Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p25690 Brassica napus HOM05D005835 ORTHO05D007187 7.0e-240 833.6 426 100.0
BraA02t07561Z Brassica rapa HOM05D005835 ORTHO05D007187 1.8e-147 526.6 282 95.0
BolC2t10102H Brassica oleracea HOM05D005835 ORTHO05D007187 3.2e-128 462.6 269 90.7
C02p40850 Brassica napus HOM05D005835 ORTHO05D007187 9.8e-117 424.5 370 66.8
BcaC03g16290 Brassica carinata HOM05D005835 ORTHO05D007187 6.6e-89 332.0 173 96.5
Sp6g05250 Schrenkiella parvula HOM05D005835 ORTHO05D007187 6.4e-84 315.5 227 73.1
BcaB05g23754 Brassica carinata HOM05D005835 ORTHO05D007187 1.9e-83 313.9 173 91.9
BcaB01g01732 Brassica carinata HOM05D005835 ORTHO05D007187 4.8e-71 272.7 171 78.9
BraA02t07560Z Brassica rapa HOM05D011913 ORTHO05D014322 1.4e-70 271.2 144 96.5
C09p34190 Brassica napus HOM05D005835 ORTHO05D007187 1.8e-70 270.8 170 80.6
BolC9t56264H Brassica oleracea HOM05D005835 ORTHO05D007187 1.8e-70 270.8 170 80.6
A09p26960 Brassica napus HOM05D005835 ORTHO05D007187 4.0e-70 269.6 174 79.9
BraA09t38266Z Brassica rapa HOM05D005835 ORTHO05D007187 4.0e-70 269.6 174 79.9
BcaC04g21221 Brassica carinata HOM05D005835 ORTHO05D007187 1.5e-69 267.7 168 80.4
CARHR253910 Cardamine hirsuta HOM05D005835 ORTHO05D007187 2.6e-69 266.9 173 76.9
AL6G47200 Arabidopsis lyrata HOM05D005835 ORTHO05D007187 1.7e-68 264.2 171 76.0
Carub.0006s3148 Capsella rubella HOM05D005835 ORTHO05D007187 1.7e-68 264.2 171 75.4
Thhalv10029018m.g Eutrema salsugineum HOM05D005835 ORTHO05D007187 1.8e-65 254.2 171 74.3
C02p40840 Brassica napus HOM05D011913 ORTHO05D014322 1.1e-64 251.5 149 90.6
Aa31LG9G10270 Aethionema arabicum HOM05D005835 ORTHO05D007187 4.3e-64 249.6 182 68.7
AT4G12340 Arabidopsis thaliana HOM05D005835 ORTHO05D007187 1.3e-63 248.1 172 72.7
BcaB05g23750 Brassica carinata HOM05D011913 ORTHO05D014322 1.0e-60 238.4 148 85.8
AT4G12360 Arabidopsis thaliana HOM05D011913 ORTHO05D014322 1.6e-47 194.5 148 68.9
THA.LOC104806344 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 8.2e-47 192.2 172 57.0
CARHR253930 Cardamine hirsuta HOM05D005835 ORTHO05D007187 2.0e-45 187.6 119 76.5
AL6G47220 Arabidopsis lyrata HOM05D011913 ORTHO05D014322 7.7e-45 185.7 148 64.9
THA.LOC104813805 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 1.3e-44 184.9 175 55.4
Carub.0006s3150 Capsella rubella HOM05D011913 ORTHO05D014322 5.1e-41 172.9 148 61.5
CARHR253880 Cardamine hirsuta HOM05D011913 ORTHO05D014322 2.4e-38 164.1 148 62.8
TWI81G0081 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 1.0e-36 158.7 179 48.6
Haze_08597 Corylus avellana HOM05D005835 ORTHO05D007187 2.9e-36 157.1 180 46.7
