Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p24720 Brassica napus HOM05D002674 ORTHO05D007700 6.4e-140 500.7 255 100.0
BraA02t07459Z Brassica rapa HOM05D002674 ORTHO05D007700 1.8e-134 482.6 258 95.7
C02p38980 Brassica napus HOM05D002674 ORTHO05D007700 2.6e-133 478.8 258 95.7
BolC2t09909H Brassica oleracea HOM05D002674 ORTHO05D007700 1.3e-132 476.5 258 95.3
BcaC03g16124 Brassica carinata HOM05D002674 ORTHO05D007700 2.5e-131 472.2 258 95.3
Sp6g02330 Schrenkiella parvula HOM05D002674 ORTHO05D007700 5.1e-121 438.0 263 89.0
Thhalv10028893m.g Eutrema salsugineum HOM05D002674 ORTHO05D007700 7.4e-112 407.5 264 84.8
CARHR250690 Cardamine hirsuta HOM05D002674 ORTHO05D007700 6.9e-110 401.0 274 82.1
AT4G02425 Arabidopsis thaliana HOM05D002674 ORTHO05D007700 2.0e-109 399.4 264 83.0
Carub.0006s3472 Capsella rubella HOM05D002674 ORTHO05D007700 3.2e-107 392.1 263 81.4
BcaB05g23628 Brassica carinata HOM05D002674 ORTHO05D007700 3.0e-89 332.4 208 87.5
AL6G50650 Arabidopsis lyrata HOM05D002674 ORTHO05D007700 2.0e-88 329.7 222 82.4
THA.LOC104815928 Tarenaya hassleriana HOM05D002674 ORTHO05D007700 1.7e-76 290.0 270 65.2
THA.LOC104825970 Tarenaya hassleriana HOM05D002674 ORTHO05D007700 5.5e-75 285.0 284 62.0
Aa31LG1G9740 Aethionema arabicum HOM05D002674 ORTHO05D007700 8.9e-73 277.7 270 63.7
Thecc.01G299900 Theobroma cacao HOM05D002674 ORTHO05D007700 2.7e-69 266.2 277 61.0
Carub.0001s0195 Capsella rubella HOM05D002674 ORTHO05D007700 4.5e-69 265.4 265 63.0
Atru.chr5.1151 Acer truncatum HOM05D002674 ORTHO05D007700 1.0e-68 264.2 274 59.1
COL.COLO4_23350 Corchorus olitorius HOM05D002674 ORTHO05D007700 1.9e-67 260.0 275 58.9
Prupe.8G261000 Prunus persica HOM05D002674 ORTHO05D007700 3.3e-67 259.2 286 58.0
ClCG10G010900 Citrullus lanatus HOM05D002674 ORTHO05D007700 2.8e-66 256.1 275 56.7
MD03G1287800 Malus domestica HOM05D002674 ORTHO05D007700 1.8e-65 253.4 284 56.3
FAN27G2781 Fragaria x ananassa HOM05D002674 ORTHO05D007700 6.8e-65 251.5 275 57.1
MD11G1310500 Malus domestica HOM05D002674 ORTHO05D007700 1.2e-64 250.8 281 58.0
MELO3C017958.2 Cucumis melo HOM05D002674 ORTHO05D007700 2.6e-64 249.6 277 56.3
CsaV3_4G000780 Cucumis sativus L. HOM05D002674 ORTHO05D007700 4.4e-64 248.8 277 56.0
Ciclev10021537m.g Citrus clementina HOM05D002674 ORTHO05D007700 5.8e-64 248.4 285 55.4
CANSAT25G1821 Cannabis sativa HOM05D002674 ORTHO05D007700 9.8e-64 247.7 283 55.8
Duzib138G1545 Durio zibethinus HOM05D002674 ORTHO05D007700 4.9e-63 245.4 277 58.1
Glyma.02G018300 Glycine max HOM05D002674 ORTHO05D007700 4.1e-62 242.3 269 57.2
Duzib133G1209 Durio zibethinus HOM05D002674 ORTHO05D007700 2.7e-61 239.6 276 57.2
Gohir.D08G085300 Gossypium hirsutum HOM05D002674 ORTHO05D007700 6.0e-61 238.4 275 55.6
