Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 3.1e-54 214.9 112 100.0
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 6.7e-49 197.2 119 90.8
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 3.3e-48 194.9 130 83.8
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 1.3e-41 172.9 136 72.1
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 6.7e-41 170.6 130 76.9
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 8.7e-41 170.2 137 70.1
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 1.9e-40 169.1 136 70.6
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 7.4e-40 167.2 145 68.3
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 9.7e-40 166.8 136 69.9
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 1.3e-39 166.4 136 69.9
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.7e-39 166.0 135 68.9
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.7e-39 166.0 135 68.9
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 1.7e-39 166.0 135 68.9
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 2.2e-39 165.6 147 66.0
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 2.2e-39 165.6 147 66.0
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 2.8e-39 165.2 135 68.9
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 4.8e-39 164.5 135 68.1
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 8.2e-39 163.7 103 88.3
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 1.4e-38 162.9 136 68.4
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 2.4e-38 162.2 135 67.4
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 4.1e-38 161.4 137 67.9
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 5.3e-38 161.0 134 68.7
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 5.3e-38 161.0 134 68.7
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 6.9e-38 160.6 90 94.4
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 9.1e-38 160.2 136 66.2
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 1.2e-37 159.8 148 64.2
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 1.2e-37 159.8 136 66.2
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 1.2e-37 159.8 135 67.4
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 1.5e-37 159.5 135 66.7
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 1.5e-37 159.5 135 66.7
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 1.5e-37 159.5 135 66.7
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.0e-37 159.1 134 68.7
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 2.6e-37 158.7 136 67.6
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 2.6e-37 158.7 151 62.9
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 2.6e-37 158.7 151 62.9
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 2.6e-37 158.7 135 68.1
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 3.4e-37 158.3 135 64.4
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 4.5e-37 157.9 143 64.3
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 5.9e-37 157.5 136 66.2
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 5.9e-37 157.5 135 65.9
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 7.7e-37 157.1 136 66.9
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 7.7e-37 157.1 135 66.7
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.0e-36 156.8 134 65.7
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.0e-36 156.8 134 65.7
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 1.3e-36 156.4 134 67.2
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 1.3e-36 156.4 136 66.2
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 1.3e-36 156.4 136 66.2
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.7e-36 156.0 134 65.7
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 1.7e-36 156.0 137 65.7
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.7e-36 156.0 134 66.4
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 2.2e-36 155.6 135 65.9
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 2.9e-36 155.2 135 66.7
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 2.9e-36 155.2 134 65.7
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 5.0e-36 154.5 135 65.9
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 5.0e-36 154.5 139 62.6
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 1.1e-35 153.3 135 65.2
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 1.4e-35 152.9 134 65.7
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 3.2e-35 151.8 136 62.5
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 3.2e-35 151.8 135 65.2
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 3.2e-35 151.8 134 64.2
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 4.2e-35 151.4 135 65.2
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 5.5e-35 151.0 140 63.6
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 7.2e-35 150.6 134 64.9
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 7.2e-35 150.6 131 64.9
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 1.2e-34 149.8 156 58.3
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 1.2e-34 149.8 160 59.4
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 1.2e-34 149.8 140 62.9
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 1.2e-34 149.8 135 64.4
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 1.6e-34 149.4 135 63.0
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 1.6e-34 149.4 135 64.4
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 4.7e-34 147.9 137 62.0
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 6.1e-34 147.5 135 63.7
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 1.4e-33 146.4 131 63.4
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 3.0e-33 145.2 137 62.8
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 3.9e-33 144.8 138 61.6
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 8.8e-33 143.7 137 62.0
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 8.8e-33 143.7 135 63.0
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 8.8e-33 143.7 134 61.9
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 1.1e-32 143.3 134 62.7
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.1e-32 143.3 140 60.7
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 1.5e-32 142.9 135 62.2
