Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p25990 Brassica napus HOM05D005805 ORTHO05D007226 4.7e-181 637.9 359 100.0
BraA02t07597Z Brassica rapa HOM05D005805 ORTHO05D007226 4.7e-181 637.9 359 100.0
BraA09t38298Z Brassica rapa HOM05D005805 ORTHO05D007226 6.9e-148 527.7 395 79.7
BcaB05g23807 Brassica carinata HOM05D005805 ORTHO05D007226 2.2e-146 522.7 392 78.8
BolC9t56310H Brassica oleracea HOM05D005805 ORTHO05D007226 6.5e-146 521.2 395 79.5
C09p34650 Brassica napus HOM05D005805 ORTHO05D007226 1.3e-141 506.9 421 74.6
A09p27320 Brassica napus HOM05D005805 ORTHO05D007226 5.3e-140 501.5 421 73.9
Thhalv10028709m.g Eutrema salsugineum HOM05D005805 ORTHO05D007226 3.4e-139 498.8 400 76.5
BcaC03g16328 Brassica carinata HOM05D005805 ORTHO05D007226 2.8e-133 479.2 304 93.1
AL6G46500 Arabidopsis lyrata HOM05D005805 ORTHO05D007226 3.5e-131 472.2 431 70.1
CARHR254520 Cardamine hirsuta HOM05D005805 ORTHO05D007226 8.0e-128 461.1 402 68.7
Carub.0006s3090 Capsella rubella HOM05D005805 ORTHO05D007226 3.0e-127 459.1 433 67.2
Sp6g05660 Schrenkiella parvula HOM05D005805 ORTHO05D007226 5.7e-126 454.9 395 70.6
C02p41470 Brassica napus HOM05D005805 ORTHO05D007226 1.3e-125 453.8 362 78.7
Aa31LG9G10640 Aethionema arabicum HOM05D005805 ORTHO05D007226 9.1e-124 447.6 401 70.3
AT4G11790 Arabidopsis thaliana HOM05D005805 ORTHO05D007226 2.2e-117 426.4 449 62.8
THA.LOC104806368 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 9.4e-113 411.0 418 64.4
BcaB01g01678 Brassica carinata HOM05D005805 ORTHO05D007226 2.6e-110 402.9 372 64.2
THA.LOC104814292 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 2.6e-110 402.9 408 61.3
Eucgr.D01927 Eucalyptus grandis HOM05D005805 ORTHO05D007226 4.7e-88 328.9 387 51.9
CiPaw.11G141700 Carya illinoinensis HOM05D005805 ORTHO05D007226 5.2e-87 325.5 449 49.4
CSS0001301 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 9.8e-86 321.2 380 50.5
Ca_06662_v3 Cicer arietinum L. HOM05D005805 ORTHO05D007226 9.8e-86 321.2 383 50.1
CSS0012055 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 3.7e-85 319.3 377 50.9
HanXRQChr02g0048701 Helianthus annuus HOM05D005805 ORTHO05D007226 1.4e-84 317.4 368 51.9
CiPaw.12G099000 Carya illinoinensis HOM05D005805 ORTHO05D007226 5.4e-84 315.5 456 48.5
Dinv39015 Davidia involucrata HOM05D005805 ORTHO05D007226 5.4e-84 315.5 328 54.6
Lsat_1_v5_gn_6_12941 Lactuca sativa HOM05D005805 ORTHO05D007226 9.2e-84 314.7 373 50.9
GSVIVG01019866001 Vitis vinifera HOM05D005805 ORTHO05D007226 1.6e-83 313.9 384 49.2
VMungo1215G3124 Vigna mungo HOM05D005805 ORTHO05D007226 3.5e-83 312.8 379 50.1
CAN.G981.40 Capsicum annuum HOM05D005805 ORTHO05D007226 6.0e-83 312.0 378 50.3
Duzib068G1011 Durio zibethinus HOM05D005805 ORTHO05D007226 6.0e-83 312.0 367 56.4
Nitab4.5_0001714g0200 Nicotiana tabacum HOM05D005805 ORTHO05D007226 1.0e-82 311.2 330 59.4