Gorai.004G089800 Gossypium raimondii HOM05D002674 ORTHO05D007700 1.0e-60 237.7 273 55.7
TWI23G1032 Tripterygium wilfordii HOM05D002674 ORTHO05D007700 1.0e-60 237.7 267 56.2
Psat6g166040 Pisum sativum HOM05D002674 ORTHO05D007700 1.7e-60 236.9 264 55.7
Phvul.007G146100 Phaseolus vulgaris HOM05D002674 ORTHO05D007700 6.6e-60 235.0 269 56.1
Gohir.A08G075900 Gossypium hirsutum HOM05D002674 ORTHO05D007700 8.6e-60 234.6 272 54.4
TAR365G1234 Trochodendron aralioides HOM05D002674 ORTHO05D007700 3.3e-59 232.6 262 56.9
Glyma.10G018600 Glycine max HOM05D002674 ORTHO05D007700 1.6e-58 230.3 276 54.0
QL12p028514 Quercus lobata HOM05D002674 ORTHO05D007700 2.1e-58 229.9 303 50.8
CiPaw.07G108400 Carya illinoinensis HOM05D002674 ORTHO05D007700 3.6e-58 229.2 272 54.4
Ca_10339_v3 Cicer arietinum L. HOM05D002674 ORTHO05D007700 8.1e-58 228.0 269 53.5
Lj5g0010238 Lotus japonicus HOM05D002674 ORTHO05D007700 3.1e-57 226.1 275 54.2
Potri.014G129500 Populus trichocarpa HOM05D002674 ORTHO05D007700 5.2e-57 225.3 268 54.1
Sabra14G0096100 Salix brachista HOM05D002674 ORTHO05D007700 5.2e-57 225.3 269 53.9
Eucgr.K03478 Eucalyptus grandis HOM05D002674 ORTHO05D007700 6.8e-57 224.9 275 52.4
Actinidia24347 Actinidia chinensis HOM05D002674 ORTHO05D007700 2.0e-56 223.4 264 56.1
FAN24G1157 Fragaria x ananassa HOM05D002674 ORTHO05D007700 2.6e-56 223.0 278 52.5
FAN20G3185 Fragaria x ananassa HOM05D002674 ORTHO05D007700 3.4e-56 222.6 276 52.5
FvH4_2g25690 Fragaria vesca HOM05D002674 ORTHO05D007700 5.8e-56 221.9 278 52.5
FAN15G1012 Fragaria x ananassa HOM05D002674 ORTHO05D007700 5.8e-56 221.9 276 52.5
Medtr1g088580 Medicago truncatula HOM05D002674 ORTHO05D007700 2.9e-55 219.5 267 51.3
Cfa005916 Carpinus fangiana HOM05D002674 ORTHO05D007700 4.9e-55 218.8 280 53.2
Lj1A25T5 Lonicera japonica HOM05D002674 ORTHO05D007700 8.3e-55 218.0 276 54.3
Aa31LG5G2060 Aethionema arabicum HOM05D002674 ORTHO05D007700 4.1e-54 215.7 238 59.2
RcHm_v2.0_Chr6g0293961 Rosa chinensis HOM05D002674 ORTHO05D007700 7.1e-54 214.9 279 51.6
Dinv33053 Davidia involucrata HOM05D002674 ORTHO05D007700 1.6e-53 213.8 283 51.9
Aqoxy5G00752 Aquilegia oxysepala HOM05D002674 ORTHO05D007700 2.3e-52 209.9 275 49.8
Manes.01G218600 Manihot esculenta HOM05D002674 ORTHO05D007700 2.3e-52 209.9 277 50.9
Sed0013149 Sechium edule HOM05D002674 ORTHO05D007700 3.9e-52 209.1 256 51.6
Potri.002G204700 Populus trichocarpa HOM05D002674 ORTHO05D007700 6.6e-52 208.4 270 50.7
MBI19_g25354_MAGBIO Magnolia biondii HOM05D002674 ORTHO05D007700 1.9e-51 206.8 286 48.3
VMungo0720G0138 Vigna mungo HOM05D002674 ORTHO05D007700 2.5e-51 206.5 224 58.0
TPR.G34010 Trifolium pratense HOM05D002674 ORTHO05D007700 9.5e-51 204.5 264 50.8
Sabra02G0154700 Salix brachista HOM05D002674 ORTHO05D008110 1.2e-50 204.1 255 52.2