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 1.5e-32 142.9 135 61.5
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 1.5e-32 142.9 135 61.5
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 1.5e-32 142.9 135 60.0
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 1.5e-32 142.9 135 60.0
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 2.0e-32 142.5 134 61.2
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 2.6e-32 142.1 135 61.5
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 3.3e-32 141.7 134 61.2
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 4.4e-32 141.4 144 57.6
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 4.4e-32 141.4 135 61.5
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.4e-32 141.4 140 60.0
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 4.4e-32 141.4 134 62.7
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 5.7e-32 141.0 136 59.6
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 9.7e-32 140.2 135 60.7
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 1.7e-31 139.4 134 60.4
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 2.2e-31 139.0 137 61.3
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.2e-31 139.0 135 61.5
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 2.2e-31 139.0 135 60.0
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 3.7e-31 138.3 142 57.7
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 4.8e-31 137.9 134 59.0
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 6.3e-31 137.5 135 60.7
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 8.2e-31 137.1 138 59.4
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 8.2e-31 137.1 134 59.7
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 1.1e-30 136.7 144 57.6
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 9.1e-30 133.7 174 50.0
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 9.1e-30 133.7 106 72.6
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 2.0e-29 132.5 135 56.3
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 3.4e-29 131.7 134 58.2
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 4.5e-29 131.3 129 61.2
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 4.5e-29 131.3 148 54.1
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 5.9e-29 131.0 166 50.0
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 5.9e-29 131.0 134 59.0
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 7.7e-29 130.6 105 72.4
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.3e-28 129.8 134 57.5
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 1.4e-27 126.3 136 54.4
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 3.2e-27 125.2 97 68.0
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 1.6e-26 122.9 109 63.3
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 3.6e-26 121.7 114 65.8
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 4.7e-26 121.3 170 47.6
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 1.0e-25 120.2 116 59.5
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 1.0e-25 120.2 108 63.9
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 3.9e-25 118.2 120 58.3
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 1.5e-24 116.3 164 45.7
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.4e-24 114.8 98 67.3
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 4.1e-22 108.2 97 62.9
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 9.1e-22 107.1 116 55.2
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 1.2e-21 106.7 135 47.4
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 1.2e-21 106.7 154 44.8
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 1.6e-21 106.3 84 67.9
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 1.7e-20 102.8 130 46.9
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 1.7e-20 102.8 84 66.7
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 1.5e-19 99.8 163 40.5
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 2.7e-18 95.5 128 46.9
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 2.3e-17 92.4 72 68.1
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 2.3e-17 92.4 72 68.1
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 5.2e-17 91.3 132 43.9
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 5.7e-16 87.8 116 51.7
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.3e-15 86.7 107 52.3
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.4e-14 83.2 49 79.6
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.4e-14 82.4 76 64.5
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.1e-14 82.0 76 64.5
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 3.1e-14 82.0 76 63.2
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 3.1e-14 82.0 76 63.2
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 7.0e-14 80.9 70 65.7
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.7e-13 79.0 76 60.5
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 7.7e-13 77.4 76 59.2
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 1.7e-12 76.3 77 59.7
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 5.0e-12 74.7 76 56.6
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 3.6e-10 68.6 67 56.7
A06p38190 Brassica napus HOM05D004301 ORTHO05D005124 6.1e-10 67.8 80 50.0
BraA06t26734Z Brassica rapa HOM05D004301 ORTHO05D005124 6.1e-10 67.8 80 50.0
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 2.3e-09 65.9 44 70.5
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 2.0e-08 62.8 65 56.9
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 3.4e-08 62.0 46 65.2
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 4.4e-08 61.6 48 62.5
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 7.5e-08 60.8 48 62.5
A07p00860 Brassica napus HOM05D004301 ORTHO05D005124 1.3e-07 60.1 37 81.1
BraA07t27884Z Brassica rapa HOM05D004301 ORTHO05D005124 1.3e-07 60.1 37 81.1
BcaC02g10822 Brassica carinata HOM05D016370 ORTHO05D018632 1.1e-06 57.0 35 77.1
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 1.1e-06 57.0 78 52.6
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 7.0e-06 54.3 97 38.1


User provided reference genes

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