Cpa.g.sc29.103 Carica papaya HOM05D005835 ORTHO05D007187 3.8e-36 156.8 179 45.3
Manes.01G074300 Manihot esculenta HOM05D005835 ORTHO05D007187 5.0e-36 156.4 176 48.3
Oeu040228.1 Olea europaea HOM05D005835 ORTHO05D007187 5.0e-36 156.4 178 47.8
Eucgr.E01477 Eucalyptus grandis HOM05D005835 ORTHO05D007187 8.5e-36 155.6 170 46.5
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 3.2e-35 153.7 180 46.1
Duzib068G0435 Durio zibethinus HOM05D005835 ORTHO05D007187 3.2e-35 153.7 179 46.4
Prupe.4G260700 Prunus persica HOM05D005835 ORTHO05D007187 3.2e-35 153.7 179 46.4
Manes.02G034200 Manihot esculenta HOM05D005835 ORTHO05D007187 1.6e-34 151.4 176 47.2
Nn1g01130 Nelumbo nucifera HOM05D005835 ORTHO05D007187 1.6e-34 151.4 177 48.0
Nn1g01126 Nelumbo nucifera HOM05D005835 ORTHO05D007187 2.1e-34 151.0 177 48.6
CiPaw.12G105500 Carya illinoinensis HOM05D005835 ORTHO05D007187 3.6e-34 150.2 180 46.1
Duzib205G1381 Durio zibethinus HOM05D005835 ORTHO05D007187 1.0e-33 148.7 179 45.3
Cfa012808 Carpinus fangiana HOM05D005835 ORTHO05D007187 1.8e-33 147.9 180 45.6
Atru.chr9.1404 Acer truncatum HOM05D005835 ORTHO05D007187 6.7e-33 146.0 176 44.9
Sabra03G0079300 Salix brachista HOM05D005835 ORTHO05D007187 6.7e-33 146.0 179 43.6
Hma1.2p1_2131F.1_g314730 Hydrangea macrophylla HOM05D005835 ORTHO05D007187 8.8e-33 145.6 178 46.1
CiPaw.11G149200 Carya illinoinensis HOM05D005835 ORTHO05D007187 1.5e-32 144.8 172 47.1
CsaV3_3G003110 Cucumis sativus L. HOM05D005835 ORTHO05D007187 4.4e-32 143.3 180 44.4
HanXRQChr13g0394681 Helianthus annuus HOM05D005835 ORTHO05D007187 4.4e-32 143.3 199 44.2
Cc08_g13120 Coffea canephora HOM05D005835 ORTHO05D007187 5.7e-32 142.9 176 43.8
ClCG10G003070 Citrullus lanatus HOM05D005835 ORTHO05D007187 7.4e-32 142.5 178 44.4
MSTRG.12070 Avicennia marina HOM05D005835 ORTHO05D007187 9.7e-32 142.1 180 43.9
Nitab4.5_0005535g0030 Nicotiana tabacum HOM05D005835 ORTHO05D007187 1.3e-31 141.7 176 43.8
HanXRQChr02g0049681 Helianthus annuus HOM05D005835 ORTHO05D007187 1.7e-31 141.4 172 48.3
MD04G1080500 Malus domestica HOM05D005835 ORTHO05D007187 1.7e-31 141.4 178 44.4
Aqoxy7G00679 Aquilegia oxysepala HOM05D005835 ORTHO05D007187 2.2e-31 141.0 177 45.8
MBI04_g35668_MAGBIO Magnolia biondii HOM05D005835 ORTHO05D007187 2.2e-31 141.0 178 44.4
Potri.003G114200 Populus trichocarpa HOM05D005835 ORTHO05D007187 2.2e-31 141.0 179 43.0
arahy.Tifrunner.gnm1.ann1.7G3HX4 Arachis hypogaea HOM05D005835 ORTHO05D007187 2.8e-31 140.6 172 45.9
MELO3C013977.2 Cucumis melo HOM05D005835 ORTHO05D007187 2.8e-31 140.6 180 43.9
Duzib084G0572 Durio zibethinus HOM05D005835 ORTHO05D007187 3.7e-31 140.2 179 41.9
Nitab4.5_0005230g0060 Nicotiana tabacum HOM05D005835 ORTHO05D007187 4.8e-31 139.8 175 43.4