Sopen08g028610 Solanum pennellii HOM05D005805 ORTHO05D007226 1.0e-82 311.2 377 50.9
Actinidia02051 Actinidia chinensis HOM05D005805 ORTHO05D007226 1.3e-82 310.8 374 48.9
Actinidia14511 Actinidia chinensis HOM05D005805 ORTHO05D007226 1.3e-82 310.8 374 50.5
Lalb_Chr16g0379971 Lupinus albus HOM05D005805 ORTHO05D007226 1.3e-82 310.8 377 49.3
Cfa012095 Carpinus fangiana HOM05D005805 ORTHO05D007226 2.3e-82 310.1 479 48.2
Sed0020250 Sechium edule HOM05D005805 ORTHO05D007226 5.1e-82 308.9 384 49.5
Nitab4.5_0009882g0030 Nicotiana tabacum HOM05D005805 ORTHO05D007226 8.6e-82 308.1 382 53.7
Glyma.01G215800 Glycine max HOM05D005805 ORTHO05D007226 1.1e-81 307.8 385 55.1
PGR031G2899 Punica granatum HOM05D005805 ORTHO05D007226 2.5e-81 306.6 427 46.6
TAR375G0540 Trochodendron aralioides HOM05D005805 ORTHO05D007226 2.5e-81 306.6 387 48.1
Ciclev10020090m.g Citrus clementina HOM05D005805 ORTHO05D007226 3.3e-81 306.2 458 48.5
Phvul.002G153800 Phaseolus vulgaris HOM05D005805 ORTHO05D007226 4.3e-81 305.8 327 54.4
QL12p017075 Quercus lobata HOM05D005805 ORTHO05D007226 4.3e-81 305.8 447 49.4
TAR629G3121 Trochodendron aralioides HOM05D005805 ORTHO05D007226 9.5e-81 304.7 387 47.8
Potri.001G111100 Populus trichocarpa HOM05D005805 ORTHO05D007226 1.6e-80 303.9 468 49.4
Glyma.11G026600 Glycine max HOM05D005805 ORTHO05D007226 2.1e-80 303.5 392 47.4
Hma1.2p1_0371F.1_g138200 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 2.8e-80 303.1 341 51.3
arahy.Tifrunner.gnm1.ann1.8FZ8QS Arachis hypogaea HOM05D005805 ORTHO05D007226 4.7e-80 302.4 412 51.0
PGSC0003DMG400022755 Solanum tuberosum HOM05D005805 ORTHO05D007226 4.7e-80 302.4 328 54.6
vmacro00648 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 5.2e-79 298.9 352 50.0
Migut.A00918 Erythranthe guttata HOM05D005805 ORTHO05D007226 8.9e-79 298.1 383 51.2
Oeu031590.1 Olea europaea HOM05D005805 ORTHO05D007226 8.9e-79 298.1 340 50.3
Peaxi162Scf00620g00920 Petunia axillaris HOM05D005805 ORTHO05D007226 2.0e-78 297.0 353 49.6
Nn1g01331 Nelumbo nucifera HOM05D005805 ORTHO05D007226 3.4e-78 296.2 389 46.8
Potri.003G120900 Populus trichocarpa HOM05D005805 ORTHO05D007226 9.9e-78 294.7 476 46.0
Solyc08g080260.4 Solanum lycopersicum HOM05D005805 ORTHO05D007226 1.7e-77 293.9 384 49.0
Thecc.03G270600 Theobroma cacao HOM05D005805 ORTHO05D007226 2.2e-77 293.5 427 49.9
Medtr5g010950 Medicago truncatula HOM05D005805 ORTHO05D007226 2.9e-77 293.1 387 47.5
Lalb_Chr05g0214771 Lupinus albus HOM05D005805 ORTHO05D007226 8.3e-77 291.6 376 46.8
Gorai.003G162800 Gossypium raimondii HOM05D005805 ORTHO05D007226 1.4e-76 290.8 447 48.1
Gohir.D03G155100 Gossypium hirsutum HOM05D005805 ORTHO05D007226 2.4e-76 290.0 447 48.1
Gohir.A03G015238 Gossypium hirsutum HOM05D005805 ORTHO05D007226 5.4e-76 288.9 439 48.7
ECA233G3280 Erigeron canadensis HOM05D005805 ORTHO05D007226 1.2e-75 287.7 414 44.0
