Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p24830 Brassica napus HOM05D006257 ORTHO05D007708 6.7e-186 654.1 377 100.0
BraA02t07471Z Brassica rapa HOM05D007780 ORTHO05D000140 7.2e-164 580.9 348 88.5
Sp6g02450 Schrenkiella parvula HOM05D006257 ORTHO05D007708 4.0e-45 186.4 111 88.3
BolC3t14675H Brassica oleracea HOM05D007244 ORTHO05D011635 3.4e-44 183.3 180 58.9
CARHR250830 Cardamine hirsuta HOM05D006257 ORTHO05D007708 1.3e-43 181.4 126 77.0
Thhalv10028953m.g Eutrema salsugineum HOM05D006257 ORTHO05D007708 1.7e-43 181.0 111 84.7
BcaC04g23996 Brassica carinata HOM05D006257 ORTHO05D007708 3.7e-43 179.9 111 84.7
C09p02090 Brassica napus HOM05D006257 ORTHO05D007708 3.7e-43 179.9 111 84.7
BolC9t53138H Brassica oleracea HOM05D006257 ORTHO05D007708 3.7e-43 179.9 111 84.7
AL6G50510 Arabidopsis lyrata HOM05D006257 ORTHO05D007708 6.3e-43 179.1 111 84.7
AT4G02530 Arabidopsis thaliana HOM05D006257 ORTHO05D007708 6.3e-43 179.1 111 84.7
BraA09t35849Z Brassica rapa HOM05D006257 ORTHO05D007708 1.1e-42 178.3 111 83.8
A09p01980 Brassica napus HOM05D006257 ORTHO05D007708 1.4e-42 177.9 111 83.8
Carub.0006s3460 Capsella rubella HOM05D006257 ORTHO05D007708 2.7e-41 173.7 126 74.6
BcaC03g16142 Brassica carinata HOM05D006257 ORTHO05D007708 3.3e-39 166.8 115 81.7
Duzib187G1365 Durio zibethinus HOM05D006257 ORTHO05D007708 3.6e-38 163.3 128 68.0
Duzib168G0222 Durio zibethinus HOM05D006257 ORTHO05D007708 1.8e-37 161.0 128 66.4
Aa31LG5G2160 Aethionema arabicum HOM05D006257 ORTHO05D007708 4.0e-37 159.8 106 81.1
MBI04_g29340_MAGBIO Magnolia biondii HOM05D006257 ORTHO05D007708 4.0e-37 159.8 128 68.0
THA.LOC104808977 Tarenaya hassleriana HOM05D006257 ORTHO05D007708 3.4e-36 156.8 111 73.9
CiPaw.03G245900 Carya illinoinensis HOM05D006257 ORTHO05D007708 4.4e-36 156.4 128 64.8
Ciclev10009322m.g Citrus clementina HOM05D006257 ORTHO05D007708 4.4e-36 156.4 128 66.4
Gohir.A07G036500 Gossypium hirsutum HOM05D006257 ORTHO05D007708 4.4e-36 156.4 128 64.1
Gohir.D07G040500 Gossypium hirsutum HOM05D006257 ORTHO05D007708 4.4e-36 156.4 128 64.1
Gorai.001G043000 Gossypium raimondii HOM05D006257 ORTHO05D007708 4.4e-36 156.4 128 64.1
CiPaw.04G172800 Carya illinoinensis HOM05D006257 ORTHO05D007708 5.7e-36 156.0 128 64.1
Potri.018G129600 Populus trichocarpa HOM05D006257 ORTHO05D007708 5.7e-36 156.0 128 64.8
Atru.chr7.1126 Acer truncatum HOM05D006257 ORTHO05D007708 7.5e-36 155.6 128 64.8
Hma1.2p1_0931F.1_g238140 Hydrangea macrophylla HOM05D006257 ORTHO05D007708 1.3e-35 154.8 128 64.8
Lalb_Chr13g0301741 Lupinus albus HOM05D006257 ORTHO05D007708 1.3e-35 154.8 128 65.6
Thecc.09G128900 Theobroma cacao HOM05D006257 ORTHO05D007708 1.7e-35 154.5 128 64.1
TAR625G1128 Trochodendron aralioides HOM05D006257 ORTHO05D007708 2.2e-35 154.1 112 70.5
Ca_06925_v3 Cicer arietinum L. HOM05D006257 ORTHO05D007708 2.9e-35 153.7 128 64.1