CDE02G0720 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 6.3e-31 139.4 175 46.3
AUR62029858 Chenopodium quinoa HOM05D005835 ORTHO05D007187 8.2e-31 139.0 169 45.6
Migut.A00824 Erythranthe guttata HOM05D005835 ORTHO05D007187 8.2e-31 139.0 188 42.0
SalBow6G1585 Salvia bowleyana HOM05D005835 ORTHO05D007187 8.2e-31 139.0 166 44.0
EL10Ac4g07900 Beta vulgaris HOM05D005835 ORTHO05D007187 1.1e-30 138.7 172 44.2
ECA233G2089 Erigeron canadensis HOM05D005835 ORTHO05D007187 1.1e-30 138.7 173 43.4
Migut.A00868 Erythranthe guttata HOM05D005835 ORTHO05D007187 1.4e-30 138.3 191 41.4
Potri.001G118700 Populus trichocarpa HOM05D005835 ORTHO05D007187 1.4e-30 138.3 179 41.9
Dinv21579 Davidia involucrata HOM05D005835 ORTHO05D007187 1.8e-30 137.9 175 45.1
Sc02g0009280 Simmondsia chinensis HOM05D005835 ORTHO05D007187 1.8e-30 137.9 177 45.2
AUR62025857 Chenopodium quinoa HOM05D005835 ORTHO05D007187 3.1e-30 137.1 169 44.4
Hund02098 Selenicereus undatus HOM05D005835 ORTHO05D007187 3.1e-30 137.1 171 43.3
Gohir.A12G220500 Gossypium hirsutum HOM05D005835 ORTHO05D007187 4.1e-30 136.7 175 42.3
Gohir.D12G222800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 4.1e-30 136.7 174 42.5
Gorai.008G238900 Gossypium raimondii HOM05D005835 ORTHO05D007187 4.1e-30 136.7 174 42.5
Rhsim07G0102800 Rhododendron simsii HOM05D005835 ORTHO05D007187 5.3e-30 136.3 170 44.7
Thecc.03G259800 Theobroma cacao HOM05D005835 ORTHO05D007187 5.3e-30 136.3 179 41.9
QL03p017823 Quercus lobata HOM05D005835 ORTHO05D007187 1.5e-29 134.8 183 42.6
SGA_v2.0_scaffold146G36171 Striga asiatica HOM05D005835 ORTHO05D007187 1.5e-29 134.8 173 42.8
CANSAT21G1576 Cannabis sativa HOM05D005835 ORTHO05D007187 2.0e-29 134.4 181 41.4
CAN.G1528.1 Capsicum annuum HOM05D005835 ORTHO05D007187 2.0e-29 134.4 173 42.2
Dinv39089 Davidia involucrata HOM05D005835 ORTHO05D007187 2.0e-29 134.4 174 44.8
Gohir.D03G159700 Gossypium hirsutum HOM05D005835 ORTHO05D007187 2.0e-29 134.4 177 44.1
QL93p2009_0035 Quercus lobata HOM05D005835 ORTHO05D007187 2.6e-29 134.0 179 43.0
PGR031G1343 Punica granatum HOM05D005835 ORTHO05D007187 3.5e-29 133.7 177 42.4
TAR375G0176 Trochodendron aralioides HOM05D005835 ORTHO05D007187 5.9e-29 132.9 192 41.1
VMungo1215G0693 Vigna mungo HOM05D005835 ORTHO05D007187 5.9e-29 132.9 167 44.3
arahy.Tifrunner.gnm1.ann1.4SJ6CH Arachis hypogaea HOM05D005835 ORTHO05D007187 1.0e-28 132.1 169 43.8
HPP92_005292 Vanilla planifolia HOM05D005835 ORTHO05D007187 1.0e-28 132.1 175 44.6
Peaxi162Scf00004g03718 Petunia axillaris HOM05D005835 ORTHO05D007187 1.3e-28 131.7 171 41.5
Phvul.003G214325 Phaseolus vulgaris HOM05D005835 ORTHO05D007187 1.7e-28 131.3 166 43.4
