Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 1.4e-184 649.4 325 100.0
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 3.2e-184 648.3 325 99.7
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 1.4e-179 632.9 325 97.2
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 6.4e-177 624.0 324 96.3
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 6.4e-177 624.0 337 93.8
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 1.8e-166 589.3 331 92.4
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 7.2e-152 540.8 317 87.4
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 3.0e-150 535.4 325 81.8
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 7.4e-149 530.8 324 82.7
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 4.8e-148 528.1 329 81.5
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 1.7e-145 519.6 325 81.8
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 1.1e-141 506.9 320 80.6
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 3.2e-136 488.8 320 77.8
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 5.0e-129 464.9 321 74.1
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 4.7e-127 458.4 320 74.1
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 3.0e-126 455.7 319 73.0
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 4.4e-125 451.8 317 71.9
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 7.0e-123 444.5 327 69.1
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 1.6e-122 443.4 320 69.1
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 2.0e-122 443.0 327 68.8
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 2.7e-122 442.6 317 72.2
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 5.9e-122 441.4 322 68.9
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 7.7e-122 441.0 317 71.9
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 1.3e-121 440.3 327 68.8
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 1.7e-121 439.9 318 70.8
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 3.8e-121 438.7 316 69.3
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 3.8e-121 438.7 317 72.6
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 6.5e-121 438.0 316 69.0
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 8.5e-121 437.6 324 67.9
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.1e-120 437.2 316 68.7
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.5e-120 436.8 316 68.4
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 1.9e-120 436.4 316 69.0
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 5.5e-120 434.9 316 68.4
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 7.2e-120 434.5 316 69.0
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 9.4e-120 434.1 318 70.8
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 9.4e-120 434.1 329 66.6
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 1.6e-119 433.3 324 68.5
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 3.0e-118 429.1 320 67.5
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 3.0e-118 429.1 321 68.2
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 5.2e-118 428.3 320 70.0
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 6.8e-118 427.9 319 69.0
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 5.7e-117 424.9 317 68.1
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 7.5e-117 424.5 329 66.9
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 9.8e-117 424.1 319 67.4
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 9.8e-117 424.1 361 62.6
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 1.3e-116 423.7 329 66.9
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 1.3e-116 423.7 315 68.3
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 1.7e-116 423.3 316 68.7
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 2.8e-116 422.5 324 67.3
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 2.8e-116 422.5 321 67.0
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 4.8e-116 421.8 316 69.0
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 6.3e-116 421.4 321 69.5
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 8.3e-116 421.0 318 67.0
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 8.3e-116 421.0 322 66.1
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 8.3e-116 421.0 321 66.7
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 1.8e-115 419.9 318 67.6
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 1.8e-115 419.9 321 66.4
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 3.1e-115 419.1 322 64.0
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 5.4e-115 418.3 321 67.3
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 7.0e-115 417.9 321 68.8
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 7.0e-115 417.9 329 64.7
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 9.1e-115 417.5 317 67.5
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 1.2e-114 417.2 326 64.7
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 1.2e-114 417.2 321 65.7
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 1.2e-114 417.2 320 66.9
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 1.6e-114 416.8 326 66.6
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 2.0e-114 416.4 322 67.4
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 4.5e-114 415.2 318 67.3
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 4.5e-114 415.2 241 85.9
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 7.7e-114 414.5 312 68.6
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 2.2e-113 412.9 323 64.7
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 3.8e-113 412.1 316 67.4
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 1.9e-112 409.8 318 65.7
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 2.5e-112 409.5 313 66.5
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 1.2e-111 407.1 316 66.5
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 2.1e-111 406.4 317 65.3
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 2.7e-111 406.0 325 64.3
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 4.7e-111 405.2 344 62.5
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 4.7e-111 405.2 317 65.0
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 8.0e-111 404.4 324 64.8
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 1.0e-110 404.1 313 65.8
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 2.0e-109 399.8 322 63.4
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 2.0e-109 399.8 322 63.4
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 2.6e-109 399.4 318 63.8
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 9.8e-109 397.5 380 56.3
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 3.7e-108 395.6 317 63.7
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 3.1e-107 392.5 346 59.8
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 9.2e-107 391.0 279 71.3
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 2.0e-106 389.8 319 63.3
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 3.5e-106 389.0 320 63.8
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 1.5e-104 383.6 315 62.5
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 1.5e-104 383.6 290 66.9
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 2.1e-103 379.8 262 72.1
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 1.0e-102 377.5 313 62.6
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 1.1e-99 367.5 315 60.6
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 7.0e-99 364.8 317 59.0
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 3.5e-98 362.5 281 64.4
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 1.1e-96 357.5 243 73.3
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 3.6e-95 352.4 297 62.0
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 3.6e-95 352.4 274 65.7
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 5.2e-94 348.6 248 70.6
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 1.5e-88 330.5 242 69.4
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 2.3e-86 323.2 315 54.6
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 2.3e-86 323.2 318 51.9
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 9.2e-83 311.2 233 67.0
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 1.2e-79 300.8 242 64.5
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 6.2e-79 298.5 313 54.6
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 3.4e-77 292.7 205 72.2
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 1.9e-75 287.0 243 64.2
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 4.1e-75 285.8 250 59.6
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 1.6e-71 273.9 237 60.3
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 3.1e-70 269.6 242 59.5
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 1.5e-64 250.8 188 67.0
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 5.3e-62 242.3 303 44.9
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 2.1e-55 220.3 190 60.5
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 8.1e-55 218.4 185 60.0
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 5.3e-46 189.1 309 38.8
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 4.9e-44 182.6 322 39.8
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 9.3e-43 178.3 133 66.2
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 5.9e-37 159.1 319 36.1
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 4.2e-35 152.9 133 60.2
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 6.1e-34 149.1 125 64.8
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 1.9e-32 144.1 109 68.8
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 6.9e-30 135.6 112 62.5
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 3.4e-29 133.3 113 59.3
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 3.4e-29 133.3 113 59.3
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 3.4e-29 133.3 113 59.3
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 2.2e-28 130.6 131 54.2
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 1.2e-26 124.8 81 79.0
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 2.6e-24 117.1 92 62.0
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 5.7e-24 115.9 80 75.0
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 1.8e-22 110.9 103 51.5
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 3.7e-15 86.7 54 74.1
RcHm_v2.0_Chr1g0353321 Rosa chinensis HOM05D005332 ORTHO05D006861 8.2e-15 85.5 73 56.2
Glyma.03G015132 Glycine max HOM05D005332 ORTHO05D006861 1.1e-14 85.1 83 54.2
RcHm_v2.0_Chr0c39g0503291 Rosa chinensis HOM05D005332 ORTHO05D006861 5.2e-09 66.2 58 56.9
RcHm_v2.0_Chr1g0353131 Rosa chinensis HOM05D005332 ORTHO05D006861 5.2e-09 66.2 58 56.9
arahy.Tifrunner.gnm1.ann1.6Z7PRK Arachis hypogaea HOM05D005332 ORTHO05D006861 6.7e-09 65.9 58 56.9
arahy.Tifrunner.gnm1.ann1.SQV5XE Arachis hypogaea HOM05D005332 ORTHO05D004201 1.3e-07 61.6 43 67.4
arahy.Tifrunner.gnm1.ann1.G2MMRU Arachis hypogaea HOM05D005332 ORTHO05D006861 2.4e-06 57.4 43 67.4


User provided reference genes

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