Rhsim01G0243300 Rhododendron simsii HOM05D002674 ORTHO05D007700 1.1e-49 201.1 289 50.9
TAR636G1278 Trochodendron aralioides HOM05D002674 ORTHO05D007700 1.2e-48 197.6 272 50.0
SGA_v2.0_scaffold1G00369 Striga asiatica HOM05D002674 ORTHO05D007700 7.6e-48 194.9 258 51.6
CDE11G0633 Ceratophyllum demersum HOM05D002674 ORTHO05D007700 4.9e-47 192.2 258 52.3
Cc01_g20810 Coffea canephora HOM05D002674 ORTHO05D007700 2.4e-46 189.9 278 48.2
HPP92_025205 Vanilla planifolia HOM05D002674 ORTHO05D007700 2.4e-46 189.9 257 51.8
EL10Ac7g17509 Beta vulgaris HOM05D002674 ORTHO05D007700 7.1e-46 188.3 301 47.2
CSS0049735 Camellia sinensis var. sinensis HOM05D002674 ORTHO05D007700 1.2e-45 187.6 271 49.1
CDE05G2513 Ceratophyllum demersum HOM05D002674 ORTHO05D007700 1.0e-44 184.5 250 50.8
Migut.D00215 Erythranthe guttata HOM05D002674 ORTHO05D007700 1.3e-44 184.1 255 51.4
Lalb_Chr06g0163511 Lupinus albus HOM05D002674 ORTHO05D007700 3.0e-44 183.0 263 49.0
HanXRQChr10g0284651 Helianthus annuus HOM05D002674 ORTHO05D007700 3.9e-44 182.6 293 45.7
Hund18157 Selenicereus undatus HOM05D002674 ORTHO05D007700 5.1e-44 182.2 283 45.9
Lsat_1_v5_gn_7_11800 Lactuca sativa HOM05D002674 ORTHO05D007700 3.6e-42 176.0 244 50.8
Lsat_1_v5_gn_9_5620 Lactuca sativa HOM05D002674 ORTHO05D007700 3.6e-42 176.0 244 50.8
Sopen06g003880 Solanum pennellii HOM05D002674 ORTHO05D007700 3.6e-42 176.0 268 48.9
PGSC0003DMG402017938 Solanum tuberosum HOM05D002674 ORTHO05D007700 8.1e-42 174.9 268 48.1
Solyc06g009120.3 Solanum lycopersicum HOM05D002674 ORTHO05D007700 1.1e-41 174.5 268 48.5
CSS0000533 Camellia sinensis var. sinensis HOM05D002674 ORTHO05D007700 1.4e-41 174.1 270 48.1
Sc24g0003790 Simmondsia chinensis HOM05D002674 ORTHO05D007700 1.4e-41 174.1 281 46.3
Nitab4.5_0002470g0100 Nicotiana tabacum HOM05D002674 ORTHO05D007700 1.8e-41 173.7 271 47.6
PSO832G4034 Papaver somniferum HOM05D002674 ORTHO05D007700 2.4e-41 173.3 289 44.3
Nn3g21481 Nelumbo nucifera HOM05D002674 ORTHO05D007700 6.8e-41 171.8 237 47.3
arahy.Tifrunner.gnm1.ann1.2P60TQ Arachis hypogaea HOM05D002674 ORTHO05D007700 8.9e-41 171.4 240 50.8
Ah.15g093240 Amaranthus hybridus HOM05D002674 ORTHO05D007700 1.2e-40 171.0 296 45.6
Hma1.2p1_0491F.1_g164500 Hydrangea macrophylla HOM05D002674 ORTHO05D007700 1.5e-40 170.6 199 55.8
Nitab4.5_0005805g0020 Nicotiana tabacum HOM05D002674 ORTHO05D007700 5.8e-40 168.7 271 48.0
Peaxi162Scf00399g00714 Petunia axillaris HOM05D002674 ORTHO05D007700 1.9e-38 163.7 292 44.9
arahy.Tifrunner.gnm1.ann1.YN8C8B Arachis hypogaea HOM05D002674 ORTHO05D007700 1.2e-37 161.0 240 48.8
vmacro15007 Vaccinium macrocarpon HOM05D002674 ORTHO05D007700 2.7e-37 159.8 251 48.2
unitig_22.g5241 Utricularia gibba HOM05D002674 ORTHO05D007700 6.0e-37 158.7 220 51.8
DCAR_002828 Daucus carota HOM05D002674 ORTHO05D007700 1.0e-36 157.9 241 47.7