Gorai.003G168000 Gossypium raimondii HOM05D005835 ORTHO05D007187 2.2e-28 131.0 177 43.5
TAR374G0447 Trochodendron aralioides HOM05D005835 ORTHO05D007187 2.2e-28 131.0 179 43.6
Lalb_Chr05g0225471 Lupinus albus HOM05D005835 ORTHO05D007187 2.9e-28 130.6 172 43.0
Solyc11g065270.2 Solanum lycopersicum HOM05D005835 ORTHO05D007187 3.8e-28 130.2 173 42.2
Ciclev10022502m.g Citrus clementina HOM05D005835 ORTHO05D007187 5.0e-28 129.8 182 41.8
Sed0018910 Sechium edule HOM05D005835 ORTHO05D007187 5.0e-28 129.8 178 42.7
Sopen11g025020 Solanum pennellii HOM05D005835 ORTHO05D007187 5.0e-28 129.8 173 42.8
COL.COLO4_23892 Corchorus olitorius HOM05D005835 ORTHO05D007187 6.5e-28 129.4 173 41.6
Ah.01g013950 Amaranthus hybridus HOM05D005835 ORTHO05D007187 8.5e-28 129.0 165 43.0
SGA_v2.0_scaffold120G32837 Striga asiatica HOM05D005835 ORTHO05D007187 8.5e-28 129.0 175 42.9
PGSC0003DMG400029987 Solanum tuberosum HOM05D005835 ORTHO05D007187 1.1e-27 128.6 173 40.5
Lalb_Chr16g0389651 Lupinus albus HOM05D005835 ORTHO05D007187 1.9e-27 127.9 172 43.0
TWI15G0429 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 1.9e-27 127.9 114 56.1
Os05g0103500 Oryza sativa ssp. japonica HOM05D005835 ORTHO05D007187 2.5e-27 127.5 177 39.5
FAN04G1493 Fragaria x ananassa HOM05D005835 ORTHO05D007187 3.2e-27 127.1 178 40.4
Glyma.05G051800 Glycine max HOM05D005835 ORTHO05D007187 3.2e-27 127.1 172 43.6
Gohir.A03G013800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 7.2e-27 125.9 177 41.8
CDE04G3390 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 9.4e-27 125.6 173 42.2
FAN08G1980 Fragaria x ananassa HOM05D005835 ORTHO05D007187 9.4e-27 125.6 178 39.3
FAN13G2021 Fragaria x ananassa HOM05D005835 ORTHO05D007187 9.4e-27 125.6 184 38.6
Sabra01G0091600 Salix brachista HOM05D005835 ORTHO05D007187 9.4e-27 125.6 180 40.0
TPR.G37587 Trifolium pratense HOM05D005835 ORTHO05D007187 1.2e-26 125.2 167 43.1
FvH4_5g00490 Fragaria vesca HOM05D005835 ORTHO05D007187 2.1e-26 124.4 184 38.6
FAN18G1180 Fragaria x ananassa HOM05D005835 ORTHO05D007187 2.1e-26 124.4 184 38.6
RcHm_v2.0_Chr7g0202021 Rosa chinensis HOM05D005835 ORTHO05D007187 2.1e-26 124.4 178 39.3
Medtr4g102330 Medicago truncatula HOM05D005835 ORTHO05D007187 3.6e-26 123.6 164 41.5
Sc16g0006190 Simmondsia chinensis HOM05D005835 ORTHO05D007187 4.7e-26 123.2 176 40.9
Psat0s1988g0040 Pisum sativum HOM05D005835 ORTHO05D007187 6.1e-26 122.9 165 43.0
GSVIVG01004287001 Vitis vinifera HOM05D005835 ORTHO05D007187 8.0e-26 122.5 169 42.0
QL12p014300 Quercus lobata HOM05D005835 ORTHO05D007187 1.8e-25 121.3 175 38.9
GSVIVG01007420001 Vitis vinifera HOM05D005835 ORTHO05D007187 2.3e-25 120.9 168 41.7