TPR.G26482 Trifolium pratense HOM05D006257 ORTHO05D007708 3.7e-35 153.3 128 63.3
Actinidia40485 Actinidia chinensis HOM05D006257 ORTHO05D007708 4.9e-35 152.9 128 64.8
TAR636G3495 Trochodendron aralioides HOM05D006257 ORTHO05D007708 4.9e-35 152.9 128 62.5
COL.COLO4_35097 Corchorus olitorius HOM05D006257 ORTHO05D007708 6.4e-35 152.5 126 65.1
Actinidia21972 Actinidia chinensis HOM05D006257 ORTHO05D007708 8.3e-35 152.1 128 64.1
Lalb_Chr08g0234691 Lupinus albus HOM05D006257 ORTHO05D007708 8.3e-35 152.1 128 65.6
Medtr0339s0030 Medicago truncatula HOM05D006257 ORTHO05D007708 8.3e-35 152.1 128 64.1
PGR102G0698 Punica granatum HOM05D006257 ORTHO05D007708 8.3e-35 152.1 111 70.3
GSVIVG01015564001 Vitis vinifera HOM05D006257 ORTHO05D007708 8.3e-35 152.1 128 61.7
Cpa.g.sc46.16 Carica papaya HOM05D006257 ORTHO05D007708 1.1e-34 151.8 128 63.3
Manes.06G057000 Manihot esculenta HOM05D006257 ORTHO05D007708 1.1e-34 151.8 128 62.5
Potri.006G067600 Populus trichocarpa HOM05D006257 ORTHO05D007708 1.4e-34 151.4 128 62.5
CANSAT11G2152 Cannabis sativa HOM05D006257 ORTHO05D007708 1.8e-34 151.0 128 61.7
MD02G1029500 Malus domestica HOM05D006257 ORTHO05D007708 1.8e-34 151.0 128 63.3
Glyma.06G224200 Glycine max HOM05D006257 ORTHO05D007708 5.4e-34 149.4 128 62.5
vmacro20574 Vaccinium macrocarpon HOM05D006257 ORTHO05D007708 5.4e-34 149.4 128 61.7
Lj7A424T23 Lonicera japonica HOM05D006257 ORTHO05D007708 7.0e-34 149.1 125 63.2
Lj4g0014254 Lotus japonicus HOM05D006257 ORTHO05D007708 7.0e-34 149.1 128 61.7
VMungo1215G0813 Vigna mungo HOM05D006257 ORTHO05D007708 7.0e-34 149.1 128 60.9
CSS0030940 Camellia sinensis var. sinensis HOM05D006257 ORTHO05D007708 9.2e-34 148.7 128 61.7
CsaV3_2G002980 Cucumis sativus L. HOM05D006257 ORTHO05D007708 9.2e-34 148.7 128 62.5
arahy.Tifrunner.gnm1.ann1.BX3F9W Arachis hypogaea HOM05D006257 ORTHO05D007708 1.2e-33 148.3 128 62.5
arahy.Tifrunner.gnm1.ann1.FTT948 Arachis hypogaea HOM05D006257 ORTHO05D007708 1.2e-33 148.3 128 62.5
MD15G1170900 Malus domestica HOM05D006257 ORTHO05D007708 2.0e-33 147.5 128 63.3
QL02p088998 Quercus lobata HOM05D006257 ORTHO05D007708 2.0e-33 147.5 127 60.6
Phvul.003G166300 Phaseolus vulgaris HOM05D006257 ORTHO05D007708 2.7e-33 147.1 128 60.9
Prupe.7G245400 Prunus persica HOM05D006257 ORTHO05D007708 3.5e-33 146.7 128 60.9
MELO3C004491.2 Cucumis melo HOM05D006257 ORTHO05D007708 7.8e-33 145.6 128 60.9
Lalb_Chr07g0179081 Lupinus albus HOM05D006257 ORTHO05D007708 7.8e-33 145.6 126 63.5
Peaxi162Scf00313g00815 Petunia axillaris HOM05D006257 ORTHO05D007708 1.0e-32 145.2 128 60.2
Glyma.04G142800 Glycine max HOM05D006257 ORTHO05D007708 3.0e-32 143.7 128 60.9
Glyma.17G113300 Glycine max HOM05D006257 ORTHO05D007708 3.0e-32 143.7 108 70.4
HPP92_024114 Vanilla planifolia HOM05D006257 ORTHO05D007708 3.9e-32 143.3 128 59.4
HPP92_024119 Vanilla planifolia HOM05D006257 ORTHO05D007708 3.9e-32 143.3 128 59.4