Oeu054122.1 Olea europaea HOM05D002674 ORTHO05D007700 2.8e-34 149.8 168 57.7
BolC6t36475H Brassica oleracea HOM05D000186 ORTHO05D015008 1.9e-30 137.1 80 88.8
ATR0796G100 Amborella trichopoda HOM05D002674 ORTHO05D007700 1.6e-29 134.0 276 40.6
BcaC03g16430 Brassica carinata HOM05D002674 ORTHO05D007700 8.7e-28 128.3 78 85.9
Oeu053149.1 Olea europaea HOM05D002674 ORTHO05D007700 4.3e-27 125.9 168 54.2
AUR62033139 Chenopodium quinoa HOM05D002674 ORTHO05D007700 7.3e-27 125.2 215 46.0
HPP92_006921 Vanilla planifolia HOM05D002674 ORTHO05D007700 2.8e-26 123.2 220 44.5
BcaB07g32361 Brassica carinata HOM05D002674 ORTHO05D007700 5.3e-25 119.0 77 79.2
ECA247G3124 Erigeron canadensis HOM05D002674 ORTHO05D007700 9.0e-25 118.2 257 39.3
AUR62008632 Chenopodium quinoa HOM05D002674 ORTHO05D007700 1.7e-23 114.0 172 48.8
Zm00001eb127170 Zea mays HOM05D002674 ORTHO05D007700 4.9e-23 112.5 257 39.3
CAN.G1280.1 Capsicum annuum HOM05D002674 ORTHO05D007700 1.4e-22 110.9 271 38.4
SEGI_12569 Sequoiadendron giganteum HOM05D002674 ORTHO05D007700 2.4e-22 110.2 281 38.4
C05p48610 Brassica napus HOM05D002674 ORTHO05D007700 7.1e-22 108.6 69 79.7
C08p25960 Brassica napus HOM05D002674 ORTHO05D007700 7.1e-22 108.6 69 79.7
Hma1.2p1_0491F.1_g164510 Hydrangea macrophylla HOM05D002674 ORTHO05D007700 7.1e-22 108.6 108 63.9
BolC9t55650H Brassica oleracea HOM05D002674 ORTHO05D007700 3.9e-20 102.8 61 85.2
CANSAT56G3445 Cannabis sativa HOM05D002674 ORTHO05D007700 3.9e-20 102.8 87 64.4
C02p62500 Brassica napus HOM05D002674 ORTHO05D007700 3.3e-19 99.8 61 82.0
Zm00001eb285590 Zea mays HOM05D002674 ORTHO05D007700 3.3e-19 99.8 251 34.7
C09p27860 Brassica napus HOM05D002674 ORTHO05D007700 1.3e-18 97.8 61 82.0
BolC1t01853H Brassica oleracea HOM05D002674 ORTHO05D007700 1.3e-18 97.8 69 76.8
Os01g0316500 Oryza sativa ssp. japonica HOM05D002674 ORTHO05D007700 9.0e-17 91.7 259 35.1
Zm00001eb018450 Zea mays HOM05D002674 ORTHO05D007700 1.2e-16 91.3 214 40.2
C02p42550 Brassica napus HOM05D000186 ORTHO05D015008 1.9e-11 73.9 37 91.9
BcaB04g18179 Brassica carinata HOM05D002674 ORTHO05D007700 2.5e-11 73.6 37 91.9
BcaB06g28993 Brassica carinata HOM05D002674 ORTHO05D007700 2.5e-11 73.6 56 66.1
A09p66240 Brassica napus HOM05D002674 ORTHO05D007700 4.3e-11 72.8 41 82.9
C06p13190 Brassica napus HOM05D002674 ORTHO05D015008 7.4e-11 72.0 37 89.2
A08p09760 Brassica napus HOM05D002674 ORTHO05D007700 9.6e-11 71.6 37 89.2
BraA08t32971Z Brassica rapa HOM05D002674 ORTHO05D007700 9.6e-11 71.6 37 89.2
BcaB06g27116 Brassica carinata HOM05D002674 ORTHO05D094085 1.4e-09 67.8 77 50.6
BcaB02g10882 Brassica carinata HOM05D006185 ORTHO05D007572 7.6e-08 62.0 48 77.1


User provided reference genes

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