ClCG01G003160 Citrullus lanatus HOM05D005805 ORTHO05D007226 2.7e-75 286.6 422 44.1
TPR.G6662 Trifolium pratense HOM05D005805 ORTHO05D007226 2.7e-75 286.6 440 48.9
HanXRQChr07g0188541 Helianthus annuus HOM05D005805 ORTHO05D007226 7.8e-75 285.0 329 56.5
Cc08_g13930 Coffea canephora HOM05D005805 ORTHO05D007226 5.1e-74 282.3 388 45.1
MELO3C005626.2 Cucumis melo HOM05D005805 ORTHO05D007226 5.1e-74 282.3 366 48.6
MD04G1068600 Malus domestica HOM05D005805 ORTHO05D007226 6.6e-74 282.0 494 42.1
Psat2g181520 Pisum sativum HOM05D005805 ORTHO05D007226 1.5e-73 280.8 471 39.9
MD06G1071900 Malus domestica HOM05D005805 ORTHO05D007226 2.5e-73 280.0 495 44.4
Duzib084G0260 Durio zibethinus HOM05D005805 ORTHO05D007226 3.3e-73 279.6 445 48.1
FAN13G0947 Fragaria x ananassa HOM05D005805 ORTHO05D007226 1.2e-72 277.7 479 45.3
FAN04G0223 Fragaria x ananassa HOM05D005805 ORTHO05D007226 3.6e-72 276.2 488 45.1
FvH4_5g01420 Fragaria vesca HOM05D005805 ORTHO05D007226 8.1e-72 275.0 488 44.9
TWI81G0996 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 8.1e-72 275.0 466 45.7
Prupe.5G089600 Prunus persica HOM05D005805 ORTHO05D007226 1.8e-71 273.9 511 44.0
Sc01g0008800 Simmondsia chinensis HOM05D005805 ORTHO05D007226 2.4e-71 273.5 434 42.6
FAN08G1094 Fragaria x ananassa HOM05D005805 ORTHO05D007226 3.1e-71 273.1 497 43.9
FAN18G3929 Fragaria x ananassa HOM05D005805 ORTHO05D007226 6.8e-71 271.9 488 44.7
Gorai.004G207600 Gossypium raimondii HOM05D005805 ORTHO05D007226 1.5e-70 270.8 395 50.1
Aqoxy7G00467 Aquilegia oxysepala HOM05D005805 ORTHO05D007226 3.4e-70 269.6 329 47.1
CsaV3_5G003280 Cucumis sativus L. HOM05D005805 ORTHO05D007226 9.9e-70 268.1 305 52.1
Lj2g0007037 Lotus japonicus HOM05D005805 ORTHO05D007226 2.9e-69 266.5 480 42.9
Duzib205G1286 Durio zibethinus HOM05D005805 ORTHO05D007226 8.4e-69 265.0 430 47.4
MBI04_g40844_MAGBIO Magnolia biondii HOM05D005805 ORTHO05D007226 1.1e-68 264.6 382 43.2
Sed0020925 Sechium edule HOM05D005805 ORTHO05D007226 1.9e-68 263.8 314 52.2
Lj2A197T60 Lonicera japonica HOM05D005805 ORTHO05D007226 2.4e-68 263.5 374 45.2
CANSAT21G1670 Cannabis sativa HOM05D005805 ORTHO05D007226 4.2e-68 262.7 519 42.0
Sabra01G0084700 Salix brachista HOM05D005805 ORTHO05D007226 7.1e-68 261.9 493 42.4
Manes.01G068001 Manihot esculenta HOM05D005805 ORTHO05D007226 1.9e-65 253.8 389 48.8
AUR62017300 Chenopodium quinoa HOM05D005805 ORTHO05D007226 2.5e-65 253.4 439 46.0
TWI60G0251 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 2.5e-65 253.4 475 43.6
Dinv37696 Davidia involucrata HOM05D005805 ORTHO05D007226 9.6e-65 251.5 306 48.7
RcHm_v2.0_Chr7g0199441 Rosa chinensis HOM05D005805 ORTHO05D007226 9.6e-65 251.5 509 40.9
EL10Ac5g12722 Beta vulgaris HOM05D005805 ORTHO05D007226 2.1e-64 250.4 449 44.8
unitig_8.g3899 Utricularia gibba HOM05D005805 ORTHO05D007226 6.2e-64 248.8 367 42.8
AUR62010661 Chenopodium quinoa HOM05D005805 ORTHO05D007226 8.1e-64 248.4 438 42.9