PSO782G1790 Papaver somniferum HOM05D005835 ORTHO05D007187 2.6e-24 117.5 184 40.2
PSO478G0096 Papaver somniferum HOM05D005835 ORTHO05D007187 5.7e-24 116.3 185 40.5
Zm00001eb356210 Zea mays HOM05D005835 ORTHO05D007187 1.3e-23 115.2 169 40.8
Ca_12275_v3 Cicer arietinum L. HOM05D005835 ORTHO05D007187 2.2e-23 114.4 163 38.0
Lsat_1_v5_gn_6_4381 Lactuca sativa HOM05D005835 ORTHO05D007187 2.2e-23 114.4 164 40.2
ATR0115G012 Amborella trichopoda HOM05D005835 ORTHO05D007187 1.4e-22 111.7 179 40.2
CSS0045584 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 4.1e-22 110.2 154 40.9
CSS0008349 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 2.9e-20 104.0 164 37.2
SHI20590 Sapria himalayana HOM05D005835 ORTHO05D007187 1.0e-17 95.5 186 34.9
Aa31LG9G10230 Aethionema arabicum HOM05D011913 ORTHO05D014322 1.4e-17 95.1 151 46.4
BraA05t22070Z Brassica rapa HOM05D001482 ORTHO05D001499 2.6e-16 90.9 122 46.7
A05p32430 Brassica napus HOM05D001482 ORTHO05D001499 1.3e-15 88.6 122 45.9
SEGI_03973 Sequoiadendron giganteum HOM05D005835 ORTHO05D007187 1.8e-14 84.7 178 32.6
BolC2t10101H Brassica oleracea HOM05D011913 ORTHO05D014322 2.7e-13 80.9 132 44.7
THA.LOC104806342 Tarenaya hassleriana HOM05D011913 ORTHO05D014322 3.5e-13 80.5 148 40.5
BcaC03g16288 Brassica carinata HOM05D011913 ORTHO05D014322 1.2e-10 72.0 113 43.4
Mapoly0001s0295 Marchantia polymorpha HOM05D005835 ORTHO05D007187 2.1e-10 71.2 181 27.1
Actinidia05173 Actinidia chinensis HOM05D005835 ORTHO05D000538 2.7e-10 70.9 114 39.5
Pp3c15_5650 Physcomitrium patens HOM05D005835 ORTHO05D007187 1.8e-09 68.2 176 27.3
Aa31LG9G10250 Aethionema arabicum HOM05D011913 ORTHO05D014322 2.3e-09 67.8 153 39.2
Aa31sc2410G10 Aethionema arabicum HOM05D011913 ORTHO05D014322 2.0e-08 64.7 117 43.6
Pp3c8_11610 Physcomitrium patens HOM05D005835 ORTHO05D007187 1.7e-07 61.6 182 24.7
Aa31LG2G3320 Aethionema arabicum HOM05D000889 ORTHO05D000693 2.8e-07 60.8 57 54.4
Hma1.2p1_0976F.1_g243290 Hydrangea macrophylla HOM05D000889 ORTHO05D000693 3.7e-07 60.5 94 38.3
Thhalv10023739m.g Eutrema salsugineum HOM05D001858 ORTHO05D001838 8.3e-07 59.3 144 31.2
CiPaw.11G149500 Carya illinoinensis HOM05D001858 ORTHO05D001838 1.1e-06 58.9 148 31.8
Carub.0007s3508 Capsella rubella HOM05D000889 ORTHO05D000693 3.1e-06 57.4 70 44.3
Sp2g01820 Schrenkiella parvula HOM05D001858 ORTHO05D001838 3.1e-06 57.4 140 32.9
Gohir.A12G220350 Gossypium hirsutum HOM05D001858 ORTHO05D001838 5.4e-06 56.6 86 40.7
THA.LOC104805972 Tarenaya hassleriana HOM05D000889 ORTHO05D000693 7.0e-06 56.2 80 45.0


User provided reference genes

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