Eucgr.C04235 Eucalyptus grandis HOM05D006257 ORTHO05D007708 8.6e-32 142.1 128 59.4
ClCG11G003160 Citrullus lanatus HOM05D006257 ORTHO05D007708 1.5e-31 141.4 128 58.6
CAN.G551.82 Capsicum annuum HOM05D006257 ORTHO05D007708 1.9e-31 141.0 128 57.8
Sabra18G0110100 Salix brachista HOM05D006257 ORTHO05D007708 1.9e-31 141.0 157 53.5
ECA234G3820 Erigeron canadensis HOM05D006257 ORTHO05D007708 2.5e-31 140.6 126 57.1
MSTRG.26415 Avicennia marina HOM05D006257 ORTHO05D007708 3.3e-31 140.2 128 60.2
Cc06_g08290 Coffea canephora HOM05D006257 ORTHO05D007708 3.3e-31 140.2 128 60.2
Sabra06G0050300 Salix brachista HOM05D006257 ORTHO05D007708 3.3e-31 140.2 145 55.2
TWI34G0058 Tripterygium wilfordii HOM05D006257 ORTHO05D007708 3.3e-31 140.2 128 58.6
EL10Ac8g18684 Beta vulgaris HOM05D006257 ORTHO05D007708 4.3e-31 139.8 128 59.4
RcHm_v2.0_Chr2g0088141 Rosa chinensis HOM05D006257 ORTHO05D007708 4.3e-31 139.8 128 62.5
ATR0598G180 Amborella trichopoda HOM05D006257 ORTHO05D007708 5.6e-31 139.4 152 53.3
Os06g0705100 Oryza sativa ssp. japonica HOM05D006257 ORTHO05D007708 5.6e-31 139.4 126 59.5
Solyc12g009600.2 Solanum lycopersicum HOM05D006257 ORTHO05D007708 5.6e-31 139.4 128 57.0
Sopen12g004590 Solanum pennellii HOM05D006257 ORTHO05D007708 5.6e-31 139.4 128 57.0
AUR62013336 Chenopodium quinoa HOM05D006257 ORTHO05D007708 7.3e-31 139.0 123 62.6
Nitab4.5_0006319g0030 Nicotiana tabacum HOM05D006257 ORTHO05D007708 7.3e-31 139.0 128 57.0
Nitab4.5_0001349g0030 Nicotiana tabacum HOM05D006257 ORTHO05D007708 1.2e-30 138.3 128 57.0
Aqoxy7G02265 Aquilegia oxysepala HOM05D006257 ORTHO05D007708 1.6e-30 137.9 128 60.2
Hund09262 Selenicereus undatus HOM05D006257 ORTHO05D007708 1.6e-30 137.9 126 55.6
AUR62011151 Chenopodium quinoa HOM05D006257 ORTHO05D007708 3.6e-30 136.7 128 57.0
FAN23G1258 Fragaria x ananassa HOM05D006257 ORTHO05D007708 6.2e-30 136.0 128 60.9
HanXRQChr10g0315681 Helianthus annuus HOM05D006257 ORTHO05D007708 6.2e-30 136.0 126 57.9
Oeu038255.2 Olea europaea HOM05D006257 ORTHO05D007708 8.0e-30 135.6 117 63.2
Zm00001eb227340 Zea mays HOM05D006257 ORTHO05D007708 8.0e-30 135.6 124 58.9
FAN26G0886 Fragaria x ananassa HOM05D006257 ORTHO05D007708 1.0e-29 135.2 128 60.9
unitig_37.g12643 Utricularia gibba HOM05D006257 ORTHO05D007708 1.0e-29 135.2 128 56.2
Migut.K00442 Erythranthe guttata HOM05D006257 ORTHO05D007708 1.4e-29 134.8 107 64.5
Ah.09g225230 Amaranthus hybridus HOM05D006257 ORTHO05D007708 3.1e-29 133.7 156 48.7
PSO210G1954 Papaver somniferum HOM05D006257 ORTHO05D007708 3.1e-29 133.7 126 59.5
PSO210G1348 Papaver somniferum HOM05D006257 ORTHO05D007708 4.0e-29 133.3 126 59.5
FvH4_1g03010 Fragaria vesca HOM05D006257 ORTHO05D007708 5.2e-29 132.9 128 59.4
FAN19G0162 Fragaria x ananassa HOM05D006257 ORTHO05D007708 5.2e-29 132.9 128 59.4
FAN28G1785 Fragaria x ananassa HOM05D006257 ORTHO05D007708 5.2e-29 132.9 128 59.4