HPP92_020989 Vanilla planifolia HOM05D005805 ORTHO05D007226 6.9e-63 245.4 372 40.1
Oeu001898.3 Olea europaea HOM05D005805 ORTHO05D007226 3.4e-62 243.0 335 46.3
arahy.Tifrunner.gnm1.ann1.J6ALFQ Arachis hypogaea HOM05D005805 ORTHO05D007226 5.8e-62 242.3 485 41.4
Gohir.A08G178400 Gossypium hirsutum HOM05D005805 ORTHO05D007226 1.3e-61 241.1 467 43.5
Os03g0667700 Oryza sativa ssp. japonica HOM05D005805 ORTHO05D007226 1.3e-61 241.1 357 43.1
Zm00001eb073520 Zea mays HOM05D005805 ORTHO05D007226 4.9e-61 239.2 447 46.5
Haze_08957 Corylus avellana HOM05D005805 ORTHO05D007226 3.2e-60 236.5 492 42.9
PSO478G0076 Papaver somniferum HOM05D005805 ORTHO05D007226 3.5e-59 233.0 568 36.4
ATR0757G009 Amborella trichopoda HOM05D005805 ORTHO05D007226 1.7e-58 230.7 326 42.9
CDE11G0359 Ceratophyllum demersum HOM05D005805 ORTHO05D007226 7.3e-57 225.3 488 34.2
Ah.12g057730 Amaranthus hybridus HOM05D005805 ORTHO05D007226 3.1e-55 219.9 474 36.5
PSO782G3262 Papaver somniferum HOM05D005805 ORTHO05D007226 6.9e-55 218.8 573 34.7
Rhsim08G0109800 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.3e-53 214.5 277 48.4
Hund28361 Selenicereus undatus HOM05D005805 ORTHO05D007226 1.7e-53 214.2 492 40.0
Hund28365 Selenicereus undatus HOM05D005805 ORTHO05D007226 1.7e-53 214.2 492 40.0
Manes.02G028100 Manihot esculenta HOM05D005805 ORTHO05D007226 1.4e-52 211.1 367 49.0
BolC2t10164H Brassica oleracea HOM05D005805 ORTHO05D007226 2.7e-51 206.8 107 97.2
COL.COLO4_05276 Corchorus olitorius HOM05D005805 ORTHO05D007226 2.7e-51 206.8 138 73.9
SalBow6G0943 Salvia bowleyana HOM05D005805 ORTHO05D007226 1.8e-50 204.1 337 46.6
TAR374G1484 Trochodendron aralioides HOM05D005805 ORTHO05D007226 3.5e-43 179.9 149 65.1
Gohir.D08G196900 Gossypium hirsutum HOM05D005805 ORTHO05D007226 5.7e-41 172.6 132 65.9
vmacro10803 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 4.3e-33 146.4 290 41.7
Ah.02g116420 Amaranthus hybridus HOM05D005805 ORTHO05D007226 1.6e-32 144.4 445 33.9
Cpa.g.sc29.9 Carica papaya HOM05D005805 ORTHO05D007226 1.4e-31 141.4 385 31.2
Atru.chr9.1535 Acer truncatum HOM05D005805 ORTHO05D007226 3.1e-31 140.2 161 46.6
AagrBONN_evm.TU.Sc2ySwM_344.4489 Anthoceros agrestis HOM05D005805 ORTHO05D007226 8.8e-26 122.1 366 27.6
DCAR_006764 Daucus carota HOM05D005805 ORTHO05D007226 4.8e-24 116.3 164 43.9
COL.COLO4_05274 Corchorus olitorius HOM05D005805 ORTHO05D007226 1.7e-16 91.3 59 71.2
Hma1.2p1_0002F.1_g002590 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 2.4e-15 87.4 55 65.5
CBR_g49019 Chara braunii HOM05D005805 ORTHO05D007226 3.5e-14 83.6 112 40.2
SGA_v2.0_scaffold60G21020 Striga asiatica HOM05D011763 ORTHO05D014257 1.2e-11 75.1 80 50.0
SGA_v2.0_scaffold60G20821 Striga asiatica HOM05D011763 ORTHO05D014257 2.7e-11 73.9 54 59.3


User provided reference genes

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