05D005104 ORTHO05D006614 1.3e-06 56.6 96 41.7
GSVIVG01003087001 Vitis vinifera HOM05D005104 ORTHO05D006614 2.9e-06 55.5 64 53.1
GSVIVG01013334001 Vitis vinifera HOM05D005104 ORTHO05D006614 2.9e-06 55.5 64 53.1
Nitab4.5_0005015g0050 Nicotiana tabacum HOM05D005104 ORTHO05D006614 3.8e-06 55.1 80 42.5
PSO541G4381 Papaver somniferum HOM05D005104 ORTHO05D006614 3.8e-06 55.1 108 39.8
Duzib132G1169 Durio zibethinus HOM05D005104 ORTHO05D006614 5.0e-06 54.7 67 50.7


User provided reference genes

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