Oeu052179.2 Olea europaea HOM05D006257 ORTHO05D007708 5.2e-29 132.9 128 57.0
Sed0025440 Sechium edule HOM05D006257 ORTHO05D007708 6.8e-29 132.5 126 55.6
TWI63G0502 Tripterygium wilfordii HOM05D006257 ORTHO05D007708 1.2e-28 131.7 128 55.5
CDE07G0641 Ceratophyllum demersum HOM05D006257 ORTHO05D007708 2.2e-27 127.5 128 53.9
DCAR_020916 Daucus carota HOM05D006257 ORTHO05D007708 2.2e-27 127.5 128 55.5
SGA_v2.0_scaffold63G21838 Striga asiatica HOM05D006257 ORTHO05D007708 2.2e-27 127.5 128 56.2
Lsat_1_v5_gn_5_95081 Lactuca sativa HOM05D006257 ORTHO05D007708 6.4e-27 125.9 105 61.9
Haze_25555 Corylus avellana HOM05D006257 ORTHO05D007708 4.1e-26 123.2 127 53.5
SEGI_32211 Sequoiadendron giganteum HOM05D006257 ORTHO05D007708 2.8e-22 110.5 115 50.4
Sc14g0000190 Simmondsia chinensis HOM05D006257 ORTHO05D007708 5.8e-20 102.8 128 48.4
Nn8g39488 Nelumbo nucifera HOM05D006257 ORTHO05D007708 7.5e-20 102.4 92 60.9
C02p39320 Brassica napus HOM05D006257 ORTHO05D007708 2.9e-19 100.5 50 96.0
AagrBONN_evm.TU.Sc2ySwM_344.2604 Anthoceros agrestis HOM05D006257 ORTHO05D007708 1.6e-17 94.7 127 44.1
SMO111G0154 Selaginella moellendorffii HOM05D006257 ORTHO05D007708 3.5e-17 93.6 110 45.5
Mapoly0099s0035 Marchantia polymorpha HOM05D006257 ORTHO05D007708 1.7e-16 91.3 106 46.2
Aqoxy7G03671 Aquilegia oxysepala HOM05D006257 ORTHO05D007708 1.1e-15 88.6 73 61.6
Mapoly0522s0001 Marchantia polymorpha HOM05D006257 ORTHO05D007708 1.1e-15 88.6 106 45.3
Pp3c8_15020 Physcomitrium patens HOM05D006257 ORTHO05D007708 1.1e-13 82.0 111 40.5
Dinv36505 Davidia involucrata HOM05D006257 ORTHO05D007708 1.5e-12 78.2 69 58.0
Manes.14G133800 Manihot esculenta HOM05D006257 ORTHO05D007708 1.9e-10 71.2 67 53.7
BNapus_Darmor_BZH_scaffold_167p00080 Brassica napus HOM05D000496 ORTHO05D000411 2.4e-10 70.9 142 33.1
C04p72950 Brassica napus HOM05D007244 ORTHO05D011635 1.6e-09 68.2 126 38.1
Sed0003979 Sechium edule HOM05D006257 ORTHO05D007708 1.6e-09 68.2 66 54.5
Psat4g037320 Pisum sativum HOM05D006257 ORTHO05D007708 1.7e-08 64.7 71 50.7
BcaC05g28718 Brassica carinata HOM05D007244 ORTHO05D011635 2.3e-08 64.3 98 43.9
C04p05140 Brassica napus HOM05D007244 ORTHO05D011635 2.3e-08 64.3 75 48.0
C04p17430 Brassica napus HOM05D007244 ORTHO05D021589 1.5e-07 61.6 83 45.8
BolC4t25533H Brassica oleracea HOM05D000496 ORTHO05D000411 1.5e-07 61.6 124 34.7
C04p39440 Brassica napus HOM05D007244 ORTHO05D011635 1.9e-07 61.2 140 33.6
BcaC06g30752 Brassica carinata HOM05D007244 ORTHO05D039411 3.3e-07 60.5 93 38.7
C04p39410 Brassica napus HOM05D007244 ORTHO05D011635 4.3e-07 60.1 124 33.9
C03p14600 Brassica napus HOM05D000496 ORTHO05D000411 2.1e-06 57.8 110 36.4
C06p49860 Brassica napus HOM05D007244 ORTHO05D011635 6.2e-06 56.2 184 29.3
BcaC02g09016 Brassica carinata HOM05D001292 ORTHO05D001202 8.1e-06 55.8 212 29.7


User provided reference genes

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